Wall clock time and date at job start Mon Mar 30 2020 03:35:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35446 * 126.78016 * 2 1 4 4 C 1.41375 * 103.99317 * 180.13656 * 3 2 1 5 5 C 1.50700 * 126.80907 * 179.88491 * 4 3 2 6 6 S 1.81397 * 109.47317 * 269.71243 * 5 4 3 7 7 O 1.42105 * 110.54275 * 68.37192 * 6 5 4 8 8 O 1.42101 * 110.54298 * 291.62295 * 6 5 4 9 9 N 1.65599 * 104.44825 * 179.97438 * 6 5 4 10 10 C 1.36934 * 119.99793 * 65.00329 * 9 6 5 11 11 H 1.08001 * 120.00375 * 359.97438 * 10 9 6 12 12 C 1.38812 * 119.99820 * 179.97438 * 10 9 6 13 13 N 1.31624 * 119.99884 * 179.97438 * 12 10 9 14 14 Si 1.86798 * 119.99902 * 359.97438 * 12 10 9 15 15 H 1.48499 * 109.47348 * 90.00156 * 14 12 10 16 16 H 1.48507 * 109.46935 * 209.99683 * 14 12 10 17 17 H 1.48494 * 109.47182 * 329.99884 * 14 12 10 18 18 N 1.30181 * 106.38937 * 359.62323 * 4 3 2 19 19 O 1.20917 * 111.60500 * 0.24539 * 18 4 3 20 20 H 1.09002 * 109.47049 * 180.30285 * 1 2 3 21 21 H 1.09000 * 109.47041 * 300.30256 * 1 2 3 22 22 H 1.08998 * 109.46941 * 60.30500 * 1 2 3 23 23 H 1.08013 * 128.00610 * 0.02562 * 3 2 1 24 24 H 1.09004 * 109.47172 * 149.71204 * 5 4 3 25 25 H 1.09000 * 109.46699 * 29.71106 * 5 4 3 26 26 H 0.96999 * 120.00046 * 244.99555 * 9 6 5 27 27 H 0.97002 * 119.99634 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3180 1.0848 0.0000 4 6 3.6214 0.5373 -0.0033 5 6 4.9211 1.3000 -0.0071 6 16 5.4424 1.5979 -1.7188 7 8 4.5609 2.5119 -2.3567 8 8 5.8130 0.3782 -2.3467 9 7 6.8649 2.4341 -1.5779 10 6 7.9595 1.8332 -1.0159 11 1 7.8951 0.8141 -0.6641 12 6 9.1520 2.5339 -0.8983 13 7 10.2040 1.9565 -0.3576 14 14 9.2636 4.2963 -1.5074 15 1 8.8979 5.2244 -0.4073 16 1 10.6518 4.5791 -1.9526 17 1 8.3300 4.4864 -2.6464 18 7 3.4764 -0.7564 0.0034 19 8 2.3095 -1.0736 0.0052 20 1 -0.3633 -1.0277 0.0054 21 1 -0.3633 0.5185 0.8873 22 1 -0.3633 0.5091 -0.8927 23 1 2.0345 2.1271 0.0004 24 1 5.6850 0.7187 0.5094 25 1 4.7841 2.2539 0.5022 26 1 6.9227 3.3494 -1.8936 27 1 11.0374 2.4461 -0.2758 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037714391.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:55 Heat of formation + Delta-G solvation = -10.534961 kcal Electronic energy + Delta-G solvation = -15781.913232 eV Core-core repulsion = 12863.721201 eV Total energy + Delta-G solvation = -2918.192031 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 246.051 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -44.80168 -36.02885 -34.97100 -34.80732 -34.64337 -33.36305 -31.69698 -28.61153 -27.76483 -24.36017 -22.99083 -20.35689 -18.79457 -18.26158 -17.62448 -17.10061 -16.58383 -15.38543 -15.10388 -14.50851 -14.43176 -13.80460 -13.38959 -13.31076 -13.00645 -12.73800 -12.59641 -12.20279 -11.55734 -11.16670 -11.13161 -11.03311 -10.96320 -10.89042 -10.47001 -10.38769 -10.22936 -9.46485 -9.16528 -8.58729 -6.62046 -4.02886 1.06714 1.59548 2.44375 3.02244 3.07718 3.09611 3.20043 3.81422 3.97524 4.28616 4.47826 4.70862 4.95394 5.03516 5.11215 5.24601 5.27530 5.42546 5.60668 5.69646 5.95036 5.97365 6.27717 6.71567 7.41436 8.12308 8.43576 8.74841 8.83793 10.46982 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.048031 B = 0.006317 C = 0.006069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.820577 B = 4431.384169 C = 4612.804291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.043 4.043 3 C -0.228 4.228 4 C 0.035 3.965 5 C -0.578 4.578 6 S 2.533 3.467 7 O -0.999 6.999 8 O -0.954 6.954 9 N -0.965 5.965 10 C -0.265 4.265 11 H 0.125 0.875 12 C 0.046 3.954 13 N -0.852 5.852 14 Si 0.888 3.112 15 H -0.267 1.267 16 H -0.273 1.273 17 H -0.262 1.262 18 N -0.354 5.354 19 O 0.103 5.897 20 H 0.082 0.918 21 H 0.088 0.912 22 H 0.090 0.910 23 H 0.175 0.825 24 H 0.140 0.860 25 H 0.135 0.865 26 H 0.391 0.609 27 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.004 1.590 2.877 14.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.107 4.107 3 C -0.250 4.250 4 C -0.124 4.124 5 C -0.697 4.697 6 S 2.625 3.375 7 O -0.987 6.987 8 O -0.944 6.944 9 N -0.715 5.715 10 C -0.408 4.408 11 H 0.142 0.858 12 C -0.164 4.164 13 N -0.492 5.492 14 Si 0.713 3.287 15 H -0.192 1.192 16 H -0.198 1.198 17 H -0.186 1.186 18 N -0.058 5.058 19 O 0.034 5.966 20 H 0.101 0.899 21 H 0.107 0.893 22 H 0.108 0.892 23 H 0.192 0.808 24 H 0.158 0.842 25 H 0.153 0.847 26 H 0.225 0.775 27 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -13.633 0.100 2.224 13.814 hybrid contribution 0.130 2.143 0.546 2.216 sum -13.504 2.243 2.770 13.966 Atomic orbital electron populations 1.20310 0.83979 1.04524 1.04037 1.24496 0.96427 0.86298 1.03438 1.22484 0.91146 1.01383 1.09963 1.22672 0.95907 0.89911 1.03927 1.29663 0.98829 1.06412 1.34783 1.10513 0.72818 0.74564 0.79567 1.93397 1.66553 1.63575 1.75208 1.93499 1.81482 1.46571 1.72802 1.52567 1.22404 1.26729 1.69821 1.19282 0.87175 0.98602 1.35748 0.85781 1.25253 0.95472 0.99340 0.96335 1.69735 1.02183 1.38091 1.39237 0.86466 0.78964 0.83320 0.79941 1.19193 1.19798 1.18646 1.73926 0.96537 1.16036 1.19303 1.84831 1.11277 1.33096 1.67349 0.89934 0.89297 0.89151 0.80751 0.84165 0.84678 0.77530 0.90920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.54 10.45 36.01 0.38 -0.16 15 2 C -0.04 -0.57 7.49 -35.30 -0.26 -0.84 15 3 C -0.23 -3.46 11.05 -39.39 -0.44 -3.90 15 4 C 0.03 0.66 6.59 -82.10 -0.54 0.11 15 5 C -0.58 -10.86 6.60 36.01 0.24 -10.62 15 6 S 2.53 56.12 5.41 -107.50 -0.58 55.54 15 7 O -1.00 -22.97 18.08 -57.54 -1.04 -24.01 15 8 O -0.95 -24.73 17.76 -57.54 -1.02 -25.75 15 9 N -0.97 -21.92 5.45 31.50 0.17 -21.75 15 10 C -0.26 -6.68 9.98 -15.06 -0.15 -6.83 15 11 H 0.12 3.29 8.05 -52.49 -0.42 2.87 15 12 C 0.05 1.17 5.50 -17.43 -0.10 1.07 15 13 N -0.85 -22.62 13.97 55.49 0.78 -21.85 15 14 Si 0.89 18.68 27.73 -169.99 -4.71 13.96 15 15 H -0.27 -5.39 7.11 56.52 0.40 -4.99 15 16 H -0.27 -5.70 7.11 56.52 0.40 -5.30 15 17 H -0.26 -5.29 6.52 56.52 0.37 -4.93 15 18 N -0.35 -6.95 12.07 33.42 0.40 -6.54 15 19 O 0.10 1.69 11.20 17.17 0.19 1.88 15 20 H 0.08 0.51 8.14 -51.93 -0.42 0.08 15 21 H 0.09 0.50 8.14 -51.93 -0.42 0.08 15 22 H 0.09 0.57 8.14 -51.93 -0.42 0.15 15 23 H 0.18 2.15 8.06 -52.48 -0.42 1.72 15 24 H 0.14 2.65 8.14 -51.92 -0.42 2.23 15 25 H 0.13 2.11 8.14 -51.92 -0.42 1.69 15 26 H 0.39 8.27 5.85 -34.47 -0.20 8.07 15 27 H 0.28 6.86 8.31 -40.82 -0.34 6.52 15 LS Contribution 261.03 15.07 3.93 3.93 Total: -1.00 -32.47 261.03 -5.08 -37.56 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -2.33 Total: 8.20 kcal Atomic # 6 Polarization: -20.29 SS G_CDS: -0.87 Total: -21.16 kcal Atomic # 7 Polarization: -51.49 SS G_CDS: 1.35 Total: -50.14 kcal Atomic # 8 Polarization: -46.01 SS G_CDS: -1.87 Total: -47.88 kcal Atomic # 14 Polarization: 18.68 SS G_CDS: -4.71 Total: 13.96 kcal Atomic # 16 Polarization: 56.12 SS G_CDS: -0.58 Total: 55.54 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -32.47 -5.08 -37.56 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037714391.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.021 kcal (2) G-P(sol) polarization free energy of solvation -32.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds