Wall clock time and date at job start Mon Mar 30 2020 03:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31038 * 1 3 3 Si 1.86792 * 120.00372 * 2 1 4 4 H 1.48501 * 109.47384 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47139 * 299.99959 * 3 2 1 6 6 H 1.48499 * 109.47022 * 59.99788 * 3 2 1 7 7 C 1.39873 * 119.99494 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00312 * 199.72882 * 7 2 1 9 9 C 1.39826 * 120.00451 * 19.72659 * 7 2 1 10 10 C 1.40077 * 126.89788 * 213.51381 * 9 7 2 11 11 C 1.50706 * 125.94454 * 0.02562 * 10 9 7 12 12 C 1.50701 * 109.46941 * 95.04798 * 11 10 9 13 13 O 1.20821 * 119.99952 * 359.97438 * 12 11 10 14 14 O 1.34229 * 119.99462 * 180.02562 * 12 11 10 15 15 N 1.32041 * 108.11112 * 180.02562 * 10 9 7 16 16 C 1.33392 * 110.02429 * 359.97438 * 15 10 9 17 17 C 1.40365 * 131.74064 * 179.71563 * 16 15 10 18 18 C 1.36575 * 119.43757 * 179.82084 * 17 16 15 19 19 C 1.40142 * 119.70045 * 0.49129 * 18 17 16 20 20 C 1.35345 * 120.12846 * 359.75033 * 19 18 17 21 21 N 1.36242 * 120.57715 * 359.97438 * 20 19 18 22 22 H 0.97003 * 119.99240 * 354.91316 * 1 2 3 23 23 H 1.09004 * 109.46864 * 215.04239 * 11 10 9 24 24 H 1.08994 * 109.47188 * 335.04000 * 11 10 9 25 25 H 0.96706 * 116.99641 * 179.97438 * 14 12 11 26 26 H 1.07990 * 120.27827 * 0.31357 * 17 16 15 27 27 H 1.08004 * 120.15011 * 180.24205 * 18 17 16 28 28 H 1.07997 * 119.93639 * 179.77328 * 19 18 17 29 29 H 1.08001 * 119.71229 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3104 0.0000 0.0000 3 14 2.2444 1.6176 0.0000 4 1 3.7044 1.3462 -0.0006 5 1 1.8857 2.3964 -1.2125 6 1 1.8857 2.3963 1.2125 7 6 2.0096 -1.2114 -0.0005 8 1 3.0422 -1.2391 0.3152 9 6 1.3720 -2.3866 -0.4098 10 6 1.5928 -3.6789 0.0837 11 6 2.5720 -4.0576 1.1649 12 6 1.8615 -4.1011 2.4932 13 8 0.6813 -3.8499 2.5555 14 8 2.5401 -4.4180 3.6071 15 7 0.7938 -4.5074 -0.5633 16 6 0.0611 -3.8346 -1.4521 17 6 -0.9134 -4.2561 -2.3702 18 6 -1.5208 -3.3345 -3.1747 19 6 -1.1574 -1.9843 -3.0812 20 6 -0.2122 -1.5950 -2.1941 21 7 0.3950 -2.5065 -1.3837 22 1 -0.4849 0.8368 0.0745 23 1 2.9934 -5.0388 0.9460 24 1 3.3726 -3.3191 1.2050 25 1 2.0416 -4.4326 4.4357 26 1 -1.1862 -5.2990 -2.4344 27 1 -2.2750 -3.6456 -3.8825 28 1 -1.6326 -1.2529 -3.7180 29 1 0.0630 -0.5528 -2.1280 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036220606.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:53 Heat of formation + Delta-G solvation = -19.511921 kcal Electronic energy + Delta-G solvation = -17511.294333 eV Core-core repulsion = 14593.102175 eV Total energy + Delta-G solvation = -2918.192158 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.02285 -39.35056 -36.15233 -35.31497 -34.08492 -31.90807 -30.93086 -28.61446 -27.78074 -24.81494 -22.41811 -21.35093 -21.11829 -18.94987 -17.84823 -17.36647 -15.79335 -15.77151 -15.56915 -15.09379 -14.85912 -14.47274 -14.09487 -13.50811 -13.13765 -12.52279 -11.99399 -11.91539 -11.78024 -11.44698 -11.16805 -11.03247 -10.77049 -10.75474 -10.46389 -10.32477 -9.77739 -9.69182 -9.24640 -8.72478 -7.48358 -7.04455 -6.60157 -4.42570 1.97582 2.53179 2.93993 2.97383 3.02892 3.03132 3.55330 3.79105 4.09447 4.25105 4.84527 4.91794 5.37503 5.68890 5.78208 5.97308 6.01937 6.09879 6.23458 6.27548 6.62502 6.83267 6.96562 7.03577 7.12468 7.19981 7.27562 7.54539 7.82324 8.13041 8.34845 8.55951 8.65022 8.81957 9.39114 10.01145 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.014786 B = 0.012897 C = 0.007525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.244169 B = 2170.504463 C = 3719.958774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.804 5.804 2 C 0.069 3.931 3 Si 0.912 3.088 4 H -0.258 1.258 5 H -0.271 1.271 6 H -0.273 1.273 7 C -0.457 4.457 8 H 0.099 0.901 9 C 0.203 3.797 10 C -0.072 4.072 11 C 0.007 3.993 12 C 0.473 3.527 13 O -0.496 6.496 14 O -0.531 6.531 15 N -0.466 5.466 16 C 0.130 3.870 17 C -0.073 4.073 18 C -0.144 4.144 19 C -0.206 4.206 20 C 0.133 3.867 21 N -0.377 5.377 22 H 0.285 0.715 23 H 0.099 0.901 24 H 0.109 0.891 25 H 0.398 0.602 26 H 0.124 0.876 27 H 0.116 0.884 28 H 0.124 0.876 29 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.705 -0.718 -0.819 2.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.149 4.149 3 Si 0.736 3.264 4 H -0.181 1.181 5 H -0.196 1.196 6 H -0.198 1.198 7 C -0.492 4.492 8 H 0.117 0.883 9 C 0.091 3.909 10 C -0.204 4.204 11 C -0.032 4.032 12 C 0.314 3.686 13 O -0.382 6.382 14 O -0.343 6.343 15 N -0.185 5.185 16 C -0.108 4.108 17 C -0.094 4.094 18 C -0.168 4.168 19 C -0.228 4.228 20 C 0.010 3.990 21 N -0.055 5.055 22 H 0.096 0.904 23 H 0.117 0.883 24 H 0.127 0.873 25 H 0.255 0.745 26 H 0.142 0.858 27 H 0.134 0.866 28 H 0.142 0.858 29 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 2.375 -1.372 -1.076 2.946 hybrid contribution -0.338 1.830 0.584 1.950 sum 2.037 0.458 -0.491 2.145 Atomic orbital electron populations 1.69914 1.07447 1.29913 1.35910 1.25930 0.94806 1.01414 0.92705 0.86167 0.80982 0.80456 0.78750 1.18111 1.19632 1.19836 1.18475 0.99519 0.89676 1.41514 0.88286 1.18462 0.88936 0.94868 0.88673 1.19809 1.06302 0.90119 1.04216 1.19038 0.95911 1.03672 0.84554 1.23977 0.86401 0.72371 0.85844 1.90718 1.17365 1.43583 1.86487 1.84563 1.47586 1.83259 1.18894 1.69542 1.07901 1.33379 1.07661 1.19971 1.05319 0.80718 1.04778 1.19831 0.95397 0.99310 0.94824 1.20520 1.01936 0.92954 1.01350 1.20351 1.02159 0.96634 1.03705 1.21570 0.93456 0.94906 0.89048 1.42635 1.29894 1.07342 1.25650 0.90425 0.88317 0.87317 0.74500 0.85824 0.86614 0.85827 0.83385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.27 10.58 55.55 0.59 -19.68 15 2 C 0.07 1.64 4.52 -17.28 -0.08 1.56 15 3 Si 0.91 17.70 29.61 -169.99 -5.03 12.67 15 4 H -0.26 -4.88 7.11 56.52 0.40 -4.48 15 5 H -0.27 -5.15 7.11 56.52 0.40 -4.75 15 6 H -0.27 -5.31 7.11 56.52 0.40 -4.91 15 7 C -0.46 -11.46 8.86 -38.38 -0.34 -11.80 15 8 H 0.10 2.30 7.57 -52.48 -0.40 1.90 15 9 C 0.20 5.36 6.26 -83.58 -0.52 4.84 15 10 C -0.07 -1.80 5.70 -81.81 -0.47 -2.27 15 11 C 0.01 0.14 6.22 -29.03 -0.18 -0.04 15 12 C 0.47 9.70 8.32 36.01 0.30 10.00 15 13 O -0.50 -12.53 16.79 -18.75 -0.31 -12.85 15 14 O -0.53 -8.30 13.42 -39.25 -0.53 -8.82 15 15 N -0.47 -12.21 11.23 -8.10 -0.09 -12.30 15 16 C 0.13 3.32 7.77 -155.50 -1.21 2.11 15 17 C -0.07 -1.58 10.10 -39.38 -0.40 -1.97 15 18 C -0.14 -2.76 10.07 -39.47 -0.40 -3.16 15 19 C -0.21 -4.11 10.00 -39.90 -0.40 -4.51 15 20 C 0.13 3.09 9.28 -16.62 -0.15 2.94 15 21 N -0.38 -9.77 2.90 -60.03 -0.17 -9.95 15 22 H 0.28 6.55 8.31 -40.82 -0.34 6.21 15 23 H 0.10 1.73 8.14 -51.93 -0.42 1.30 15 24 H 0.11 1.95 7.56 -51.93 -0.39 1.56 15 25 H 0.40 4.48 9.10 45.56 0.41 4.89 15 26 H 0.12 2.33 8.06 -52.49 -0.42 1.91 15 27 H 0.12 1.78 8.06 -52.48 -0.42 1.36 15 28 H 0.12 2.03 8.06 -52.49 -0.42 1.61 15 29 H 0.15 3.41 6.02 -52.49 -0.32 3.10 15 LS Contribution 263.83 15.07 3.98 3.98 Total: -1.00 -32.62 263.83 -6.94 -39.55 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -1.52 Total: 9.69 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: -3.85 Total: -2.30 kcal Atomic # 7 Polarization: -42.25 SS G_CDS: 0.32 Total: -41.92 kcal Atomic # 8 Polarization: -20.83 SS G_CDS: -0.84 Total: -21.67 kcal Atomic # 14 Polarization: 17.70 SS G_CDS: -5.03 Total: 12.67 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -32.62 -6.94 -39.55 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036220606.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.042 kcal (2) G-P(sol) polarization free energy of solvation -32.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds