Wall clock time and date at job start Mon Mar 30 2020 03:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47255 * 351.03410 * 3 2 1 5 5 C 1.36765 * 120.00443 * 263.66854 * 4 3 2 6 6 H 1.08003 * 120.00537 * 204.58241 * 5 4 3 7 7 C 1.38884 * 120.00190 * 24.58681 * 5 4 3 8 8 N 1.31524 * 119.99647 * 15.59426 * 7 5 4 9 9 Si 1.86802 * 120.00502 * 195.59581 * 7 5 4 10 10 H 1.48500 * 109.46968 * 89.99624 * 9 7 5 11 11 H 1.48500 * 109.47115 * 210.00113 * 9 7 5 12 12 H 1.48499 * 109.46657 * 329.99459 * 9 7 5 13 13 C 1.38751 * 119.99600 * 83.67545 * 4 3 2 14 14 C 1.39377 * 119.93776 * 179.72589 * 13 4 3 15 15 C 1.36601 * 120.05910 * 179.75874 * 14 13 4 16 16 C 1.39892 * 119.93820 * 0.53436 * 15 14 13 17 17 C 1.47397 * 120.05836 * 179.69934 * 16 15 14 18 18 O 1.21520 * 119.99333 * 180.02562 * 17 16 15 19 19 O 1.34768 * 120.00262 * 0.02562 * 17 16 15 20 20 C 1.39892 * 119.87658 * 359.71471 * 16 15 14 21 21 C 1.36597 * 119.93739 * 0.02562 * 20 16 15 22 22 H 1.09000 * 109.46494 * 231.04078 * 3 2 1 23 23 H 1.08997 * 109.47373 * 111.04174 * 3 2 1 24 24 H 0.97006 * 119.99903 * 180.02562 * 8 7 5 25 25 H 1.08000 * 119.96246 * 0.02562 * 14 13 4 26 26 H 1.08005 * 120.02818 * 180.22550 * 15 14 13 27 27 H 0.96693 * 116.99806 * 180.02562 * 19 17 16 28 28 H 1.08003 * 120.02462 * 179.97438 * 20 16 15 29 29 H 1.08000 * 119.96997 * 179.97438 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0970 -1.3634 0.2153 5 6 3.4483 -1.7737 1.4717 6 1 4.1532 -2.5821 1.5985 7 6 2.8986 -1.1510 2.5847 8 7 1.8314 -0.3933 2.4542 9 14 3.6747 -1.3892 4.2671 10 1 4.6986 -0.3377 4.4932 11 1 2.6261 -1.2926 5.3141 12 1 4.3163 -2.7269 4.3311 13 6 3.2038 -2.2391 -0.8557 14 6 3.6746 -3.5348 -0.6505 15 6 3.7761 -4.4005 -1.7022 16 6 3.4177 -3.9820 -2.9881 17 6 3.5324 -4.9119 -4.1259 18 8 3.2211 -4.5470 -5.2424 19 8 3.9825 -6.1667 -3.9280 20 6 2.9504 -2.6793 -3.1919 21 6 2.8459 -1.8195 -2.1357 22 1 2.9710 0.6470 0.7991 23 1 2.9713 0.3698 -0.9591 24 1 1.4476 0.0420 3.2315 25 1 3.9553 -3.8559 0.3418 26 1 4.1375 -5.4056 -1.5420 27 1 4.0408 -6.7397 -4.7047 28 1 2.6734 -2.3536 -4.1837 29 1 2.4856 -0.8135 -2.2926 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020079916.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:50 Heat of formation + Delta-G solvation = -41.699043 kcal Electronic energy + Delta-G solvation = -16853.434495 eV Core-core repulsion = 13934.280232 eV Total energy + Delta-G solvation = -2919.154264 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.14733 -40.21378 -37.91503 -36.82498 -36.45059 -34.04595 -31.99990 -30.91053 -29.15464 -26.62264 -24.08464 -23.12688 -21.70365 -19.55338 -18.96088 -18.75992 -18.24160 -17.55188 -16.42891 -16.36023 -15.92575 -15.53122 -14.91140 -14.65820 -14.40176 -14.32452 -13.97073 -13.70262 -13.30575 -13.16557 -12.97445 -12.81603 -12.55340 -12.38600 -12.18924 -12.08104 -11.57939 -11.41540 -11.32356 -10.54780 -9.81043 -8.66750 -8.38861 -5.87798 0.14696 0.85095 1.47601 1.50882 1.60138 1.81258 1.95374 2.25155 2.34221 2.46104 2.89267 3.15110 3.22705 3.61039 4.12273 4.25013 4.47771 4.57316 4.69640 4.75854 4.93309 4.98518 5.29310 5.38005 5.61195 5.63388 5.75569 5.83965 5.91020 6.24473 6.58690 7.02513 7.21219 7.25255 7.47400 8.57264 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.029229 B = 0.006467 C = 0.005505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.735948 B = 4328.741153 C = 5085.348242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C 0.260 3.740 3 C 0.227 3.773 4 N -0.436 5.436 5 C -0.328 4.328 6 H 0.113 0.887 7 C -0.002 4.002 8 N -0.894 5.894 9 Si 0.993 3.007 10 H -0.266 1.266 11 H -0.296 1.296 12 H -0.261 1.261 13 C 0.222 3.778 14 C -0.230 4.230 15 C 0.001 3.999 16 C -0.268 4.268 17 C 0.539 3.461 18 O -0.576 6.576 19 O -0.511 6.511 20 C 0.000 4.000 21 C -0.246 4.246 22 H 0.122 0.878 23 H 0.129 0.871 24 H 0.273 0.727 25 H 0.127 0.873 26 H 0.142 0.858 27 H 0.425 0.575 28 H 0.127 0.873 29 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.484 -3.515 -3.906 9.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.193 5.193 2 C -0.058 4.058 3 C 0.101 3.899 4 N -0.122 5.122 5 C -0.456 4.456 6 H 0.130 0.870 7 C -0.205 4.205 8 N -0.530 5.530 9 Si 0.818 3.182 10 H -0.191 1.191 11 H -0.223 1.223 12 H -0.185 1.185 13 C 0.104 3.896 14 C -0.253 4.253 15 C -0.019 4.019 16 C -0.273 4.273 17 C 0.389 3.611 18 O -0.471 6.471 19 O -0.324 6.324 20 C -0.020 4.020 21 C -0.269 4.269 22 H 0.140 0.860 23 H 0.146 0.854 24 H 0.083 0.917 25 H 0.144 0.856 26 H 0.160 0.840 27 H 0.285 0.715 28 H 0.144 0.856 29 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 5.557 -2.834 -3.424 7.116 hybrid contribution 0.266 -0.321 0.536 0.679 sum 5.824 -3.154 -2.888 7.225 Atomic orbital electron populations 1.80887 1.14979 1.09384 1.14050 1.29749 0.95826 0.91577 0.88644 1.18974 0.80135 0.86122 1.04696 1.42672 1.55788 1.08164 1.05530 1.19999 1.23897 1.20739 0.80945 0.86958 1.26112 0.94627 0.96562 1.03192 1.69905 1.18745 1.31670 1.32688 0.84882 0.77463 0.79480 0.76404 1.19143 1.22258 1.18541 1.18587 0.93052 0.89809 0.88161 1.20403 1.11768 0.93148 1.00015 1.20875 0.91817 0.98871 0.90359 1.18550 1.21524 0.95059 0.92205 1.20876 0.71829 0.80640 0.87767 1.90791 1.50818 1.78296 1.27203 1.84550 1.78726 1.23911 1.45218 1.20562 0.91746 0.91281 0.98377 1.20272 1.13745 1.01687 0.91195 0.85981 0.85386 0.91664 0.85555 0.84046 0.71484 0.85551 0.85258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -24.38 18.54 20.01 0.37 -24.01 15 2 C 0.26 11.15 13.04 89.44 1.17 12.32 15 3 C 0.23 8.31 4.80 84.57 0.41 8.71 15 4 N -0.44 -17.71 2.68 -521.65 -1.40 -19.11 15 5 C -0.33 -14.09 8.96 84.08 0.75 -13.33 15 6 H 0.11 4.62 6.21 -2.91 -0.02 4.60 15 7 C 0.00 -0.09 4.96 84.89 0.42 0.33 15 8 N -0.89 -41.97 9.40 21.66 0.20 -41.76 15 9 Si 0.99 35.57 29.58 68.60 2.03 37.60 15 10 H -0.27 -9.17 7.11 99.48 0.71 -8.46 15 11 H -0.30 -11.20 7.11 99.48 0.71 -10.49 15 12 H -0.26 -9.03 7.11 99.48 0.71 -8.33 15 13 C 0.22 8.60 6.47 38.60 0.25 8.85 15 14 C -0.23 -8.44 9.20 22.16 0.20 -8.24 15 15 C 0.00 0.02 9.56 22.29 0.21 0.23 15 16 C -0.27 -9.27 5.88 -20.06 -0.12 -9.39 15 17 C 0.54 17.47 8.26 70.23 0.58 18.05 15 18 O -0.58 -21.45 17.12 19.77 0.34 -21.11 15 19 O -0.51 -12.39 12.67 -56.79 -0.72 -13.11 15 20 C 0.00 0.00 9.54 22.29 0.21 0.22 15 21 C -0.25 -8.72 9.02 22.16 0.20 -8.52 15 22 H 0.12 4.52 6.75 -2.39 -0.02 4.50 15 23 H 0.13 3.60 6.53 -2.39 -0.02 3.58 15 24 H 0.27 12.68 8.31 -92.70 -0.77 11.91 15 25 H 0.13 4.58 6.16 -2.91 -0.02 4.56 15 26 H 0.14 3.97 7.60 -2.91 -0.02 3.95 15 27 H 0.42 5.95 9.11 -74.06 -0.67 5.28 15 28 H 0.13 4.16 7.64 -2.91 -0.02 4.14 15 29 H 0.13 4.13 6.11 -2.91 -0.02 4.11 15 Total: -1.00 -58.58 265.42 5.66 -52.92 By element: Atomic # 1 Polarization: 18.81 SS G_CDS: 0.55 Total: 19.35 kcal Atomic # 6 Polarization: 4.95 SS G_CDS: 4.29 Total: 9.23 kcal Atomic # 7 Polarization: -84.07 SS G_CDS: -0.82 Total: -84.89 kcal Atomic # 8 Polarization: -33.84 SS G_CDS: -0.38 Total: -34.22 kcal Atomic # 14 Polarization: 35.57 SS G_CDS: 2.03 Total: 37.60 kcal Total: -58.58 5.66 -52.92 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020079916.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.221 kcal (2) G-P(sol) polarization free energy of solvation -58.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds