Wall clock time and date at job start Mon Mar 30 2020 03:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31258 * 1 3 3 Si 1.86798 * 120.00369 * 2 1 4 4 H 1.48500 * 109.47053 * 275.24597 * 3 2 1 5 5 H 1.48502 * 109.46838 * 35.24024 * 3 2 1 6 6 H 1.48498 * 109.47402 * 155.24223 * 3 2 1 7 7 C 1.39081 * 119.99403 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00157 * 340.64371 * 7 2 1 9 9 N 1.37111 * 119.99397 * 160.64138 * 7 2 1 10 10 C 1.35346 * 119.71782 * 314.78919 * 9 7 2 11 11 O 1.21722 * 121.28541 * 359.97438 * 10 9 7 12 12 C 1.46959 * 117.42341 * 180.02562 * 10 9 7 13 13 C 1.39364 * 121.90337 * 179.97438 * 12 10 9 14 14 C 1.37799 * 119.51736 * 180.02562 * 13 12 10 15 15 C 1.38875 * 120.56749 * 0.03111 * 14 13 12 16 16 C 1.37705 * 120.83010 * 359.96866 * 15 14 13 17 17 C 1.39635 * 119.69433 * 0.02562 * 16 15 14 18 18 N 1.35634 * 121.62692 * 179.97438 * 17 16 15 19 19 C 1.29825 * 121.62648 * 180.02562 * 18 17 16 20 20 C 1.50700 * 118.34554 * 179.97438 * 19 18 17 21 21 O 1.42894 * 109.47633 * 359.97438 * 20 19 18 22 22 H 0.96997 * 119.99848 * 359.97438 * 1 2 3 23 23 H 1.07995 * 120.24299 * 0.02562 * 13 12 10 24 24 H 1.08002 * 119.71595 * 179.97438 * 14 13 12 25 25 H 1.08002 * 119.58004 * 179.69743 * 15 14 13 26 26 H 1.07997 * 120.15410 * 179.97438 * 16 15 14 27 27 H 1.08997 * 109.46937 * 120.00415 * 20 19 18 28 28 H 1.09002 * 109.46922 * 239.99465 * 20 19 18 29 29 H 0.96701 * 114.00585 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3126 0.0000 0.0000 3 14 2.2467 1.6177 0.0000 4 1 2.3833 2.1103 -1.3942 5 1 1.5039 2.6181 0.8079 6 1 3.5952 1.4106 0.5863 7 6 2.0079 -1.2046 0.0005 8 1 1.5136 -2.1132 0.3109 9 7 3.3208 -1.2383 -0.3931 10 6 3.7036 -0.5770 -1.5103 11 8 2.9032 0.0509 -2.1786 12 6 5.1226 -0.6476 -1.8859 13 6 5.6178 -0.0027 -3.0177 14 6 6.9576 -0.1022 -3.3241 15 6 7.8141 -0.8385 -2.5161 16 6 7.3450 -1.4832 -1.3933 17 6 5.9914 -1.3975 -1.0614 18 7 5.4873 -2.0171 0.0348 19 6 4.2287 -1.9379 0.3432 20 6 3.7479 -2.6562 1.5777 21 8 4.8479 -3.3236 2.1994 22 1 -0.4850 0.8400 0.0004 23 1 4.9564 0.5708 -3.6501 24 1 7.3448 0.3959 -4.2007 25 1 8.8605 -0.9098 -2.7739 26 1 8.0207 -2.0531 -0.7729 27 1 3.3194 -1.9352 2.2738 28 1 2.9893 -3.3880 1.3000 29 1 4.6113 -3.8083 3.0020 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000021952546.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:45 Heat of formation + Delta-G solvation = -45.103638 kcal Electronic energy + Delta-G solvation = -17734.770948 eV Core-core repulsion = 14815.469050 eV Total energy + Delta-G solvation = -2919.301898 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.58716 -39.47543 -38.83635 -37.12640 -35.71327 -34.15511 -32.19522 -31.31130 -28.26986 -27.74947 -24.79051 -23.57161 -22.78484 -20.73696 -19.84895 -18.95802 -17.98489 -17.78148 -17.03333 -16.62029 -15.92581 -15.87601 -15.66662 -15.26331 -14.96471 -14.92788 -14.73397 -14.22871 -13.67079 -13.05869 -12.95481 -12.76932 -12.59682 -12.45714 -12.27008 -11.34443 -11.05663 -10.98085 -10.76412 -10.68954 -10.05386 -8.96466 -8.80257 -6.68027 -0.32819 -0.13288 1.03730 1.13844 1.23127 1.28044 1.87238 1.89570 2.11658 2.63578 3.06235 3.15754 3.38783 3.61845 3.92628 4.06780 4.18188 4.35839 4.44804 4.48333 4.55621 4.84983 5.02913 5.17586 5.26941 5.44169 5.45283 5.55175 5.86301 6.04650 6.28615 6.65874 6.99440 7.13586 7.22182 8.23062 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.020597 B = 0.011987 C = 0.008323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.111748 B = 2335.224394 C = 3363.437883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.081 3.919 3 Si 0.926 3.074 4 H -0.276 1.276 5 H -0.263 1.263 6 H -0.281 1.281 7 C -0.390 4.390 8 H 0.117 0.883 9 N -0.387 5.387 10 C 0.479 3.521 11 O -0.555 6.555 12 C -0.240 4.240 13 C -0.067 4.067 14 C -0.139 4.139 15 C -0.063 4.063 16 C -0.123 4.123 17 C 0.132 3.868 18 N -0.531 5.531 19 C 0.352 3.648 20 C 0.152 3.848 21 O -0.560 6.560 22 H 0.289 0.711 23 H 0.121 0.879 24 H 0.166 0.834 25 H 0.179 0.821 26 H 0.153 0.847 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.711 -2.812 1.035 13.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.486 5.486 2 C -0.132 4.132 3 Si 0.753 3.247 4 H -0.202 1.202 5 H -0.189 1.189 6 H -0.206 1.206 7 C -0.516 4.516 8 H 0.135 0.865 9 N -0.096 5.096 10 C 0.277 3.723 11 O -0.436 6.436 12 C -0.247 4.247 13 C -0.087 4.087 14 C -0.157 4.157 15 C -0.083 4.083 16 C -0.142 4.142 17 C 0.018 3.982 18 N -0.255 5.255 19 C 0.088 3.912 20 C 0.072 3.928 21 O -0.368 6.368 22 H 0.100 0.900 23 H 0.139 0.861 24 H 0.184 0.816 25 H 0.196 0.804 26 H 0.171 0.829 27 H 0.108 0.892 28 H 0.106 0.894 29 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 12.909 -2.477 0.537 13.156 hybrid contribution -1.384 1.069 -0.182 1.758 sum 11.526 -1.408 0.354 11.617 Atomic orbital electron populations 1.69658 1.07233 1.30205 1.41473 1.25633 0.95412 1.01049 0.91129 0.86074 0.79060 0.81388 0.78194 1.20198 1.18905 1.20643 1.19251 0.84170 0.97619 1.50542 0.86511 1.42439 1.09835 1.38647 1.18641 1.19238 0.89663 0.82615 0.80801 1.90651 1.55958 1.43897 1.53107 1.20943 0.92332 1.08589 1.02821 1.21133 0.97360 0.96233 0.93937 1.21489 0.91308 1.01059 1.01853 1.21698 1.01703 0.92939 0.91916 1.21112 0.91586 1.02238 0.99265 1.19419 0.95627 0.92853 0.90295 1.68585 1.10169 1.27723 1.19022 1.23537 0.84706 0.90590 0.92330 1.20586 0.87897 0.95555 0.88759 1.86538 1.34045 1.70445 1.45763 0.90009 0.86131 0.81609 0.80409 0.82898 0.89185 0.89354 0.74608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -48.26 13.95 21.68 0.30 -47.96 15 2 C 0.08 4.51 4.86 84.98 0.41 4.93 15 3 Si 0.93 47.96 25.00 68.60 1.71 49.68 15 4 H -0.28 -15.40 6.46 99.48 0.64 -14.75 15 5 H -0.26 -12.37 7.11 99.48 0.71 -11.67 15 6 H -0.28 -14.74 7.11 99.48 0.71 -14.03 15 7 C -0.39 -20.98 8.54 84.07 0.72 -20.26 15 8 H 0.12 6.15 7.37 -2.91 -0.02 6.13 15 9 N -0.39 -19.92 2.26 -460.24 -1.04 -20.96 15 10 C 0.48 25.72 5.85 86.44 0.51 26.23 15 11 O -0.55 -32.84 12.75 -4.42 -0.06 -32.90 15 12 C -0.24 -11.00 5.89 -19.96 -0.12 -11.12 15 13 C -0.07 -2.53 9.68 22.44 0.22 -2.31 15 14 C -0.14 -3.71 10.02 22.32 0.22 -3.49 15 15 C -0.06 -1.51 10.00 22.30 0.22 -1.29 15 16 C -0.12 -3.81 10.03 22.48 0.23 -3.58 15 17 C 0.13 5.49 6.63 39.65 0.26 5.75 15 18 N -0.53 -23.15 9.50 -179.54 -1.71 -24.86 15 19 C 0.35 15.75 7.54 137.94 1.04 16.79 15 20 C 0.15 5.19 6.20 71.24 0.44 5.63 15 21 O -0.56 -16.44 13.03 -148.98 -1.94 -18.38 15 22 H 0.29 15.20 8.31 -92.71 -0.77 14.43 15 23 H 0.12 4.63 7.83 -2.91 -0.02 4.61 15 24 H 0.17 3.01 8.06 -2.91 -0.02 2.98 15 25 H 0.18 2.42 8.06 -2.91 -0.02 2.40 15 26 H 0.15 4.03 8.06 -2.91 -0.02 4.00 15 27 H 0.09 2.94 8.04 -2.39 -0.02 2.92 15 28 H 0.09 2.77 7.63 -2.39 -0.02 2.75 15 29 H 0.40 6.59 9.12 -74.06 -0.68 5.91 15 Total: -1.00 -74.31 254.87 1.88 -72.42 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: 0.46 Total: 5.69 kcal Atomic # 6 Polarization: 13.11 SS G_CDS: 4.15 Total: 17.26 kcal Atomic # 7 Polarization: -91.33 SS G_CDS: -2.44 Total: -93.78 kcal Atomic # 8 Polarization: -49.28 SS G_CDS: -2.00 Total: -51.28 kcal Atomic # 14 Polarization: 47.96 SS G_CDS: 1.71 Total: 49.68 kcal Total: -74.31 1.88 -72.42 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000021952546.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.321 kcal (2) G-P(sol) polarization free energy of solvation -74.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds