Wall clock time and date at job start Mon Mar 30 2020 03:47:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99831 * 2 1 4 4 H 1.48504 * 109.46938 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47198 * 299.99690 * 3 2 1 6 6 H 1.48498 * 109.47360 * 59.99443 * 3 2 1 7 7 C 1.37871 * 119.99848 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00102 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00081 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.46877 * 179.97438 * 9 7 2 11 11 C 1.34773 * 119.99969 * 269.72057 * 10 9 7 12 12 O 1.21259 * 120.00143 * 0.02562 * 11 10 9 13 13 C 1.38256 * 119.99837 * 90.00331 * 10 9 7 14 14 N 1.30717 * 124.94459 * 179.97438 * 13 10 9 15 15 C 1.36089 * 108.71588 * 179.97438 * 14 13 10 16 16 C 1.39573 * 133.68723 * 179.97438 * 15 14 13 17 17 C 1.37753 * 119.72716 * 179.97438 * 16 15 14 18 18 C 1.38658 * 120.40206 * 0.03082 * 17 16 15 19 19 C 1.38003 * 120.46568 * 359.94744 * 18 17 16 20 20 C 1.38564 * 119.89799 * 0.04608 * 19 18 17 21 21 O 1.34440 * 124.94602 * 359.68983 * 13 10 9 22 22 H 0.96998 * 119.99944 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.46978 * 60.00053 * 9 7 2 24 24 H 1.09000 * 109.46976 * 299.99298 * 9 7 2 25 25 H 1.08002 * 120.00129 * 179.97438 * 11 10 9 26 26 H 1.07991 * 120.13741 * 359.97438 * 16 15 14 27 27 H 1.08001 * 119.79584 * 180.02562 * 17 16 15 28 28 H 1.07999 * 119.76720 * 179.97438 * 18 17 16 29 29 H 1.08002 * 120.05427 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2031 -3.6127 0.0005 11 6 2.6367 -4.1285 -1.1666 12 8 2.2391 -3.6708 -2.2168 13 6 2.6522 -4.1381 1.1979 14 7 3.4982 -5.1282 1.3106 15 6 3.7092 -5.3740 2.6324 16 6 4.4949 -6.2938 3.3285 17 6 4.4931 -6.2894 4.7060 18 6 3.7155 -5.3777 5.4037 19 6 2.9344 -4.4625 4.7279 20 6 2.9243 -4.4529 3.3423 21 8 2.2867 -3.7015 2.4158 22 1 -0.4850 0.8400 -0.0004 23 1 0.6247 -2.5570 -0.8897 24 1 0.6241 -2.5567 0.8904 25 1 3.3388 -4.9491 -1.1667 26 1 5.1018 -7.0061 2.7894 27 1 5.1010 -7.0004 5.2458 28 1 3.7215 -5.3836 6.4837 29 1 2.3315 -3.7551 5.2780 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000029463878.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:53 Heat of formation + Delta-G solvation = -4.680024 kcal Electronic energy + Delta-G solvation = -17002.040863 eV Core-core repulsion = 14084.491865 eV Total energy + Delta-G solvation = -2917.548999 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -44.29408 -40.90794 -38.91786 -37.16137 -35.74529 -34.73795 -31.57811 -30.65116 -29.41613 -25.97696 -25.24215 -23.76314 -22.95598 -21.74485 -19.74111 -19.03597 -18.89546 -18.03400 -17.92246 -17.11091 -16.34692 -15.99716 -15.86638 -15.23405 -14.94524 -14.62722 -14.44450 -13.70183 -13.49195 -13.28541 -13.04366 -12.84171 -12.73923 -12.49571 -12.41778 -11.94112 -11.60291 -11.23599 -10.87427 -10.76707 -9.71322 -9.02268 -8.36588 -6.53047 -0.30773 0.28914 0.78123 1.02399 1.33179 1.34563 1.47204 1.83269 2.01113 2.31727 2.74675 2.93667 3.09553 3.57020 3.92644 4.10241 4.24367 4.36575 4.42258 4.61951 4.81380 4.87468 4.96166 5.14045 5.21888 5.41865 5.46394 5.51835 5.75892 5.77501 5.99785 6.49049 6.54890 6.75691 7.17490 8.71991 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.024805 B = 0.006861 C = 0.005815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.532134 B = 4080.152302 C = 4813.988190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.017 3.983 3 Si 0.973 3.027 4 H -0.270 1.270 5 H -0.272 1.272 6 H -0.268 1.268 7 C -0.556 4.556 8 H 0.053 0.947 9 C 0.247 3.753 10 N -0.515 5.515 11 C 0.519 3.481 12 O -0.546 6.546 13 C 0.486 3.514 14 N -0.523 5.523 15 C 0.022 3.978 16 C -0.080 4.080 17 C -0.099 4.099 18 C -0.089 4.089 19 C -0.098 4.098 20 C -0.036 4.036 21 O -0.233 6.233 22 H 0.273 0.727 23 H 0.037 0.963 24 H 0.029 0.971 25 H 0.191 0.809 26 H 0.154 0.846 27 H 0.180 0.820 28 H 0.181 0.819 29 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.968 -12.328 12.588 19.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.184 4.184 3 Si 0.796 3.204 4 H -0.194 1.194 5 H -0.197 1.197 6 H -0.193 1.193 7 C -0.595 4.595 8 H 0.071 0.929 9 C 0.127 3.873 10 N -0.249 5.249 11 C 0.293 3.707 12 O -0.417 6.417 13 C 0.187 3.813 14 N -0.265 5.265 15 C -0.090 4.090 16 C -0.099 4.099 17 C -0.118 4.118 18 C -0.107 4.107 19 C -0.117 4.117 20 C -0.086 4.086 21 O -0.124 6.124 22 H 0.082 0.918 23 H 0.055 0.945 24 H 0.047 0.953 25 H 0.207 0.793 26 H 0.172 0.828 27 H 0.198 0.802 28 H 0.198 0.802 29 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 8.798 -12.225 11.400 18.890 hybrid contribution -0.596 1.671 0.040 1.775 sum 8.202 -10.554 11.440 17.594 Atomic orbital electron populations 1.70028 1.07451 1.28713 1.49608 1.25818 0.95895 1.03034 0.93634 0.85290 0.78520 0.78155 0.78417 1.19440 1.19738 1.19312 1.21508 0.93177 0.91409 1.53369 0.92899 1.19248 0.87546 0.82489 0.98027 1.45869 1.43682 1.33792 1.01568 1.23606 0.81957 0.85385 0.79795 1.90699 1.57649 1.62491 1.30887 1.21525 0.90310 0.88441 0.80995 1.70851 1.19405 1.16797 1.19434 1.20183 1.01355 0.99922 0.87516 1.20658 0.97750 0.96903 0.94592 1.21560 0.98786 0.99216 0.92196 1.21498 0.94249 0.92999 1.01996 1.20332 1.02546 1.02272 0.86522 1.20828 0.99415 0.95519 0.92839 1.84514 1.59927 1.53118 1.14859 0.91840 0.94501 0.95295 0.79345 0.82786 0.80234 0.80197 0.83869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.76 13.29 21.45 0.28 -54.48 15 2 C 0.02 0.97 5.46 84.65 0.46 1.43 15 3 Si 0.97 44.85 29.54 68.60 2.03 46.88 15 4 H -0.27 -12.26 7.11 99.48 0.71 -11.55 15 5 H -0.27 -12.15 7.11 99.48 0.71 -11.44 15 6 H -0.27 -11.74 7.11 99.48 0.71 -11.03 15 7 C -0.56 -32.51 9.39 25.60 0.24 -32.27 15 8 H 0.05 3.11 7.81 -2.91 -0.02 3.08 15 9 C 0.25 13.52 5.02 85.63 0.43 13.95 15 10 N -0.51 -23.78 2.64 -773.59 -2.04 -25.82 15 11 C 0.52 21.63 11.63 129.79 1.51 23.14 15 12 O -0.55 -26.83 16.75 -2.96 -0.05 -26.88 15 13 C 0.49 20.74 8.32 179.15 1.49 22.24 15 14 N -0.52 -19.43 10.54 -306.22 -3.23 -22.66 15 15 C 0.02 0.72 7.23 39.31 0.28 1.00 15 16 C -0.08 -1.74 10.10 22.48 0.23 -1.51 15 17 C -0.10 -1.45 10.02 22.26 0.22 -1.22 15 18 C -0.09 -1.40 10.03 22.31 0.22 -1.18 15 19 C -0.10 -2.41 10.06 22.29 0.22 -2.19 15 20 C -0.04 -1.26 7.42 22.85 0.17 -1.09 15 21 O -0.23 -10.13 10.15 -13.49 -0.14 -10.27 15 22 H 0.27 15.05 8.31 -92.71 -0.77 14.28 15 23 H 0.04 2.19 7.41 -2.39 -0.02 2.18 15 24 H 0.03 1.66 7.68 -2.39 -0.02 1.64 15 25 H 0.19 5.98 7.52 -2.91 -0.02 5.96 15 26 H 0.15 2.63 8.06 -2.92 -0.02 2.61 15 27 H 0.18 1.03 8.06 -2.91 -0.02 1.01 15 28 H 0.18 1.27 8.06 -2.91 -0.02 1.25 15 29 H 0.14 3.11 8.06 -2.91 -0.02 3.09 15 Total: -1.00 -73.36 269.85 3.52 -69.84 By element: Atomic # 1 Polarization: -0.11 SS G_CDS: 1.18 Total: 1.07 kcal Atomic # 6 Polarization: 16.82 SS G_CDS: 5.48 Total: 22.31 kcal Atomic # 7 Polarization: -97.97 SS G_CDS: -4.98 Total: -102.95 kcal Atomic # 8 Polarization: -36.96 SS G_CDS: -0.19 Total: -37.15 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -73.36 3.52 -69.84 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000029463878.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.164 kcal (2) G-P(sol) polarization free energy of solvation -73.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds