Wall clock time and date at job start Mon Mar 30 2020 03:45:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31398 * 1 3 3 Si 1.86797 * 119.99935 * 2 1 4 4 H 1.48506 * 109.47024 * 239.99522 * 3 2 1 5 5 H 1.48495 * 109.47636 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.47131 * 120.00019 * 3 2 1 7 7 C 1.38890 * 119.99757 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99895 * 169.88811 * 7 2 1 9 9 N 1.37287 * 120.00280 * 349.90005 * 7 2 1 10 10 C 1.36592 * 126.40596 * 341.12444 * 9 7 2 11 11 N 1.30066 * 110.03056 * 180.02562 * 10 9 7 12 12 C 1.35970 * 109.75016 * 0.02562 * 11 10 9 13 13 C 1.39694 * 133.41935 * 179.97438 * 12 11 10 14 14 C 1.38217 * 119.95100 * 180.02562 * 13 12 11 15 15 C 1.39482 * 120.25911 * 359.94035 * 14 13 12 16 16 C 1.38452 * 120.20635 * 0.08797 * 15 14 13 17 17 C 1.38498 * 126.41007 * 161.17076 * 9 7 2 18 18 O 1.36201 * 120.69588 * 180.12304 * 15 14 13 19 19 C 1.43155 * 116.71510 * 342.78307 * 18 15 14 20 20 C 1.53472 * 108.22877 * 46.36408 * 19 18 15 21 21 O 1.36219 * 119.07303 * 179.86583 * 14 13 12 22 22 H 0.97002 * 119.99848 * 0.02562 * 1 2 3 23 23 H 1.08002 * 124.98320 * 0.04522 * 10 9 7 24 24 H 1.07994 * 120.02422 * 0.04087 * 13 12 11 25 25 H 1.07998 * 119.99343 * 179.97438 * 16 15 14 26 26 H 1.09001 * 109.71503 * 286.67921 * 19 18 15 27 27 H 1.09001 * 109.71302 * 166.04315 * 19 18 15 28 28 H 1.08997 * 109.70469 * 180.33850 * 20 19 18 29 29 H 1.09000 * 109.73898 * 59.74591 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2479 1.6177 0.0000 4 1 3.1018 1.6963 -1.2125 5 1 1.2831 2.7465 -0.0006 6 1 3.1017 1.6964 1.2125 7 6 2.0084 -1.2029 0.0005 8 1 3.0758 -1.2102 -0.1637 9 7 1.3379 -2.3825 0.2096 10 6 0.1021 -2.5236 0.7741 11 7 -0.2269 -3.7812 0.8174 12 6 0.7714 -4.5359 0.2859 13 6 0.9363 -5.9091 0.0893 14 6 2.0947 -6.3886 -0.4925 15 6 3.1010 -5.5065 -0.8859 16 6 2.9468 -4.1439 -0.6946 17 6 1.7884 -3.6522 -0.1117 18 8 4.2450 -5.9692 -1.4623 19 6 4.5299 -7.3626 -1.2991 20 6 3.2480 -8.1526 -1.5958 21 8 2.2379 -7.7312 -0.6732 22 1 -0.4850 0.8401 -0.0004 23 1 -0.5118 -1.7101 1.1317 24 1 0.1591 -6.5954 0.3913 25 1 3.7283 -3.4640 -1.0002 26 1 4.8515 -7.5547 -0.2754 27 1 5.3149 -7.6612 -1.9938 28 1 3.4368 -9.2190 -1.4726 29 1 2.9205 -7.9530 -2.6161 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000031936312.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:37 Heat of formation + Delta-G solvation = -19.611328 kcal Electronic energy + Delta-G solvation = -17302.934042 eV Core-core repulsion = 14384.737573 eV Total energy + Delta-G solvation = -2918.196469 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.75249 -41.57131 -38.07838 -37.04910 -35.63210 -33.49138 -31.27999 -30.71145 -28.55473 -27.30728 -25.12552 -24.05024 -22.36599 -21.68659 -20.10342 -18.89444 -18.61998 -17.89956 -17.20439 -16.64334 -16.15951 -15.79120 -15.70253 -15.23223 -15.04976 -14.90293 -14.73404 -14.31559 -13.71444 -13.41643 -13.07707 -13.00376 -12.84538 -12.15613 -11.98986 -11.73079 -11.45017 -11.13258 -10.76410 -10.60600 -9.00540 -8.77309 -8.55218 -6.45124 0.09464 0.64000 1.37618 1.43187 1.53495 2.02647 2.07769 2.22465 2.28195 2.87656 2.96931 3.00086 3.43412 3.77243 3.92968 4.10019 4.18557 4.21519 4.51323 4.58144 4.67758 4.72064 4.85574 4.97067 5.09528 5.16871 5.35093 5.50786 5.96967 6.00834 6.26198 6.57237 6.62713 7.25757 7.44929 8.31764 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.038099 B = 0.006524 C = 0.005648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.750070 B = 4290.997378 C = 4956.078228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.007 3.993 3 Si 1.022 2.978 4 H -0.260 1.260 5 H -0.267 1.267 6 H -0.259 1.259 7 C -0.369 4.369 8 H 0.115 0.885 9 N -0.306 5.306 10 C 0.225 3.775 11 N -0.561 5.561 12 C 0.019 3.981 13 C -0.089 4.089 14 C 0.044 3.956 15 C 0.047 3.953 16 C -0.101 4.101 17 C -0.022 4.022 18 O -0.322 6.322 19 C 0.015 3.985 20 C 0.015 3.985 21 O -0.320 6.320 22 H 0.293 0.707 23 H 0.212 0.788 24 H 0.139 0.861 25 H 0.127 0.873 26 H 0.078 0.922 27 H 0.158 0.842 28 H 0.159 0.841 29 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.542 -8.520 -2.939 12.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.200 4.200 3 Si 0.841 3.159 4 H -0.184 1.184 5 H -0.191 1.191 6 H -0.183 1.183 7 C -0.497 4.497 8 H 0.133 0.867 9 N 0.023 4.977 10 C -0.057 4.057 11 N -0.284 5.284 12 C -0.105 4.105 13 C -0.110 4.110 14 C -0.003 4.003 15 C 0.000 4.000 16 C -0.123 4.123 17 C -0.137 4.137 18 O -0.238 6.238 19 C -0.060 4.060 20 C -0.060 4.060 21 O -0.235 6.235 22 H 0.104 0.896 23 H 0.228 0.772 24 H 0.157 0.843 25 H 0.145 0.855 26 H 0.096 0.904 27 H 0.175 0.825 28 H 0.177 0.823 29 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 7.701 -8.549 -2.663 11.810 hybrid contribution 0.697 1.138 -0.350 1.379 sum 8.398 -7.411 -3.013 11.599 Atomic orbital electron populations 1.69835 1.07880 1.31056 1.42027 1.26634 0.96612 1.03822 0.92904 0.84569 0.77678 0.73688 0.79929 1.18445 1.19128 1.18293 1.20313 0.94619 0.82042 1.52681 0.86712 1.41790 1.14049 1.04233 1.37606 1.25548 0.87292 0.94361 0.98469 1.70340 1.28559 1.02064 1.27470 1.18905 0.92458 0.93711 1.05465 1.19146 0.96319 0.91442 1.04047 1.18168 0.94188 0.83273 1.04669 1.18088 0.87391 0.91670 1.02805 1.18866 0.96598 0.92934 1.03862 1.18888 0.98942 0.86785 1.09064 1.86234 1.37582 1.27971 1.71988 1.23986 0.98940 0.78089 1.04962 1.23969 0.86653 1.02489 0.92852 1.86242 1.57299 1.17614 1.62369 0.89630 0.77158 0.84309 0.85482 0.90423 0.82489 0.82321 0.90617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -44.28 10.84 21.65 0.23 -44.05 15 2 C 0.01 0.34 5.38 84.91 0.46 0.79 15 3 Si 1.02 36.89 29.56 68.60 2.03 38.92 15 4 H -0.26 -9.08 7.11 99.48 0.71 -8.37 15 5 H -0.27 -9.19 7.11 99.48 0.71 -8.48 15 6 H -0.26 -9.02 7.11 99.48 0.71 -8.31 15 7 C -0.37 -19.25 10.09 84.00 0.85 -18.40 15 8 H 0.12 5.63 7.85 -2.91 -0.02 5.61 15 9 N -0.31 -16.83 2.95 -346.52 -1.02 -17.86 15 10 C 0.22 12.36 11.18 179.89 2.01 14.37 15 11 N -0.56 -30.56 11.27 -191.57 -2.16 -32.72 15 12 C 0.02 1.00 7.22 39.40 0.28 1.29 15 13 C -0.09 -3.92 10.00 22.62 0.23 -3.70 15 14 C 0.04 1.74 6.49 22.56 0.15 1.89 15 15 C 0.05 1.89 6.49 22.62 0.15 2.04 15 16 C -0.10 -4.62 9.91 22.43 0.22 -4.40 15 17 C -0.02 -1.12 6.81 38.74 0.26 -0.86 15 18 O -0.32 -10.59 10.41 -83.74 -0.87 -11.46 15 19 C 0.01 0.31 7.26 72.14 0.52 0.83 15 20 C 0.01 0.31 7.26 72.14 0.52 0.83 15 21 O -0.32 -10.23 10.41 -83.96 -0.87 -11.11 15 22 H 0.29 13.46 8.31 -92.71 -0.77 12.69 15 23 H 0.21 11.37 6.29 -2.91 -0.02 11.35 15 24 H 0.14 5.60 8.06 -2.91 -0.02 5.58 15 25 H 0.13 5.49 8.06 -2.91 -0.02 5.47 15 26 H 0.08 1.56 8.14 -2.39 -0.02 1.54 15 27 H 0.16 1.88 8.14 -2.39 -0.02 1.86 15 28 H 0.16 1.82 8.14 -2.39 -0.02 1.81 15 29 H 0.08 1.54 8.14 -2.39 -0.02 1.52 15 Total: -1.00 -65.50 255.98 4.17 -61.32 By element: Atomic # 1 Polarization: 21.07 SS G_CDS: 1.18 Total: 22.25 kcal Atomic # 6 Polarization: -10.96 SS G_CDS: 5.65 Total: -5.31 kcal Atomic # 7 Polarization: -91.67 SS G_CDS: -2.95 Total: -94.62 kcal Atomic # 8 Polarization: -20.82 SS G_CDS: -1.75 Total: -22.57 kcal Atomic # 14 Polarization: 36.89 SS G_CDS: 2.03 Total: 38.92 kcal Total: -65.50 4.17 -61.32 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000031936312.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.712 kcal (2) G-P(sol) polarization free energy of solvation -65.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds