Wall clock time and date at job start Mon Mar 30 2020 03:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13609 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 N 1.46500 * 109.46918 * 171.58085 * 3 2 1 5 5 C 1.36793 * 119.99979 * 276.08281 * 4 3 2 6 6 H 1.07993 * 120.00203 * 143.60394 * 5 4 3 7 7 C 1.38878 * 119.99984 * 323.60901 * 5 4 3 8 8 N 1.31526 * 120.00247 * 158.31342 * 7 5 4 9 9 Si 1.86796 * 119.99925 * 338.31409 * 7 5 4 10 10 H 1.48500 * 109.47191 * 95.34846 * 9 7 5 11 11 H 1.48495 * 109.47397 * 215.35151 * 9 7 5 12 12 H 1.48508 * 109.47148 * 335.34737 * 9 7 5 13 13 C 1.38579 * 120.00450 * 96.08336 * 4 3 2 14 14 C 1.39088 * 120.18600 * 89.99843 * 13 4 3 15 15 C 1.37936 * 120.05359 * 180.02562 * 14 13 4 16 16 C 1.38658 * 120.44231 * 359.97438 * 15 14 13 17 17 C 1.37775 * 120.38867 * 0.02562 * 16 15 14 18 18 C 1.39750 * 119.93102 * 359.76627 * 17 16 15 19 19 C 1.47300 * 120.21871 * 180.25476 * 18 17 16 20 20 O 1.21520 * 120.00026 * 180.23334 * 19 18 17 21 21 O 1.34777 * 119.99969 * 0.23542 * 19 18 17 22 22 H 1.09002 * 109.47550 * 291.57428 * 3 2 1 23 23 H 1.08996 * 109.47688 * 51.57842 * 3 2 1 24 24 H 0.96997 * 119.99812 * 179.97438 * 8 7 5 25 25 H 1.07997 * 119.97563 * 359.97438 * 14 13 4 26 26 H 1.07995 * 119.77764 * 179.97438 * 15 14 13 27 27 H 1.08002 * 119.80406 * 179.97438 * 16 15 14 28 28 H 1.08002 * 120.03304 * 180.02562 * 17 16 15 29 29 H 0.96703 * 116.99603 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0957 1.3672 -0.2022 5 6 3.2051 1.8741 -1.4681 6 1 2.9825 2.9143 -1.6543 7 6 3.6022 1.0510 -2.5137 8 7 3.3111 1.3768 -3.7543 9 14 4.5499 -0.5191 -2.1583 10 1 3.6057 -1.6635 -2.0949 11 1 5.5410 -0.7544 -3.2388 12 1 5.2563 -0.3874 -0.8587 13 6 3.4462 2.1465 0.8888 14 6 4.7504 2.1274 1.3717 15 6 5.0962 2.9038 2.4581 16 6 4.1508 3.7078 3.0764 17 6 2.8537 3.7407 2.6132 18 6 2.4870 2.9639 1.5109 19 6 1.1033 2.9985 1.0069 20 8 0.7877 2.3182 0.0507 21 8 0.1873 3.7847 1.6062 22 1 2.9716 -0.3771 0.9557 23 1 2.9717 -0.6378 -0.8051 24 1 3.5889 0.8020 -4.4846 25 1 5.4928 1.5036 0.8962 26 1 6.1101 2.8852 2.8296 27 1 4.4327 4.3112 3.9266 28 1 2.1220 4.3694 3.0989 29 1 -0.7077 3.7737 1.2400 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020079912.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:49 Heat of formation + Delta-G solvation = -4.965501 kcal Electronic energy + Delta-G solvation = -17813.880736 eV Core-core repulsion = 14896.319358 eV Total energy + Delta-G solvation = -2917.561378 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.39350 -39.68618 -38.08320 -36.74485 -36.43327 -33.89923 -32.17158 -31.10688 -28.84179 -26.19241 -24.88049 -22.87443 -21.60606 -19.90747 -18.90914 -18.64920 -17.83626 -17.38019 -17.08595 -16.40942 -15.89698 -15.58960 -15.17368 -14.94173 -14.66257 -14.17928 -14.05860 -13.75293 -13.55643 -13.18454 -12.90440 -12.67628 -12.54052 -12.22904 -12.07103 -11.97233 -11.57347 -11.25974 -10.71456 -9.83968 -9.52875 -9.23321 -8.22490 -5.71483 -0.09793 0.54657 1.35316 1.46863 1.58840 1.75974 1.99249 2.08895 2.24310 2.41562 2.98361 3.04016 3.25194 3.50521 4.07878 4.26348 4.29421 4.34306 4.39150 4.65627 4.71594 4.84852 5.16894 5.43905 5.62500 5.69785 5.71173 5.85282 5.99857 6.23228 6.82603 6.93639 7.15901 7.49069 7.83615 8.96403 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.020946 B = 0.011539 C = 0.009004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.454037 B = 2425.886435 C = 3108.991099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C 0.222 3.778 3 C 0.216 3.784 4 N -0.548 5.548 5 C -0.250 4.250 6 H 0.022 0.978 7 C -0.019 4.019 8 N -0.944 5.944 9 Si 0.938 3.062 10 H -0.269 1.269 11 H -0.302 1.302 12 H -0.216 1.216 13 C 0.227 3.773 14 C -0.145 4.145 15 C -0.064 4.064 16 C -0.137 4.137 17 C -0.060 4.060 18 C -0.175 4.175 19 C 0.497 3.503 20 O -0.505 6.505 21 O -0.516 6.516 22 H 0.140 0.860 23 H 0.084 0.916 24 H 0.267 0.733 25 H 0.137 0.863 26 H 0.166 0.834 27 H 0.166 0.834 28 H 0.145 0.855 29 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.111 1.617 16.995 18.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.177 5.177 2 C -0.097 4.097 3 C 0.088 3.912 4 N -0.265 5.265 5 C -0.378 4.378 6 H 0.040 0.960 7 C -0.216 4.216 8 N -0.586 5.586 9 Si 0.763 3.237 10 H -0.196 1.196 11 H -0.230 1.230 12 H -0.138 1.138 13 C 0.134 3.866 14 C -0.165 4.165 15 C -0.082 4.082 16 C -0.155 4.155 17 C -0.079 4.079 18 C -0.178 4.178 19 C 0.341 3.659 20 O -0.393 6.393 21 O -0.329 6.329 22 H 0.158 0.842 23 H 0.101 0.899 24 H 0.076 0.924 25 H 0.155 0.845 26 H 0.184 0.816 27 H 0.184 0.816 28 H 0.162 0.838 29 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges 4.767 1.411 16.692 17.417 hybrid contribution -0.587 -0.341 -1.400 1.556 sum 4.180 1.070 15.292 15.889 Atomic orbital electron populations 1.80803 1.15038 1.11243 1.10611 1.30940 0.96922 0.90346 0.91444 1.19500 0.79626 0.87995 1.04065 1.40982 1.71780 1.11986 1.01770 1.18129 1.41031 0.95456 0.83167 0.95983 1.26157 0.98427 1.02848 0.94140 1.69991 1.46575 1.41614 1.00431 0.85960 0.79124 0.78607 0.79962 1.19622 1.23029 1.13784 1.17895 0.91967 0.90412 0.86341 1.21849 0.94835 1.01886 0.97950 1.21713 1.01137 0.92540 0.92854 1.21491 0.91773 1.00453 1.01754 1.21533 0.98158 0.95465 0.92752 1.20014 0.90278 1.05404 1.02126 1.21407 0.87031 0.76597 0.80905 1.91072 1.80702 1.40679 1.26829 1.84480 1.24796 1.63539 1.60109 0.84206 0.89860 0.92429 0.84487 0.81624 0.81619 0.83750 0.72210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -24.55 17.28 20.00 0.35 -24.21 15 2 C 0.22 10.25 12.75 89.44 1.14 11.39 15 3 C 0.22 8.69 5.16 84.57 0.44 9.12 15 4 N -0.55 -24.67 1.06 -520.96 -0.55 -25.23 15 5 C -0.25 -13.95 8.95 84.07 0.75 -13.20 15 6 H 0.02 1.46 8.06 -2.91 -0.02 1.44 15 7 C -0.02 -1.04 5.34 84.89 0.45 -0.59 15 8 N -0.94 -58.81 13.96 21.66 0.30 -58.51 15 9 Si 0.94 40.67 24.94 68.60 1.71 42.38 15 10 H -0.27 -11.16 6.70 99.48 0.67 -10.49 15 11 H -0.30 -13.46 7.11 99.48 0.71 -12.75 15 12 H -0.22 -7.76 7.11 99.48 0.71 -7.05 15 13 C 0.23 8.56 5.00 38.84 0.19 8.76 15 14 C -0.15 -4.20 9.96 22.40 0.22 -3.97 15 15 C -0.06 -1.29 10.03 22.30 0.22 -1.07 15 16 C -0.14 -2.64 10.02 22.26 0.22 -2.41 15 17 C -0.06 -1.56 9.61 22.53 0.22 -1.34 15 18 C -0.17 -6.24 5.89 -19.97 -0.12 -6.36 15 19 C 0.50 20.06 8.26 70.21 0.58 20.64 15 20 O -0.51 -25.19 10.49 19.77 0.21 -24.98 15 21 O -0.52 -16.23 12.68 -56.88 -0.72 -16.95 15 22 H 0.14 4.14 8.00 -2.39 -0.02 4.13 15 23 H 0.08 3.46 2.81 -2.39 -0.01 3.45 15 24 H 0.27 15.59 8.31 -92.71 -0.77 14.82 15 25 H 0.14 3.78 8.06 -2.91 -0.02 3.76 15 26 H 0.17 1.98 8.06 -2.91 -0.02 1.96 15 27 H 0.17 1.84 8.06 -2.91 -0.02 1.81 15 28 H 0.14 3.19 7.61 -2.91 -0.02 3.17 15 29 H 0.42 10.41 9.11 -74.06 -0.67 9.74 15 Total: -1.00 -78.66 260.36 6.11 -72.55 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: 0.49 Total: 13.98 kcal Atomic # 6 Polarization: 16.64 SS G_CDS: 4.33 Total: 20.97 kcal Atomic # 7 Polarization: -108.04 SS G_CDS: 0.09 Total: -107.95 kcal Atomic # 8 Polarization: -41.42 SS G_CDS: -0.51 Total: -41.93 kcal Atomic # 14 Polarization: 40.67 SS G_CDS: 1.71 Total: 42.38 kcal Total: -78.66 6.11 -72.55 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020079912.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.581 kcal (2) G-P(sol) polarization free energy of solvation -78.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds