Wall clock time and date at job start Mon Mar 30 2020 03:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30624 * 1 3 3 Si 1.86798 * 119.99864 * 2 1 4 4 H 1.48507 * 109.47141 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47171 * 300.00042 * 3 2 1 6 6 H 1.48505 * 109.47039 * 60.00278 * 3 2 1 7 7 C 1.40134 * 120.00036 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00236 * 180.02562 * 7 2 1 9 9 C 1.41778 * 120.00429 * 359.71904 * 7 2 1 10 10 O 1.21785 * 119.99475 * 355.08784 * 9 7 2 11 11 N 1.34776 * 120.00623 * 175.08326 * 9 7 2 12 12 C 1.47051 * 121.04211 * 4.38391 * 11 9 7 13 13 C 1.50726 * 109.04426 * 221.98777 * 12 11 9 14 14 O 1.21286 * 119.62024 * 151.00707 * 13 12 11 15 15 N 1.34665 * 120.76887 * 330.98607 * 13 12 11 16 16 C 1.39731 * 120.68300 * 2.45118 * 15 13 12 17 17 C 1.38582 * 120.78643 * 193.95257 * 16 15 13 18 18 C 1.38253 * 119.85658 * 180.22349 * 17 16 15 19 19 C 1.38442 * 120.41324 * 0.02906 * 18 17 16 20 20 C 1.38234 * 120.22002 * 359.87207 * 19 18 17 21 21 C 1.38326 * 119.77899 * 359.78739 * 20 19 18 22 22 H 0.97003 * 120.00363 * 0.02562 * 1 2 3 23 23 H 1.08995 * 109.54363 * 341.86169 * 12 11 9 24 24 H 1.09000 * 109.53755 * 102.03670 * 12 11 9 25 25 H 0.96999 * 119.65598 * 182.43497 * 15 13 12 26 26 H 1.07999 * 120.07693 * 0.24179 * 17 16 15 27 27 H 1.08001 * 119.79678 * 180.02562 * 18 17 16 28 28 H 1.07997 * 119.89040 * 179.85779 * 19 18 17 29 29 H 1.08001 * 120.13914 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2402 1.6177 0.0000 4 1 3.7003 1.3464 -0.0006 5 1 1.8814 2.3965 -1.2125 6 1 1.8814 2.3964 1.2126 7 6 2.0069 -1.2136 -0.0005 8 1 3.0870 -1.2136 -0.0001 9 6 1.2981 -2.4415 0.0049 10 8 0.0840 -2.4432 0.1004 11 7 1.9678 -3.6067 -0.0956 12 6 3.4379 -3.6372 -0.1160 13 6 3.8950 -4.6275 -1.1562 14 8 4.9584 -4.4616 -1.7155 15 7 3.1366 -5.6947 -1.4717 16 6 1.8853 -5.8806 -0.8784 17 6 1.2301 -7.0982 -0.9711 18 6 -0.0095 -7.2596 -0.3806 19 6 -0.6019 -6.2116 0.3030 20 6 0.0435 -4.9933 0.4036 21 6 1.2872 -4.8246 -0.1779 22 1 -0.4851 0.8400 -0.0004 23 1 3.8197 -2.6466 -0.3629 24 1 3.8099 -3.9376 0.8636 25 1 3.4623 -6.3408 -2.1177 26 1 1.6870 -7.9195 -1.5033 27 1 -0.5191 -8.2091 -0.4532 28 1 -1.5715 -6.3462 0.7592 29 1 -0.4196 -4.1767 0.9376 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020293716.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:55 Heat of formation + Delta-G solvation = -31.845359 kcal Electronic energy + Delta-G solvation = -17524.150733 eV Core-core repulsion = 14605.423757 eV Total energy + Delta-G solvation = -2918.726976 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.72155 -38.43246 -37.41143 -34.96597 -33.96577 -32.76104 -30.09962 -29.15394 -27.21791 -26.21896 -23.01324 -22.35957 -20.47316 -19.00301 -17.72539 -17.36147 -16.66700 -16.13262 -15.61038 -14.83488 -14.63423 -14.25040 -13.87458 -13.60694 -13.26351 -12.85686 -12.72121 -12.51144 -11.80157 -11.49975 -11.30593 -11.16078 -10.94888 -10.53425 -10.38056 -10.34570 -10.08423 -9.30456 -8.97069 -8.03152 -7.75613 -6.95694 -6.50115 -5.04050 1.61620 1.87954 2.80475 2.99288 3.08865 3.13352 3.29595 3.81752 4.07872 4.14286 4.36482 4.69081 5.12265 5.38414 5.46148 5.60834 5.73433 5.82062 5.94007 5.98103 6.36824 6.54245 6.59479 6.93930 7.08477 7.14077 7.19760 7.28897 7.54612 7.86115 8.01402 8.24691 8.68346 8.98287 10.21161 10.40472 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.025887 B = 0.008474 C = 0.006537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.372203 B = 3303.552838 C = 4282.070742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.744 5.744 2 C 0.089 3.911 3 Si 0.913 3.087 4 H -0.259 1.259 5 H -0.273 1.273 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.077 0.923 9 C 0.549 3.451 10 O -0.556 6.556 11 N -0.578 5.578 12 C 0.103 3.897 13 C 0.511 3.489 14 O -0.538 6.538 15 N -0.655 5.655 16 C 0.093 3.907 17 C -0.136 4.136 18 C -0.136 4.136 19 C -0.120 4.120 20 C -0.105 4.105 21 C 0.158 3.842 22 H 0.275 0.725 23 H 0.135 0.865 24 H 0.089 0.911 25 H 0.405 0.595 26 H 0.120 0.880 27 H 0.118 0.882 28 H 0.120 0.880 29 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.427 -8.975 0.527 9.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.371 5.371 2 C -0.135 4.135 3 Si 0.737 3.263 4 H -0.183 1.183 5 H -0.198 1.198 6 H -0.197 1.197 7 C -0.571 4.571 8 H 0.095 0.905 9 C 0.361 3.639 10 O -0.439 6.439 11 N -0.306 5.306 12 C -0.024 4.024 13 C 0.299 3.701 14 O -0.413 6.413 15 N -0.300 5.300 16 C -0.005 4.005 17 C -0.157 4.157 18 C -0.156 4.156 19 C -0.140 4.140 20 C -0.127 4.127 21 C 0.058 3.942 22 H 0.086 0.914 23 H 0.153 0.847 24 H 0.107 0.893 25 H 0.242 0.758 26 H 0.138 0.862 27 H 0.136 0.864 28 H 0.138 0.862 29 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 2.210 -8.443 0.405 8.737 hybrid contribution 0.627 0.370 -0.422 0.841 sum 2.837 -8.074 -0.017 8.557 Atomic orbital electron populations 1.69990 1.07340 1.28144 1.31661 1.25772 0.94696 1.00801 0.92214 0.86206 0.80690 0.80856 0.78571 1.18301 1.19815 1.19750 1.20179 0.94481 0.89708 1.52734 0.90496 1.17105 0.87299 0.81273 0.78217 1.90617 1.13597 1.84774 1.54933 1.46360 1.04341 1.05164 1.74730 1.21875 0.82642 1.00681 0.97188 1.21417 0.83453 0.81256 0.83966 1.90731 1.22847 1.74706 1.53060 1.43451 1.16903 1.26257 1.43356 1.17769 0.87356 0.95435 0.99963 1.20376 0.96682 0.94596 1.04039 1.20736 0.95281 0.99014 1.00560 1.21063 0.99873 0.92874 1.00153 1.21381 0.93939 0.98004 0.99349 1.17815 0.94136 0.85291 0.96909 0.91444 0.84742 0.89293 0.75827 0.86194 0.86418 0.86196 0.82692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -20.65 11.74 55.55 0.65 -20.00 15 2 C 0.09 2.30 5.50 -17.35 -0.10 2.20 15 3 Si 0.91 18.81 29.56 -169.99 -5.02 13.78 15 4 H -0.26 -5.18 7.11 56.52 0.40 -4.78 15 5 H -0.27 -5.56 7.11 56.52 0.40 -5.16 15 6 H -0.27 -5.49 7.11 56.52 0.40 -5.08 15 7 C -0.54 -14.07 8.67 -37.52 -0.33 -14.39 15 8 H 0.08 1.83 5.72 -52.48 -0.30 1.53 15 9 C 0.55 14.76 7.37 -14.91 -0.11 14.65 15 10 O -0.56 -16.54 12.26 5.11 0.06 -16.47 15 11 N -0.58 -13.05 3.00 -117.28 -0.35 -13.40 15 12 C 0.10 1.96 6.38 -4.88 -0.03 1.93 15 13 C 0.51 9.52 7.90 -11.02 -0.09 9.43 15 14 O -0.54 -10.97 17.91 5.55 0.10 -10.87 15 15 N -0.66 -10.78 5.37 -9.69 -0.05 -10.83 15 16 C 0.09 1.61 6.60 -83.42 -0.55 1.06 15 17 C -0.14 -1.96 9.93 -39.45 -0.39 -2.35 15 18 C -0.14 -1.91 10.03 -39.50 -0.40 -2.31 15 19 C -0.12 -1.93 10.04 -39.51 -0.40 -2.33 15 20 C -0.11 -2.12 8.85 -39.55 -0.35 -2.47 15 21 C 0.16 3.27 6.12 -83.51 -0.51 2.76 15 22 H 0.27 6.85 8.29 -40.82 -0.34 6.51 15 23 H 0.13 2.61 5.59 -51.93 -0.29 2.32 15 24 H 0.09 1.48 8.14 -51.93 -0.42 1.06 15 25 H 0.40 5.50 8.82 -40.82 -0.36 5.14 15 26 H 0.12 1.35 8.06 -52.49 -0.42 0.92 15 27 H 0.12 1.28 8.06 -52.49 -0.42 0.86 15 28 H 0.12 1.63 8.06 -52.49 -0.42 1.21 15 29 H 0.16 3.56 5.97 -52.49 -0.31 3.25 15 LS Contribution 255.24 15.07 3.85 3.85 Total: -1.00 -31.87 255.24 -6.10 -37.97 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -2.09 Total: 7.78 kcal Atomic # 6 Polarization: 11.43 SS G_CDS: -3.24 Total: 8.19 kcal Atomic # 7 Polarization: -44.47 SS G_CDS: 0.25 Total: -44.22 kcal Atomic # 8 Polarization: -27.51 SS G_CDS: 0.16 Total: -27.35 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.02 Total: 13.78 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -31.87 -6.10 -37.97 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020293716.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.125 kcal (2) G-P(sol) polarization free energy of solvation -31.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds