Wall clock time and date at job start Mon Mar 30 2020 03:46:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00202 * 2 1 4 4 H 1.48495 * 109.47393 * 240.00163 * 3 2 1 5 5 H 1.48498 * 109.47022 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46843 * 120.00210 * 3 2 1 7 7 C 1.37883 * 119.99664 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99896 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00238 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.47276 * 179.97438 * 9 7 2 11 11 C 1.39055 * 119.99886 * 179.97438 * 10 9 7 12 12 C 1.39033 * 119.86014 * 0.02562 * 11 10 9 13 13 C 1.38208 * 120.39547 * 179.97438 * 12 11 10 14 14 C 1.38838 * 119.83896 * 359.97438 * 13 12 11 15 15 C 1.41124 * 119.93551 * 0.02562 * 14 13 12 16 16 C 1.38256 * 119.90366 * 359.73627 * 15 14 13 17 17 C 1.47872 * 105.83916 * 179.97438 * 15 14 13 18 18 O 1.21450 * 125.75180 * 180.02562 * 17 15 14 19 19 N 1.34532 * 108.49960 * 359.97438 * 17 15 14 20 20 C 1.34499 * 111.10346 * 0.02562 * 19 17 15 21 21 O 1.21499 * 125.66250 * 180.02562 * 20 19 17 22 22 H 0.96998 * 119.99719 * 359.97438 * 1 2 3 23 23 H 1.08997 * 109.47395 * 59.99444 * 9 7 2 24 24 H 1.09002 * 109.46701 * 300.00030 * 9 7 2 25 25 H 0.97000 * 119.99441 * 0.27261 * 10 9 7 26 26 H 1.08000 * 119.80631 * 359.94908 * 12 11 10 27 27 H 1.08003 * 120.08068 * 180.02562 * 13 12 11 28 28 H 1.08002 * 120.17998 * 180.27572 * 16 15 14 29 29 H 0.96998 * 124.44779 * 179.97438 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2029 -3.6128 -0.0018 11 6 1.7393 -4.9237 -0.0015 12 6 0.3718 -5.1744 -0.0005 13 6 -0.1012 -6.4730 -0.0007 14 6 0.7941 -7.5342 -0.0024 15 6 2.1829 -7.2840 -0.0034 16 6 2.6487 -5.9822 -0.0082 17 6 2.8324 -8.6124 -0.0045 18 8 4.0296 -8.8170 -0.0051 19 7 1.8738 -9.5563 -0.0036 20 6 0.6484 -9.0019 -0.0026 21 8 -0.4039 -9.6093 -0.0012 22 1 -0.4849 0.8400 0.0004 23 1 0.6239 -2.5567 -0.8902 24 1 0.6247 -2.5571 0.8897 25 1 3.1566 -3.4355 0.0016 26 1 -0.3252 -4.3494 0.0008 27 1 -1.1645 -6.6619 -0.0004 28 1 3.7107 -5.7856 -0.0134 29 1 2.0440 -10.5112 -0.0044 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000033433367.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:45 Heat of formation + Delta-G solvation = -49.028929 kcal Electronic energy + Delta-G solvation = -16410.819830 eV Core-core repulsion = 13491.347719 eV Total energy + Delta-G solvation = -2919.472111 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.12516 -39.90807 -39.68842 -37.18481 -36.16456 -34.57090 -32.14626 -31.11208 -28.48101 -26.10893 -24.87571 -24.51362 -22.30062 -21.23675 -19.39973 -18.81326 -18.41636 -17.51693 -17.40189 -16.96323 -16.48919 -16.03496 -15.78286 -15.17118 -15.10305 -14.92489 -14.66419 -14.09261 -13.86874 -13.55927 -12.83063 -12.76624 -12.73688 -12.17449 -11.57030 -11.49425 -11.47677 -11.43521 -11.31969 -10.60624 -10.20312 -8.43383 -8.30375 -6.43076 -0.84598 0.16222 1.13806 1.44750 1.45420 1.53563 1.62766 1.94938 2.31451 2.52049 2.74841 2.97020 3.06447 3.36734 3.73030 4.09083 4.26867 4.40173 4.76000 4.88882 5.00385 5.03714 5.17473 5.23090 5.29289 5.44588 5.48712 5.67143 5.87582 6.13999 6.29615 6.65501 6.78353 6.96766 7.29061 8.80395 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.046837 B = 0.004461 C = 0.004082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.676123 B = 6275.482612 C = 6858.014473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.014 3.986 3 Si 0.971 3.029 4 H -0.268 1.268 5 H -0.285 1.285 6 H -0.268 1.268 7 C -0.560 4.560 8 H 0.073 0.927 9 C 0.262 3.738 10 N -0.709 5.709 11 C 0.247 3.753 12 C -0.203 4.203 13 C 0.025 3.975 14 C -0.244 4.244 15 C -0.098 4.098 16 C -0.122 4.122 17 C 0.592 3.408 18 O -0.493 6.493 19 N -0.667 5.667 20 C 0.595 3.405 21 O -0.505 6.505 22 H 0.269 0.731 23 H 0.008 0.992 24 H 0.008 0.992 25 H 0.406 0.594 26 H 0.131 0.869 27 H 0.155 0.845 28 H 0.151 0.849 29 H 0.438 0.562 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.120 -12.439 -0.006 12.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.186 4.186 3 Si 0.795 3.205 4 H -0.193 1.193 5 H -0.210 1.210 6 H -0.193 1.193 7 C -0.598 4.598 8 H 0.091 0.909 9 C 0.139 3.861 10 N -0.329 5.329 11 C 0.134 3.866 12 C -0.227 4.227 13 C 0.006 3.994 14 C -0.251 4.251 15 C -0.103 4.103 16 C -0.145 4.145 17 C 0.380 3.620 18 O -0.366 6.366 19 N -0.333 5.333 20 C 0.386 3.614 21 O -0.380 6.380 22 H 0.078 0.922 23 H 0.026 0.974 24 H 0.025 0.975 25 H 0.241 0.759 26 H 0.149 0.851 27 H 0.172 0.828 28 H 0.169 0.831 29 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges 2.903 -12.420 -0.009 12.755 hybrid contribution 0.551 0.633 0.005 0.840 sum 3.454 -11.787 -0.003 12.283 Atomic orbital electron populations 1.70031 1.07592 1.28570 1.49841 1.25790 0.95730 1.03056 0.94056 0.85410 0.78154 0.77807 0.79129 1.19256 1.21003 1.19263 1.21545 0.94118 0.91211 1.52957 0.90930 1.18823 0.88674 0.83263 0.95311 1.45325 1.10218 1.02269 1.75125 1.18278 0.93290 0.85250 0.89766 1.20937 0.93909 0.97564 1.10253 1.20522 1.00198 0.89017 0.89695 1.20010 0.94428 0.93050 1.17605 1.20072 0.94276 0.93135 1.02821 1.20198 1.00197 0.88685 1.05432 1.18277 0.84758 0.85750 0.73181 1.90819 1.14425 1.85783 1.45596 1.44211 1.07699 1.12015 1.69399 1.18163 0.82397 0.87954 0.72839 1.90809 1.29800 1.70511 1.46865 0.92191 0.97445 0.97461 0.75860 0.85094 0.82784 0.83119 0.71747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.27 13.29 21.45 0.28 -49.99 15 2 C 0.01 0.73 5.46 84.66 0.46 1.20 15 3 Si 0.97 40.03 29.54 68.60 2.03 42.06 15 4 H -0.27 -10.67 7.11 99.48 0.71 -9.97 15 5 H -0.28 -11.66 7.11 99.48 0.71 -10.95 15 6 H -0.27 -10.68 7.11 99.48 0.71 -9.97 15 7 C -0.56 -27.78 9.28 25.60 0.24 -27.55 15 8 H 0.07 3.38 7.60 -2.91 -0.02 3.36 15 9 C 0.26 11.92 4.64 85.63 0.40 12.32 15 10 N -0.71 -25.37 5.70 -343.02 -1.96 -27.33 15 11 C 0.25 7.78 6.66 38.50 0.26 8.04 15 12 C -0.20 -6.22 9.28 22.45 0.21 -6.02 15 13 C 0.03 0.67 10.08 22.41 0.23 0.90 15 14 C -0.24 -6.47 6.40 -19.99 -0.13 -6.60 15 15 C -0.10 -2.61 6.40 -20.01 -0.13 -2.74 15 16 C -0.12 -3.34 9.93 22.59 0.22 -3.11 15 17 C 0.59 14.77 8.47 86.83 0.74 15.50 15 18 O -0.49 -14.34 18.04 -3.56 -0.06 -14.40 15 19 N -0.67 -13.88 5.76 -432.99 -2.49 -16.37 15 20 C 0.59 15.03 8.44 86.72 0.73 15.76 15 21 O -0.51 -14.98 18.04 -3.71 -0.07 -15.05 15 22 H 0.27 13.91 8.31 -92.71 -0.77 13.14 15 23 H 0.01 0.38 7.93 -2.39 -0.02 0.36 15 24 H 0.01 0.37 7.92 -2.39 -0.02 0.35 15 25 H 0.41 13.11 8.32 -92.71 -0.77 12.34 15 26 H 0.13 4.35 6.66 -2.91 -0.02 4.33 15 27 H 0.15 3.40 8.06 -2.91 -0.02 3.38 15 28 H 0.15 3.59 8.06 -2.91 -0.02 3.56 15 29 H 0.44 6.52 8.96 -92.71 -0.83 5.69 15 Total: -1.00 -58.34 268.54 0.58 -57.77 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: -0.38 Total: 15.62 kcal Atomic # 6 Polarization: 4.47 SS G_CDS: 3.22 Total: 7.70 kcal Atomic # 7 Polarization: -89.53 SS G_CDS: -4.16 Total: -93.69 kcal Atomic # 8 Polarization: -29.32 SS G_CDS: -0.13 Total: -29.45 kcal Atomic # 14 Polarization: 40.03 SS G_CDS: 2.03 Total: 42.06 kcal Total: -58.34 0.58 -57.77 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033433367.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.736 kcal (2) G-P(sol) polarization free energy of solvation -58.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds