Wall clock time and date at job start Mon Mar 30 2020 03:46:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00202 * 2 1 4 4 H 1.48495 * 109.47393 * 240.00163 * 3 2 1 5 5 H 1.48498 * 109.47022 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46843 * 120.00210 * 3 2 1 7 7 C 1.37883 * 119.99664 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99896 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00238 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.47276 * 179.97438 * 9 7 2 11 11 C 1.39055 * 119.99886 * 179.97438 * 10 9 7 12 12 C 1.39033 * 119.86014 * 0.02562 * 11 10 9 13 13 C 1.38208 * 120.39547 * 179.97438 * 12 11 10 14 14 C 1.38838 * 119.83896 * 359.97438 * 13 12 11 15 15 C 1.41124 * 119.93551 * 0.02562 * 14 13 12 16 16 C 1.38256 * 119.90366 * 359.73627 * 15 14 13 17 17 C 1.47872 * 105.83916 * 179.97438 * 15 14 13 18 18 O 1.21450 * 125.75180 * 180.02562 * 17 15 14 19 19 N 1.34532 * 108.49960 * 359.97438 * 17 15 14 20 20 C 1.34499 * 111.10346 * 0.02562 * 19 17 15 21 21 O 1.21499 * 125.66250 * 180.02562 * 20 19 17 22 22 H 0.96998 * 119.99719 * 359.97438 * 1 2 3 23 23 H 1.08997 * 109.47395 * 59.99444 * 9 7 2 24 24 H 1.09002 * 109.46701 * 300.00030 * 9 7 2 25 25 H 0.97000 * 119.99441 * 0.27261 * 10 9 7 26 26 H 1.08000 * 119.80631 * 359.94908 * 12 11 10 27 27 H 1.08003 * 120.08068 * 180.02562 * 13 12 11 28 28 H 1.08002 * 120.17998 * 180.27572 * 16 15 14 29 29 H 0.96998 * 124.44779 * 179.97438 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2029 -3.6128 -0.0018 11 6 1.7393 -4.9237 -0.0015 12 6 0.3718 -5.1744 -0.0005 13 6 -0.1012 -6.4730 -0.0007 14 6 0.7941 -7.5342 -0.0024 15 6 2.1829 -7.2840 -0.0034 16 6 2.6487 -5.9822 -0.0082 17 6 2.8324 -8.6124 -0.0045 18 8 4.0296 -8.8170 -0.0051 19 7 1.8738 -9.5563 -0.0036 20 6 0.6484 -9.0019 -0.0026 21 8 -0.4039 -9.6093 -0.0012 22 1 -0.4849 0.8400 0.0004 23 1 0.6239 -2.5567 -0.8902 24 1 0.6247 -2.5571 0.8897 25 1 3.1566 -3.4355 0.0016 26 1 -0.3252 -4.3494 0.0008 27 1 -1.1645 -6.6619 -0.0004 28 1 3.7107 -5.7856 -0.0134 29 1 2.0440 -10.5112 -0.0044 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000033433367.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:46 Heat of formation + Delta-G solvation = -29.367896 kcal Electronic energy + Delta-G solvation = -16409.967264 eV Core-core repulsion = 13491.347719 eV Total energy + Delta-G solvation = -2918.619545 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.97718 -38.64785 -38.49788 -35.90067 -34.79745 -32.80773 -30.94999 -29.69554 -26.85613 -24.83214 -23.67548 -22.88437 -21.03785 -20.06325 -18.06323 -17.48178 -17.08240 -16.27125 -16.09201 -15.39164 -15.20027 -14.61832 -14.41235 -13.90666 -13.78072 -13.63844 -13.26261 -12.61141 -12.29106 -12.11073 -11.50715 -11.08648 -11.06351 -10.44841 -10.38173 -10.37167 -10.21321 -9.89867 -9.62623 -9.03092 -8.72750 -7.06148 -6.37621 -4.44655 0.33737 1.34234 2.33754 2.69496 3.07290 3.14771 3.20530 3.21447 3.73530 3.95296 4.12707 4.31059 4.52516 4.87219 5.00384 5.30191 5.46933 5.62845 5.89798 5.96924 6.12296 6.31637 6.41488 6.60493 6.70620 6.94208 7.13447 7.27924 7.39481 7.70432 7.83434 7.84813 8.27328 8.63269 9.22816 10.72586 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.046837 B = 0.004461 C = 0.004082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.676123 B = 6275.482612 C = 6858.014473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.067 3.933 3 Si 0.906 3.094 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.548 4.548 8 H 0.064 0.936 9 C 0.243 3.757 10 N -0.703 5.703 11 C 0.260 3.740 12 C -0.196 4.196 13 C 0.020 3.980 14 C -0.246 4.246 15 C -0.093 4.093 16 C -0.132 4.132 17 C 0.581 3.419 18 O -0.477 6.477 19 N -0.685 5.685 20 C 0.586 3.414 21 O -0.488 6.488 22 H 0.269 0.731 23 H 0.030 0.970 24 H 0.030 0.970 25 H 0.399 0.601 26 H 0.143 0.857 27 H 0.134 0.866 28 H 0.134 0.866 29 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.163 -11.584 -0.004 11.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.138 4.138 3 Si 0.733 3.267 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.200 1.200 7 C -0.586 4.586 8 H 0.082 0.918 9 C 0.122 3.878 10 N -0.320 5.320 11 C 0.144 3.856 12 C -0.220 4.220 13 C 0.000 4.000 14 C -0.253 4.253 15 C -0.098 4.098 16 C -0.155 4.155 17 C 0.370 3.630 18 O -0.349 6.349 19 N -0.351 5.351 20 C 0.377 3.623 21 O -0.362 6.362 22 H 0.079 0.921 23 H 0.048 0.952 24 H 0.048 0.952 25 H 0.233 0.767 26 H 0.161 0.839 27 H 0.151 0.849 28 H 0.152 0.848 29 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges 1.926 -11.496 -0.007 11.656 hybrid contribution 0.884 0.524 0.005 1.028 sum 2.810 -10.972 -0.002 11.326 Atomic orbital electron populations 1.69912 1.06103 1.27839 1.48468 1.24919 0.94973 0.99573 0.94293 0.86426 0.79450 0.81974 0.78865 1.19958 1.20937 1.19963 1.21098 0.93419 0.90152 1.53904 0.91789 1.19356 0.88624 0.82381 0.97428 1.45751 1.10697 1.02539 1.73031 1.18163 0.92774 0.85682 0.88958 1.20913 0.94062 0.97089 1.09948 1.20368 0.99048 0.89867 0.90748 1.19830 0.94336 0.92560 1.18613 1.19960 0.94129 0.92821 1.02861 1.20116 0.99598 0.89154 1.06665 1.18471 0.85004 0.85853 0.73663 1.90811 1.13726 1.85655 1.44722 1.44453 1.08905 1.11304 1.70422 1.18317 0.82262 0.88304 0.73370 1.90801 1.29073 1.70278 1.46048 0.92142 0.95209 0.95229 0.76685 0.83900 0.84850 0.84792 0.73665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.73 13.29 55.43 0.74 -23.00 15 2 C 0.07 1.70 5.46 -17.82 -0.10 1.61 15 3 Si 0.91 19.62 29.54 -169.99 -5.02 14.60 15 4 H -0.27 -5.87 7.11 56.52 0.40 -5.47 15 5 H -0.28 -6.14 7.11 56.52 0.40 -5.74 15 6 H -0.27 -5.87 7.11 56.52 0.40 -5.47 15 7 C -0.55 -13.50 9.28 -34.44 -0.32 -13.82 15 8 H 0.06 1.51 7.60 -52.49 -0.40 1.11 15 9 C 0.24 5.39 4.64 -5.20 -0.02 5.36 15 10 N -0.70 -12.56 5.70 -59.77 -0.34 -12.90 15 11 C 0.26 4.16 6.66 -83.80 -0.56 3.60 15 12 C -0.20 -3.03 9.28 -39.30 -0.36 -3.39 15 13 C 0.02 0.27 10.08 -39.37 -0.40 -0.12 15 14 C -0.25 -3.51 6.40 -104.81 -0.67 -4.19 15 15 C -0.09 -1.33 6.40 -104.85 -0.67 -2.00 15 16 C -0.13 -1.91 9.93 -39.09 -0.39 -2.30 15 17 C 0.58 7.97 8.47 -12.43 -0.11 7.86 15 18 O -0.48 -7.49 18.04 5.41 0.10 -7.39 15 19 N -0.69 -8.04 5.76 -13.33 -0.08 -8.11 15 20 C 0.59 8.11 8.44 -12.62 -0.11 8.00 15 21 O -0.49 -7.79 18.04 5.37 0.10 -7.70 15 22 H 0.27 6.84 8.31 -40.82 -0.34 6.50 15 23 H 0.03 0.71 7.93 -51.93 -0.41 0.30 15 24 H 0.03 0.71 7.92 -51.93 -0.41 0.29 15 25 H 0.40 6.53 8.32 -40.82 -0.34 6.19 15 26 H 0.14 2.29 6.66 -52.49 -0.35 1.94 15 27 H 0.13 1.59 8.06 -52.48 -0.42 1.17 15 28 H 0.13 1.73 8.06 -52.49 -0.42 1.31 15 29 H 0.42 3.74 8.96 -40.82 -0.37 3.37 15 LS Contribution 268.54 15.07 4.05 4.05 Total: -1.00 -27.91 268.54 -6.42 -34.33 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -2.26 Total: 5.51 kcal Atomic # 6 Polarization: 4.31 SS G_CDS: -3.70 Total: 0.61 kcal Atomic # 7 Polarization: -44.33 SS G_CDS: 0.32 Total: -44.01 kcal Atomic # 8 Polarization: -15.28 SS G_CDS: 0.19 Total: -15.09 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.02 Total: 14.60 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -27.91 -6.42 -34.33 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033433367.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.960 kcal (2) G-P(sol) polarization free energy of solvation -27.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds