Wall clock time and date at job start Mon Mar 30 2020 03:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30624 * 1 3 3 Si 1.86798 * 119.99864 * 2 1 4 4 H 1.48507 * 109.47141 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47171 * 300.00042 * 3 2 1 6 6 H 1.48505 * 109.47039 * 60.00278 * 3 2 1 7 7 C 1.40134 * 120.00036 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00236 * 180.02562 * 7 2 1 9 9 C 1.41778 * 120.00429 * 359.71904 * 7 2 1 10 10 O 1.21785 * 119.99475 * 355.08784 * 9 7 2 11 11 N 1.34776 * 120.00623 * 175.08326 * 9 7 2 12 12 C 1.47051 * 121.04211 * 4.38391 * 11 9 7 13 13 C 1.50726 * 109.04426 * 221.98777 * 12 11 9 14 14 O 1.21286 * 119.62024 * 151.00707 * 13 12 11 15 15 N 1.34665 * 120.76887 * 330.98607 * 13 12 11 16 16 C 1.39731 * 120.68300 * 2.45118 * 15 13 12 17 17 C 1.38582 * 120.78643 * 193.95257 * 16 15 13 18 18 C 1.38253 * 119.85658 * 180.22349 * 17 16 15 19 19 C 1.38442 * 120.41324 * 0.02906 * 18 17 16 20 20 C 1.38234 * 120.22002 * 359.87207 * 19 18 17 21 21 C 1.38326 * 119.77899 * 359.78739 * 20 19 18 22 22 H 0.97003 * 120.00363 * 0.02562 * 1 2 3 23 23 H 1.08995 * 109.54363 * 341.86169 * 12 11 9 24 24 H 1.09000 * 109.53755 * 102.03670 * 12 11 9 25 25 H 0.96999 * 119.65598 * 182.43497 * 15 13 12 26 26 H 1.07999 * 120.07693 * 0.24179 * 17 16 15 27 27 H 1.08001 * 119.79678 * 180.02562 * 18 17 16 28 28 H 1.07997 * 119.89040 * 179.85779 * 19 18 17 29 29 H 1.08001 * 120.13914 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2402 1.6177 0.0000 4 1 3.7003 1.3464 -0.0006 5 1 1.8814 2.3965 -1.2125 6 1 1.8814 2.3964 1.2126 7 6 2.0069 -1.2136 -0.0005 8 1 3.0870 -1.2136 -0.0001 9 6 1.2981 -2.4415 0.0049 10 8 0.0840 -2.4432 0.1004 11 7 1.9678 -3.6067 -0.0956 12 6 3.4379 -3.6372 -0.1160 13 6 3.8950 -4.6275 -1.1562 14 8 4.9584 -4.4616 -1.7155 15 7 3.1366 -5.6947 -1.4717 16 6 1.8853 -5.8806 -0.8784 17 6 1.2301 -7.0982 -0.9711 18 6 -0.0095 -7.2596 -0.3806 19 6 -0.6019 -6.2116 0.3030 20 6 0.0435 -4.9933 0.4036 21 6 1.2872 -4.8246 -0.1779 22 1 -0.4851 0.8400 -0.0004 23 1 3.8197 -2.6466 -0.3629 24 1 3.8099 -3.9376 0.8636 25 1 3.4623 -6.3408 -2.1177 26 1 1.6870 -7.9195 -1.5033 27 1 -0.5191 -8.2091 -0.4532 28 1 -1.5715 -6.3462 0.7592 29 1 -0.4196 -4.1767 0.9376 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020293716.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:55 Heat of formation + Delta-G solvation = -54.768570 kcal Electronic energy + Delta-G solvation = -17525.144758 eV Core-core repulsion = 14605.423757 eV Total energy + Delta-G solvation = -2919.721001 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.21336 -40.00323 -39.07201 -36.46865 -35.63428 -34.74067 -31.53155 -30.52963 -29.06275 -27.87615 -24.52425 -23.73256 -22.20926 -20.46891 -19.28957 -18.83293 -18.27458 -17.97714 -17.21837 -16.44451 -15.98539 -15.87844 -15.41371 -15.10165 -14.69216 -14.47288 -14.44027 -13.99484 -13.49747 -13.25706 -12.84561 -12.65340 -12.42431 -12.28422 -12.00602 -11.75627 -11.62097 -11.06248 -10.66685 -9.84401 -9.31645 -8.51213 -8.43711 -7.07221 0.24021 0.53521 1.34547 1.36757 1.39302 1.56457 1.91356 2.15849 2.31238 2.43162 2.92685 3.22332 3.51914 3.85610 4.16603 4.20116 4.36788 4.47257 4.60797 4.63543 5.04203 5.08287 5.20438 5.30690 5.60554 5.71950 5.77677 5.86909 5.91966 6.04783 6.38016 6.69119 6.83779 7.11907 8.26004 8.48377 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.025887 B = 0.008474 C = 0.006537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.372203 B = 3303.552838 C = 4282.070742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.036 3.964 3 Si 0.996 3.004 4 H -0.246 1.246 5 H -0.268 1.268 6 H -0.264 1.264 7 C -0.563 4.563 8 H 0.095 0.905 9 C 0.535 3.465 10 O -0.601 6.601 11 N -0.587 5.587 12 C 0.100 3.900 13 C 0.515 3.485 14 O -0.557 6.557 15 N -0.641 5.641 16 C 0.088 3.912 17 C -0.118 4.118 18 C -0.116 4.116 19 C -0.118 4.118 20 C -0.134 4.134 21 C 0.116 3.884 22 H 0.281 0.719 23 H 0.127 0.873 24 H 0.111 0.889 25 H 0.422 0.578 26 H 0.166 0.834 27 H 0.166 0.834 28 H 0.143 0.857 29 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.434 -11.031 -0.172 11.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.183 4.183 3 Si 0.815 3.185 4 H -0.169 1.169 5 H -0.192 1.192 6 H -0.188 1.188 7 C -0.597 4.597 8 H 0.113 0.887 9 C 0.347 3.653 10 O -0.487 6.487 11 N -0.315 5.315 12 C -0.026 4.026 13 C 0.303 3.697 14 O -0.435 6.435 15 N -0.286 5.286 16 C -0.010 4.010 17 C -0.139 4.139 18 C -0.135 4.135 19 C -0.137 4.137 20 C -0.156 4.156 21 C 0.018 3.982 22 H 0.091 0.909 23 H 0.145 0.855 24 H 0.129 0.871 25 H 0.262 0.738 26 H 0.184 0.816 27 H 0.184 0.816 28 H 0.160 0.840 29 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 3.230 -10.581 -0.303 11.067 hybrid contribution 0.227 0.798 -0.192 0.852 sum 3.457 -9.782 -0.495 10.387 Atomic orbital electron populations 1.70129 1.09576 1.29663 1.33082 1.26968 0.95490 1.04939 0.90866 0.84978 0.79516 0.75157 0.78843 1.16899 1.19233 1.18826 1.20691 0.95591 0.90344 1.53118 0.88727 1.17411 0.87079 0.82908 0.77911 1.90578 1.15343 1.86130 1.56659 1.45982 1.05535 1.05089 1.74871 1.21960 0.80900 1.00892 0.98840 1.21163 0.83314 0.81637 0.83594 1.90724 1.23716 1.75369 1.53703 1.43243 1.16250 1.25894 1.43214 1.17900 0.87607 0.95648 0.99828 1.20931 0.96266 0.94169 1.02543 1.21273 0.94739 0.99813 0.97664 1.21346 1.00589 0.91789 1.00026 1.21173 0.94727 0.98827 1.00882 1.18114 0.95036 0.85615 0.99436 0.90860 0.85540 0.87094 0.73807 0.81620 0.81619 0.83970 0.87008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -46.26 11.74 21.85 0.26 -46.00 15 2 C 0.04 1.93 5.50 85.33 0.47 2.40 15 3 Si 1.00 39.07 29.56 68.60 2.03 41.09 15 4 H -0.25 -9.01 7.11 99.48 0.71 -8.30 15 5 H -0.27 -10.17 7.11 99.48 0.71 -9.46 15 6 H -0.26 -9.88 7.11 99.48 0.71 -9.17 15 7 C -0.56 -30.64 8.67 23.61 0.20 -30.43 15 8 H 0.09 4.61 5.72 -2.91 -0.02 4.59 15 9 C 0.54 30.39 7.37 85.12 0.63 31.02 15 10 O -0.60 -38.26 12.26 -4.62 -0.06 -38.32 15 11 N -0.59 -27.52 3.00 -643.13 -1.93 -29.45 15 12 C 0.10 3.86 6.38 85.54 0.55 4.40 15 13 C 0.52 18.75 7.90 87.68 0.69 19.44 15 14 O -0.56 -22.19 17.91 -3.05 -0.05 -22.25 15 15 N -0.64 -19.70 5.37 -303.03 -1.63 -21.33 15 16 C 0.09 2.88 6.60 38.42 0.25 3.13 15 17 C -0.12 -2.86 9.93 22.36 0.22 -2.64 15 18 C -0.12 -2.70 10.03 22.32 0.22 -2.48 15 19 C -0.12 -3.61 10.04 22.32 0.22 -3.38 15 20 C -0.13 -5.62 8.85 22.29 0.20 -5.42 15 21 C 0.12 4.87 6.12 38.36 0.23 5.10 15 22 H 0.28 14.64 8.29 -92.71 -0.77 13.87 15 23 H 0.13 5.03 5.59 -2.39 -0.01 5.02 15 24 H 0.11 3.71 8.14 -2.39 -0.02 3.69 15 25 H 0.42 10.09 8.82 -92.71 -0.82 9.27 15 26 H 0.17 2.57 8.06 -2.91 -0.02 2.54 15 27 H 0.17 2.42 8.06 -2.91 -0.02 2.40 15 28 H 0.14 3.59 8.06 -2.91 -0.02 3.57 15 29 H 0.11 5.62 5.97 -2.91 -0.02 5.60 15 Total: -1.00 -74.40 255.24 2.91 -71.49 By element: Atomic # 1 Polarization: 23.22 SS G_CDS: 0.40 Total: 23.62 kcal Atomic # 6 Polarization: 17.24 SS G_CDS: 3.89 Total: 21.14 kcal Atomic # 7 Polarization: -93.48 SS G_CDS: -3.30 Total: -96.78 kcal Atomic # 8 Polarization: -60.45 SS G_CDS: -0.11 Total: -60.57 kcal Atomic # 14 Polarization: 39.07 SS G_CDS: 2.03 Total: 41.09 kcal Total: -74.40 2.91 -71.49 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020293716.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.720 kcal (2) G-P(sol) polarization free energy of solvation -74.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds