Wall clock time and date at job start Mon Mar 30 2020 03:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31258 * 1 3 3 Si 1.86798 * 120.00369 * 2 1 4 4 H 1.48500 * 109.47053 * 275.24597 * 3 2 1 5 5 H 1.48502 * 109.46838 * 35.24024 * 3 2 1 6 6 H 1.48498 * 109.47402 * 155.24223 * 3 2 1 7 7 C 1.39081 * 119.99403 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00157 * 340.64371 * 7 2 1 9 9 N 1.37111 * 119.99397 * 160.64138 * 7 2 1 10 10 C 1.35346 * 119.71782 * 314.78919 * 9 7 2 11 11 O 1.21722 * 121.28541 * 359.97438 * 10 9 7 12 12 C 1.46959 * 117.42341 * 180.02562 * 10 9 7 13 13 C 1.39364 * 121.90337 * 179.97438 * 12 10 9 14 14 C 1.37799 * 119.51736 * 180.02562 * 13 12 10 15 15 C 1.38875 * 120.56749 * 0.03111 * 14 13 12 16 16 C 1.37705 * 120.83010 * 359.96866 * 15 14 13 17 17 C 1.39635 * 119.69433 * 0.02562 * 16 15 14 18 18 N 1.35634 * 121.62692 * 179.97438 * 17 16 15 19 19 C 1.29825 * 121.62648 * 180.02562 * 18 17 16 20 20 C 1.50700 * 118.34554 * 179.97438 * 19 18 17 21 21 O 1.42894 * 109.47633 * 359.97438 * 20 19 18 22 22 H 0.96997 * 119.99848 * 359.97438 * 1 2 3 23 23 H 1.07995 * 120.24299 * 0.02562 * 13 12 10 24 24 H 1.08002 * 119.71595 * 179.97438 * 14 13 12 25 25 H 1.08002 * 119.58004 * 179.69743 * 15 14 13 26 26 H 1.07997 * 120.15410 * 179.97438 * 16 15 14 27 27 H 1.08997 * 109.46937 * 120.00415 * 20 19 18 28 28 H 1.09002 * 109.46922 * 239.99465 * 20 19 18 29 29 H 0.96701 * 114.00585 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3126 0.0000 0.0000 3 14 2.2467 1.6177 0.0000 4 1 2.3833 2.1103 -1.3942 5 1 1.5039 2.6181 0.8079 6 1 3.5952 1.4106 0.5863 7 6 2.0079 -1.2046 0.0005 8 1 1.5136 -2.1132 0.3109 9 7 3.3208 -1.2383 -0.3931 10 6 3.7036 -0.5770 -1.5103 11 8 2.9032 0.0509 -2.1786 12 6 5.1226 -0.6476 -1.8859 13 6 5.6178 -0.0027 -3.0177 14 6 6.9576 -0.1022 -3.3241 15 6 7.8141 -0.8385 -2.5161 16 6 7.3450 -1.4832 -1.3933 17 6 5.9914 -1.3975 -1.0614 18 7 5.4873 -2.0171 0.0348 19 6 4.2287 -1.9379 0.3432 20 6 3.7479 -2.6562 1.5777 21 8 4.8479 -3.3236 2.1994 22 1 -0.4850 0.8400 0.0004 23 1 4.9564 0.5708 -3.6501 24 1 7.3448 0.3959 -4.2007 25 1 8.8605 -0.9098 -2.7739 26 1 8.0207 -2.0531 -0.7729 27 1 3.3194 -1.9352 2.2738 28 1 2.9893 -3.3880 1.3000 29 1 4.6113 -3.8083 3.0020 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000021952546.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:45 Heat of formation + Delta-G solvation = -20.526953 kcal Electronic energy + Delta-G solvation = -17733.705223 eV Core-core repulsion = 14815.469050 eV Total energy + Delta-G solvation = -2918.236173 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.85294 -37.91315 -37.17044 -35.69701 -33.93237 -32.27208 -30.68181 -29.76461 -26.81344 -25.91111 -23.07809 -22.05947 -21.18188 -18.92253 -18.19678 -17.33818 -16.52845 -16.08752 -15.33131 -14.93017 -14.45231 -14.27240 -14.07120 -13.54975 -13.45359 -13.14296 -12.95117 -12.55720 -11.82967 -11.68351 -11.29462 -11.22512 -11.01943 -10.74844 -10.35036 -9.75079 -9.45411 -9.14064 -9.02504 -8.82982 -8.55726 -7.30682 -6.81070 -4.66468 1.23012 1.39597 2.91524 3.06923 3.17245 3.27996 3.53877 3.59723 4.06897 4.49837 4.64187 4.76116 4.89652 5.17847 5.30474 5.40720 5.54757 5.68524 5.83192 5.88629 5.94887 6.25342 6.47121 6.60591 6.83393 6.85197 7.14957 7.32760 7.38248 7.84347 7.96860 8.20878 8.60425 8.90114 9.04593 10.20349 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.020597 B = 0.011987 C = 0.008323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.111748 B = 2335.224394 C = 3363.437883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.109 3.891 3 Si 0.890 3.110 4 H -0.248 1.248 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.386 4.386 8 H 0.120 0.880 9 N -0.371 5.371 10 C 0.498 3.502 11 O -0.511 6.511 12 C -0.214 4.214 13 C -0.040 4.040 14 C -0.168 4.168 15 C -0.086 4.086 16 C -0.125 4.125 17 C 0.166 3.834 18 N -0.533 5.533 19 C 0.364 3.636 20 C 0.144 3.856 21 O -0.550 6.550 22 H 0.285 0.715 23 H 0.127 0.873 24 H 0.121 0.879 25 H 0.122 0.878 26 H 0.130 0.870 27 H 0.083 0.917 28 H 0.075 0.925 29 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.130 -2.348 1.270 9.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.108 4.108 3 Si 0.717 3.283 4 H -0.172 1.172 5 H -0.213 1.213 6 H -0.196 1.196 7 C -0.512 4.512 8 H 0.138 0.862 9 N -0.077 5.077 10 C 0.295 3.705 11 O -0.388 6.388 12 C -0.221 4.221 13 C -0.060 4.060 14 C -0.187 4.187 15 C -0.106 4.106 16 C -0.145 4.145 17 C 0.050 3.950 18 N -0.259 5.259 19 C 0.101 3.899 20 C 0.065 3.935 21 O -0.353 6.353 22 H 0.096 0.904 23 H 0.145 0.855 24 H 0.139 0.861 25 H 0.140 0.860 26 H 0.148 0.852 27 H 0.100 0.900 28 H 0.092 0.908 29 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 9.278 -1.985 0.724 9.515 hybrid contribution -0.658 1.015 -0.135 1.217 sum 8.619 -0.970 0.589 8.694 Atomic orbital electron populations 1.69637 1.06831 1.29710 1.38847 1.25268 0.95059 0.99636 0.90814 0.86597 0.79887 0.82038 0.79821 1.17227 1.21255 1.19562 1.19273 0.83278 0.97950 1.50716 0.86225 1.42413 1.09770 1.37504 1.18037 1.18596 0.88291 0.82845 0.80775 1.90708 1.54677 1.41773 1.51668 1.20794 0.93686 1.06688 1.00967 1.20935 0.95270 0.95404 0.94383 1.20914 0.93307 1.03246 1.01281 1.21058 0.99275 0.96042 0.94195 1.20681 0.93278 1.02314 0.98188 1.18910 0.93894 0.91977 0.90202 1.68516 1.10281 1.28320 1.18763 1.22715 0.84682 0.91415 0.91062 1.20626 0.87513 0.95196 0.90194 1.86618 1.34454 1.70161 1.44081 0.90400 0.85461 0.86140 0.86018 0.85228 0.89962 0.90754 0.77865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -22.46 13.95 55.50 0.77 -21.68 15 2 C 0.11 2.94 4.86 -17.48 -0.08 2.86 15 3 Si 0.89 22.51 25.00 -169.99 -4.25 18.26 15 4 H -0.25 -6.59 6.46 56.52 0.37 -6.23 15 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 15 6 H -0.27 -6.94 7.11 56.52 0.40 -6.54 15 7 C -0.39 -10.06 8.54 -14.88 -0.13 -10.18 15 8 H 0.12 3.04 7.37 -52.49 -0.39 2.66 15 9 N -0.37 -9.28 2.26 -59.56 -0.13 -9.41 15 10 C 0.50 12.93 5.85 -12.47 -0.07 12.86 15 11 O -0.51 -14.38 12.75 5.17 0.07 -14.31 15 12 C -0.21 -4.89 5.89 -104.78 -0.62 -5.51 15 13 C -0.04 -0.79 9.68 -39.32 -0.38 -1.17 15 14 C -0.17 -2.66 10.02 -39.51 -0.40 -3.06 15 15 C -0.09 -1.29 10.00 -39.54 -0.40 -1.69 15 16 C -0.12 -2.20 10.03 -39.26 -0.39 -2.59 15 17 C 0.17 3.58 6.63 -84.49 -0.56 3.02 15 18 N -0.53 -11.87 9.50 -8.10 -0.08 -11.95 15 19 C 0.36 8.13 7.54 -154.88 -1.17 6.96 15 20 C 0.14 2.52 6.20 36.01 0.22 2.74 15 21 O -0.55 -8.61 13.03 -35.23 -0.46 -9.07 15 22 H 0.29 7.26 8.31 -40.82 -0.34 6.92 15 23 H 0.13 2.42 7.83 -52.49 -0.41 2.01 15 24 H 0.12 1.50 8.06 -52.49 -0.42 1.08 15 25 H 0.12 1.37 8.06 -52.49 -0.42 0.94 15 26 H 0.13 2.03 8.06 -52.49 -0.42 1.60 15 27 H 0.08 1.36 8.04 -51.93 -0.42 0.95 15 28 H 0.07 1.19 7.63 -51.93 -0.40 0.80 15 29 H 0.38 3.54 9.12 45.56 0.42 3.96 15 LS Contribution 254.87 15.07 3.84 3.84 Total: -1.00 -32.48 254.87 -5.85 -38.33 By element: Atomic # 1 Polarization: 3.40 SS G_CDS: -1.64 Total: 1.76 kcal Atomic # 6 Polarization: 8.21 SS G_CDS: -3.97 Total: 4.24 kcal Atomic # 7 Polarization: -43.61 SS G_CDS: 0.56 Total: -43.05 kcal Atomic # 8 Polarization: -22.99 SS G_CDS: -0.39 Total: -23.38 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -4.25 Total: 18.26 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -32.48 -5.85 -38.33 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000021952546.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.804 kcal (2) G-P(sol) polarization free energy of solvation -32.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds