Wall clock time and date at job start Mon Mar 30 2020 03:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47255 * 351.03410 * 3 2 1 5 5 C 1.36765 * 120.00443 * 263.66854 * 4 3 2 6 6 H 1.08003 * 120.00537 * 204.58241 * 5 4 3 7 7 C 1.38884 * 120.00190 * 24.58681 * 5 4 3 8 8 N 1.31524 * 119.99647 * 15.59426 * 7 5 4 9 9 Si 1.86802 * 120.00502 * 195.59581 * 7 5 4 10 10 H 1.48500 * 109.46968 * 89.99624 * 9 7 5 11 11 H 1.48500 * 109.47115 * 210.00113 * 9 7 5 12 12 H 1.48499 * 109.46657 * 329.99459 * 9 7 5 13 13 C 1.38751 * 119.99600 * 83.67545 * 4 3 2 14 14 C 1.39377 * 119.93776 * 179.72589 * 13 4 3 15 15 C 1.36601 * 120.05910 * 179.75874 * 14 13 4 16 16 C 1.39892 * 119.93820 * 0.53436 * 15 14 13 17 17 C 1.47397 * 120.05836 * 179.69934 * 16 15 14 18 18 O 1.21520 * 119.99333 * 180.02562 * 17 16 15 19 19 O 1.34768 * 120.00262 * 0.02562 * 17 16 15 20 20 C 1.39892 * 119.87658 * 359.71471 * 16 15 14 21 21 C 1.36597 * 119.93739 * 0.02562 * 20 16 15 22 22 H 1.09000 * 109.46494 * 231.04078 * 3 2 1 23 23 H 1.08997 * 109.47373 * 111.04174 * 3 2 1 24 24 H 0.97006 * 119.99903 * 180.02562 * 8 7 5 25 25 H 1.08000 * 119.96246 * 0.02562 * 14 13 4 26 26 H 1.08005 * 120.02818 * 180.22550 * 15 14 13 27 27 H 0.96693 * 116.99806 * 180.02562 * 19 17 16 28 28 H 1.08003 * 120.02462 * 179.97438 * 20 16 15 29 29 H 1.08000 * 119.96997 * 179.97438 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0970 -1.3634 0.2153 5 6 3.4483 -1.7737 1.4717 6 1 4.1532 -2.5821 1.5985 7 6 2.8986 -1.1510 2.5847 8 7 1.8314 -0.3933 2.4542 9 14 3.6747 -1.3892 4.2671 10 1 4.6986 -0.3377 4.4932 11 1 2.6261 -1.2926 5.3141 12 1 4.3163 -2.7269 4.3311 13 6 3.2038 -2.2391 -0.8557 14 6 3.6746 -3.5348 -0.6505 15 6 3.7761 -4.4005 -1.7022 16 6 3.4177 -3.9820 -2.9881 17 6 3.5324 -4.9119 -4.1259 18 8 3.2211 -4.5470 -5.2424 19 8 3.9825 -6.1667 -3.9280 20 6 2.9504 -2.6793 -3.1919 21 6 2.8459 -1.8195 -2.1357 22 1 2.9710 0.6470 0.7991 23 1 2.9713 0.3698 -0.9591 24 1 1.4476 0.0420 3.2315 25 1 3.9553 -3.8559 0.3418 26 1 4.1375 -5.4056 -1.5420 27 1 4.0408 -6.7397 -4.7047 28 1 2.6734 -2.3536 -4.1837 29 1 2.4856 -0.8135 -2.2926 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020079916.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:51 Heat of formation + Delta-G solvation = -25.529142 kcal Electronic energy + Delta-G solvation = -16852.733316 eV Core-core repulsion = 13934.280232 eV Total energy + Delta-G solvation = -2918.453084 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.73807 -38.75811 -36.39816 -35.49675 -34.77493 -32.46272 -30.52299 -29.41617 -27.61678 -25.09031 -22.62616 -21.65226 -20.27379 -17.99243 -17.51135 -17.35684 -16.75159 -16.08211 -15.00746 -14.88076 -14.42410 -14.08524 -13.43733 -13.15880 -12.89187 -12.82226 -12.46295 -12.14201 -11.74787 -11.59178 -11.42306 -11.32457 -11.12050 -10.94811 -10.69087 -10.55462 -10.07568 -9.97666 -9.80932 -8.96314 -8.35392 -7.10223 -6.79685 -4.22355 1.60369 2.32676 2.93141 3.00918 3.04832 3.27519 3.51171 3.69987 3.83213 3.96100 4.46366 4.67969 4.76145 5.13056 5.56010 5.68508 5.84043 5.94454 6.12549 6.22559 6.37493 6.43398 6.77349 6.89314 7.00724 7.09338 7.19547 7.24099 7.43012 7.75923 8.16830 8.50062 8.67998 8.77037 9.05096 10.18932 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.029229 B = 0.006467 C = 0.005505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.735948 B = 4328.741153 C = 5085.348242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C 0.245 3.755 3 C 0.226 3.774 4 N -0.417 5.417 5 C -0.320 4.320 6 H 0.111 0.889 7 C 0.034 3.966 8 N -0.861 5.861 9 Si 0.936 3.064 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.266 1.266 13 C 0.233 3.767 14 C -0.218 4.218 15 C -0.007 4.007 16 C -0.263 4.263 17 C 0.531 3.469 18 O -0.552 6.552 19 O -0.523 6.523 20 C 0.007 3.993 21 C -0.246 4.246 22 H 0.124 0.876 23 H 0.090 0.910 24 H 0.280 0.720 25 H 0.126 0.874 26 H 0.118 0.882 27 H 0.400 0.600 28 H 0.118 0.882 29 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.218 -2.408 -3.092 7.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.147 5.147 2 C -0.073 4.073 3 C 0.099 3.901 4 N -0.100 5.100 5 C -0.447 4.447 6 H 0.128 0.872 7 C -0.173 4.173 8 N -0.495 5.495 9 Si 0.762 3.238 10 H -0.198 1.198 11 H -0.207 1.207 12 H -0.190 1.190 13 C 0.112 3.888 14 C -0.241 4.241 15 C -0.027 4.027 16 C -0.268 4.268 17 C 0.381 3.619 18 O -0.446 6.446 19 O -0.333 6.333 20 C -0.013 4.013 21 C -0.270 4.270 22 H 0.141 0.859 23 H 0.108 0.892 24 H 0.091 0.909 25 H 0.144 0.856 26 H 0.136 0.864 27 H 0.256 0.744 28 H 0.136 0.864 29 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 4.256 -1.676 -2.571 5.247 hybrid contribution 0.603 -0.464 0.500 0.910 sum 4.858 -2.140 -2.071 5.698 Atomic orbital electron populations 1.80899 1.13548 1.07872 1.12333 1.29098 0.95183 0.92968 0.90082 1.18721 0.81973 0.86616 1.02768 1.42609 1.54286 1.07380 1.05706 1.19805 1.24016 1.20603 0.80280 0.87171 1.25497 0.94453 0.96582 1.00759 1.69808 1.17237 1.29871 1.32598 0.85748 0.78664 0.79404 0.80023 1.19790 1.20716 1.19002 1.18265 0.93414 0.89327 0.87784 1.20241 1.11421 0.93033 0.99440 1.20671 0.92826 0.98088 0.91100 1.18237 1.22479 0.94677 0.91451 1.21082 0.72330 0.79797 0.88649 1.90790 1.49819 1.77534 1.26432 1.84623 1.79851 1.25169 1.43700 1.20366 0.91871 0.91083 0.97958 1.20089 1.14313 1.00875 0.91690 0.85855 0.89186 0.90909 0.85628 0.86371 0.74380 0.86437 0.86690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -11.01 18.54 42.16 0.78 -10.23 15 2 C 0.25 5.28 13.04 -20.76 -0.27 5.00 15 3 C 0.23 4.23 4.80 -6.83 -0.03 4.19 15 4 N -0.42 -8.64 2.68 -116.23 -0.31 -8.95 15 5 C -0.32 -6.94 8.96 -15.11 -0.14 -7.08 15 6 H 0.11 2.30 6.21 -52.48 -0.33 1.98 15 7 C 0.03 0.74 4.96 -17.44 -0.09 0.66 15 8 N -0.86 -19.98 9.40 55.49 0.52 -19.46 15 9 Si 0.94 17.37 29.58 -169.99 -5.03 12.34 15 10 H -0.27 -4.97 7.11 56.52 0.40 -4.57 15 11 H -0.28 -5.44 7.11 56.52 0.40 -5.04 15 12 H -0.27 -4.88 7.11 56.52 0.40 -4.48 15 13 C 0.23 4.67 6.47 -83.88 -0.54 4.13 15 14 C -0.22 -4.19 9.20 -39.75 -0.37 -4.55 15 15 C -0.01 -0.12 9.56 -39.55 -0.38 -0.50 15 16 C -0.26 -4.88 5.88 -104.93 -0.62 -5.50 15 17 C 0.53 9.40 8.26 34.46 0.28 9.68 15 18 O -0.55 -10.97 17.12 -19.28 -0.33 -11.30 15 19 O -0.52 -7.32 12.67 -40.68 -0.52 -7.83 15 20 C 0.01 0.13 9.54 -39.56 -0.38 -0.24 15 21 C -0.25 -4.60 9.02 -39.75 -0.36 -4.95 15 22 H 0.12 2.30 6.75 -51.93 -0.35 1.95 15 23 H 0.09 1.35 6.53 -51.93 -0.34 1.01 15 24 H 0.28 6.35 8.31 -40.82 -0.34 6.01 15 25 H 0.13 2.35 6.16 -52.49 -0.32 2.03 15 26 H 0.12 1.86 7.60 -52.48 -0.40 1.46 15 27 H 0.40 3.60 9.11 45.56 0.42 4.01 15 28 H 0.12 2.06 7.64 -52.48 -0.40 1.66 15 29 H 0.12 1.96 6.11 -52.49 -0.32 1.64 15 LS Contribution 265.42 15.07 4.00 4.00 Total: -1.00 -27.98 265.42 -4.94 -32.93 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -1.18 Total: 7.66 kcal Atomic # 6 Polarization: 3.72 SS G_CDS: -2.88 Total: 0.84 kcal Atomic # 7 Polarization: -39.63 SS G_CDS: 0.99 Total: -38.64 kcal Atomic # 8 Polarization: -18.29 SS G_CDS: -0.85 Total: -19.13 kcal Atomic # 14 Polarization: 17.37 SS G_CDS: -5.03 Total: 12.34 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -27.98 -4.94 -32.93 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020079916.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.396 kcal (2) G-P(sol) polarization free energy of solvation -27.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds