Wall clock time and date at job start Mon Mar 30 2020 03:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13609 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 N 1.46500 * 109.46918 * 171.58085 * 3 2 1 5 5 C 1.36793 * 119.99979 * 276.08281 * 4 3 2 6 6 H 1.07993 * 120.00203 * 143.60394 * 5 4 3 7 7 C 1.38878 * 119.99984 * 323.60901 * 5 4 3 8 8 N 1.31526 * 120.00247 * 158.31342 * 7 5 4 9 9 Si 1.86796 * 119.99925 * 338.31409 * 7 5 4 10 10 H 1.48500 * 109.47191 * 95.34846 * 9 7 5 11 11 H 1.48495 * 109.47397 * 215.35151 * 9 7 5 12 12 H 1.48508 * 109.47148 * 335.34737 * 9 7 5 13 13 C 1.38579 * 120.00450 * 96.08336 * 4 3 2 14 14 C 1.39088 * 120.18600 * 89.99843 * 13 4 3 15 15 C 1.37936 * 120.05359 * 180.02562 * 14 13 4 16 16 C 1.38658 * 120.44231 * 359.97438 * 15 14 13 17 17 C 1.37775 * 120.38867 * 0.02562 * 16 15 14 18 18 C 1.39750 * 119.93102 * 359.76627 * 17 16 15 19 19 C 1.47300 * 120.21871 * 180.25476 * 18 17 16 20 20 O 1.21520 * 120.00026 * 180.23334 * 19 18 17 21 21 O 1.34777 * 119.99969 * 0.23542 * 19 18 17 22 22 H 1.09002 * 109.47550 * 291.57428 * 3 2 1 23 23 H 1.08996 * 109.47688 * 51.57842 * 3 2 1 24 24 H 0.96997 * 119.99812 * 179.97438 * 8 7 5 25 25 H 1.07997 * 119.97563 * 359.97438 * 14 13 4 26 26 H 1.07995 * 119.77764 * 179.97438 * 15 14 13 27 27 H 1.08002 * 119.80406 * 179.97438 * 16 15 14 28 28 H 1.08002 * 120.03304 * 180.02562 * 17 16 15 29 29 H 0.96703 * 116.99603 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0957 1.3672 -0.2022 5 6 3.2051 1.8741 -1.4681 6 1 2.9825 2.9143 -1.6543 7 6 3.6022 1.0510 -2.5137 8 7 3.3111 1.3768 -3.7543 9 14 4.5499 -0.5191 -2.1583 10 1 3.6057 -1.6635 -2.0949 11 1 5.5410 -0.7544 -3.2388 12 1 5.2563 -0.3874 -0.8587 13 6 3.4462 2.1465 0.8888 14 6 4.7504 2.1274 1.3717 15 6 5.0962 2.9038 2.4581 16 6 4.1508 3.7078 3.0764 17 6 2.8537 3.7407 2.6132 18 6 2.4870 2.9639 1.5109 19 6 1.1033 2.9985 1.0069 20 8 0.7877 2.3182 0.0507 21 8 0.1873 3.7847 1.6062 22 1 2.9716 -0.3771 0.9557 23 1 2.9717 -0.6378 -0.8051 24 1 3.5889 0.8020 -4.4846 25 1 5.4928 1.5036 0.8962 26 1 6.1101 2.8852 2.8296 27 1 4.4327 4.3112 3.9266 28 1 2.1220 4.3694 3.0989 29 1 -0.7077 3.7737 1.2400 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020079912.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:49 Heat of formation + Delta-G solvation = 18.392685 kcal Electronic energy + Delta-G solvation = -17812.867849 eV Core-core repulsion = 14896.319358 eV Total energy + Delta-G solvation = -2916.548491 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.95457 -38.28310 -36.52800 -35.21005 -34.68092 -31.97031 -30.94421 -29.72143 -27.10486 -24.59598 -23.44006 -21.50250 -20.23330 -18.04871 -17.51362 -17.06661 -16.32601 -15.85299 -15.31328 -14.88692 -14.58243 -14.36478 -13.73510 -13.24258 -12.92145 -12.70024 -12.42566 -12.14411 -11.98693 -11.67672 -11.29513 -11.21060 -10.96497 -10.85496 -10.52256 -10.10772 -9.90473 -9.60441 -8.79527 -8.63807 -8.27375 -7.42395 -6.18736 -3.66227 1.17955 1.73454 3.13563 3.18458 3.29096 3.32439 3.58357 3.69121 3.85327 4.23940 4.30653 4.78010 5.03203 5.16206 5.20698 5.36104 5.42618 5.77400 5.82942 5.93627 6.05106 6.07728 6.33330 6.54549 6.74995 6.98706 7.08276 7.12399 7.75798 8.27025 8.55753 8.67987 8.73711 9.43179 9.72918 10.94950 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.020946 B = 0.011539 C = 0.009004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.454037 B = 2425.886435 C = 3108.991099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C 0.215 3.785 3 C 0.220 3.780 4 N -0.545 5.545 5 C -0.262 4.262 6 H 0.082 0.918 7 C 0.045 3.955 8 N -0.879 5.879 9 Si 0.869 3.131 10 H -0.278 1.278 11 H -0.293 1.293 12 H -0.260 1.260 13 C 0.266 3.734 14 C -0.140 4.140 15 C -0.084 4.084 16 C -0.157 4.157 17 C -0.063 4.063 18 C -0.147 4.147 19 C 0.500 3.500 20 O -0.451 6.451 21 O -0.530 6.530 22 H 0.089 0.911 23 H 0.089 0.911 24 H 0.269 0.731 25 H 0.132 0.868 26 H 0.122 0.878 27 H 0.121 0.879 28 H 0.128 0.872 29 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.666 1.845 13.135 13.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.142 5.142 2 C -0.104 4.104 3 C 0.092 3.908 4 N -0.261 5.261 5 C -0.388 4.388 6 H 0.100 0.900 7 C -0.158 4.158 8 N -0.517 5.517 9 Si 0.698 3.302 10 H -0.206 1.206 11 H -0.220 1.220 12 H -0.184 1.184 13 C 0.171 3.829 14 C -0.160 4.160 15 C -0.103 4.103 16 C -0.176 4.176 17 C -0.082 4.082 18 C -0.151 4.151 19 C 0.341 3.659 20 O -0.335 6.335 21 O -0.343 6.343 22 H 0.107 0.893 23 H 0.107 0.893 24 H 0.079 0.921 25 H 0.150 0.850 26 H 0.139 0.861 27 H 0.139 0.861 28 H 0.146 0.854 29 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 2.326 1.603 12.737 13.047 hybrid contribution 0.256 -0.657 -0.396 0.809 sum 2.582 0.946 12.341 12.644 Atomic orbital electron populations 1.80839 1.13870 1.10099 1.09406 1.30358 0.96264 0.91344 0.92414 1.19191 0.81055 0.88840 1.01718 1.41135 1.71288 1.11320 1.02399 1.18549 1.41921 0.97826 0.80542 0.89993 1.25380 0.97366 0.98238 0.94838 1.69810 1.43906 1.39027 0.98976 0.87063 0.80858 0.83696 0.78599 1.20636 1.22001 1.18397 1.17533 0.90121 0.89529 0.85687 1.21779 0.96628 1.00868 0.96754 1.21230 0.99051 0.94893 0.95114 1.20953 0.93287 1.01686 1.01627 1.21267 0.96420 0.96354 0.94147 1.19881 0.91328 1.03477 1.00421 1.20875 0.85867 0.77411 0.81746 1.91098 1.79667 1.38254 1.24455 1.84526 1.24106 1.64779 1.60850 0.89286 0.89336 0.92098 0.85014 0.86052 0.86100 0.85444 0.73839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -11.18 17.28 42.16 0.73 -10.46 15 2 C 0.22 4.93 12.75 -20.76 -0.26 4.67 15 3 C 0.22 4.57 5.16 -6.83 -0.04 4.53 15 4 N -0.55 -12.29 1.06 -116.01 -0.12 -12.42 15 5 C -0.26 -7.01 8.95 -15.10 -0.14 -7.15 15 6 H 0.08 2.48 8.06 -52.49 -0.42 2.05 15 7 C 0.04 1.22 5.34 -17.45 -0.09 1.13 15 8 N -0.88 -25.86 13.96 55.49 0.77 -25.08 15 9 Si 0.87 19.71 24.94 -169.99 -4.24 15.48 15 10 H -0.28 -6.15 6.70 56.52 0.38 -5.78 15 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 15 12 H -0.26 -5.33 7.11 56.52 0.40 -4.93 15 13 C 0.27 5.20 5.00 -83.63 -0.42 4.79 15 14 C -0.14 -2.28 9.96 -39.38 -0.39 -2.67 15 15 C -0.08 -1.09 10.03 -39.54 -0.40 -1.49 15 16 C -0.16 -1.98 10.02 -39.60 -0.40 -2.38 15 17 C -0.06 -0.93 9.61 -39.19 -0.38 -1.30 15 18 C -0.15 -2.72 5.89 -104.78 -0.62 -3.33 15 19 C 0.50 9.96 8.26 34.42 0.28 10.25 15 20 O -0.45 -10.79 10.49 -19.28 -0.20 -11.00 15 21 O -0.53 -8.44 12.68 -40.70 -0.52 -8.96 15 22 H 0.09 1.47 8.00 -51.93 -0.42 1.05 15 23 H 0.09 1.91 2.81 -51.93 -0.15 1.77 15 24 H 0.27 7.42 8.31 -40.82 -0.34 7.08 15 25 H 0.13 2.09 8.06 -52.49 -0.42 1.67 15 26 H 0.12 1.20 8.06 -52.49 -0.42 0.78 15 27 H 0.12 1.15 8.06 -52.49 -0.42 0.73 15 28 H 0.13 1.66 7.61 -52.49 -0.40 1.26 15 29 H 0.40 5.01 9.11 45.56 0.42 5.42 15 LS Contribution 260.36 15.07 3.92 3.92 Total: -1.00 -32.87 260.36 -3.89 -36.76 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -1.39 Total: 4.73 kcal Atomic # 6 Polarization: 9.87 SS G_CDS: -2.84 Total: 7.02 kcal Atomic # 7 Polarization: -49.34 SS G_CDS: 1.38 Total: -47.96 kcal Atomic # 8 Polarization: -19.24 SS G_CDS: -0.72 Total: -19.95 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -4.24 Total: 15.48 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -32.87 -3.89 -36.76 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020079912.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.157 kcal (2) G-P(sol) polarization free energy of solvation -32.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds