Wall clock time and date at job start Mon Mar 30 2020 03:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47077 * 2 1 4 4 C 1.50694 * 109.46867 * 119.99720 * 2 1 3 5 5 H 1.08002 * 120.00179 * 119.99762 * 4 2 1 6 6 C 1.37879 * 120.00472 * 300.00079 * 4 2 1 7 7 N 1.31514 * 119.99350 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00608 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.47326 * 270.00340 * 8 6 4 10 10 H 1.48506 * 109.46545 * 30.00090 * 8 6 4 11 11 H 1.48498 * 109.47210 * 149.99801 * 8 6 4 12 12 N 1.46500 * 109.46746 * 239.99818 * 2 1 3 13 13 C 1.34532 * 124.47723 * 120.00784 * 12 2 1 14 14 O 1.21430 * 125.70963 * 0.02562 * 13 12 2 15 15 C 1.47725 * 108.58827 * 179.97438 * 13 12 2 16 16 C 1.39006 * 134.54760 * 179.97438 * 15 13 12 17 17 C 1.38881 * 118.02792 * 180.02562 * 16 15 13 18 18 C 1.38475 * 119.40683 * 0.02562 * 17 16 15 19 19 N 1.31883 * 121.36738 * 359.97438 * 18 17 16 20 20 C 1.32003 * 121.57001 * 0.02562 * 19 18 17 21 21 C 1.34505 * 124.48179 * 299.69717 * 12 2 1 22 22 O 1.21398 * 125.71111 * 0.02562 * 21 12 2 23 23 H 1.09007 * 109.47140 * 60.00496 * 1 2 3 24 24 H 1.09000 * 109.47809 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47703 * 300.00645 * 1 2 3 26 26 H 0.97005 * 119.99661 * 179.97438 * 7 6 4 27 27 H 1.08000 * 120.98840 * 0.03594 * 16 15 13 28 28 H 1.07996 * 120.29316 * 179.97438 * 17 16 15 29 29 H 1.08002 * 119.31302 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6531 -1.5885 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 0.9435 0.8303 2.6033 8 14 2.3212 -1.1202 4.0081 9 1 1.3426 -2.1615 4.4119 10 1 3.6292 -1.7582 3.7123 11 1 2.4864 -0.1412 5.1123 12 7 2.0183 -0.6907 -1.1962 13 6 2.7950 -0.1256 -2.1381 14 8 3.1969 1.0203 -2.1316 15 6 3.0783 -1.1326 -3.1811 16 6 3.8045 -1.1311 -4.3664 17 6 3.8445 -2.3041 -5.1088 18 6 3.1682 -3.4222 -4.6505 19 7 2.4861 -3.3972 -3.5220 20 6 2.4170 -2.3075 -2.7802 21 6 1.7542 -1.9753 -1.4949 22 8 1.0832 -2.7347 -0.8264 23 1 -0.3634 0.5138 -0.8901 24 1 -0.3635 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 0.7088 1.1615 3.4843 27 1 4.3224 -0.2440 -4.7001 28 1 4.3974 -2.3437 -6.0356 29 1 3.2000 -4.3335 -5.2292 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050391744.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:39 Heat of formation + Delta-G solvation = -1.744136 kcal Electronic energy + Delta-G solvation = -17431.043527 eV Core-core repulsion = 14513.621838 eV Total energy + Delta-G solvation = -2917.421689 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.97979 -39.23163 -38.02300 -35.40972 -33.99591 -32.67849 -31.66385 -29.21022 -25.37414 -25.13457 -24.68081 -22.38500 -21.36974 -19.33061 -17.98427 -17.11578 -16.49799 -16.38092 -15.72132 -15.19757 -14.84201 -14.42136 -13.82420 -13.75919 -13.49169 -13.37838 -12.91607 -12.72669 -11.85884 -11.46510 -11.07917 -10.91755 -10.68163 -10.35184 -10.19514 -10.19179 -9.93896 -9.51552 -9.43725 -9.26357 -8.62257 -8.49758 -6.18116 -4.25654 0.08650 0.85878 2.19095 2.90188 3.27815 3.33296 3.37013 3.49225 3.53122 3.71056 4.34530 4.47455 4.54517 4.65186 4.72082 5.05018 5.15649 5.19200 5.66666 5.75287 6.22110 6.31078 6.54000 6.75860 6.80102 7.11176 7.45181 7.58530 7.73557 7.79014 7.85666 8.08241 8.31454 8.74961 9.40370 10.88239 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.033644 B = 0.007142 C = 0.006682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.043562 B = 3919.728560 C = 4189.363427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.263 3.737 3 H 0.071 0.929 4 C -0.526 4.526 5 H 0.062 0.938 6 C 0.069 3.931 7 N -0.888 5.888 8 Si 0.907 3.093 9 H -0.277 1.277 10 H -0.273 1.273 11 H -0.284 1.284 12 N -0.546 5.546 13 C 0.571 3.429 14 O -0.470 6.470 15 C -0.193 4.193 16 C -0.009 4.009 17 C -0.161 4.161 18 C 0.117 3.883 19 N -0.433 5.433 20 C 0.102 3.898 21 C 0.577 3.423 22 O -0.426 6.426 23 H 0.014 0.986 24 H 0.047 0.953 25 H 0.103 0.897 26 H 0.266 0.734 27 H 0.151 0.849 28 H 0.150 0.850 29 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.769 -4.498 -14.397 15.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.167 3.833 3 H 0.089 0.911 4 C -0.565 4.565 5 H 0.081 0.919 6 C -0.134 4.134 7 N -0.526 5.526 8 Si 0.734 3.266 9 H -0.203 1.203 10 H -0.198 1.198 11 H -0.210 1.210 12 N -0.287 5.287 13 C 0.358 3.642 14 O -0.342 6.342 15 C -0.199 4.199 16 C -0.035 4.035 17 C -0.181 4.181 18 C -0.040 4.040 19 N -0.143 5.143 20 C -0.042 4.042 21 C 0.361 3.639 22 O -0.293 6.293 23 H 0.033 0.967 24 H 0.066 0.934 25 H 0.122 0.878 26 H 0.076 0.924 27 H 0.168 0.832 28 H 0.168 0.832 29 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 4.032 -4.881 -13.478 14.890 hybrid contribution 0.798 0.258 0.441 0.948 sum 4.830 -4.622 -13.037 14.651 Atomic orbital electron populations 1.22167 0.96545 1.01255 1.01391 1.19389 0.92345 0.93525 0.78047 0.91131 1.21142 1.32611 1.13064 0.89661 0.91940 1.24830 0.94659 0.94875 0.99035 1.69855 1.36025 1.22463 1.24230 0.86347 0.79353 0.79269 0.81652 1.20272 1.19801 1.20967 1.47214 1.45674 1.11785 1.24024 1.18117 0.77940 0.86513 0.81596 1.90745 1.49921 1.17210 1.76360 1.21830 1.02226 0.97645 0.98165 1.21222 0.92991 0.98786 0.90473 1.22395 1.00861 0.93452 1.01400 1.23097 0.91102 0.98565 0.91188 1.66927 1.15752 1.27102 1.04561 1.22162 0.96124 0.89649 0.96268 1.17894 0.80331 0.82358 0.83334 1.90763 1.33510 1.51919 1.53108 0.96686 0.93389 0.87818 0.92367 0.83161 0.83186 0.81287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.82 8.98 37.16 0.33 -3.48 15 2 C 0.26 6.76 2.78 -69.08 -0.19 6.57 15 3 H 0.07 1.93 7.58 -51.93 -0.39 1.54 15 4 C -0.53 -14.62 8.10 -34.44 -0.28 -14.89 15 5 H 0.06 1.77 7.68 -52.49 -0.40 1.37 15 6 C 0.07 1.89 5.30 -17.82 -0.09 1.80 15 7 N -0.89 -24.73 11.32 55.43 0.63 -24.10 15 8 Si 0.91 21.53 29.54 -169.99 -5.02 16.51 15 9 H -0.28 -6.56 7.11 56.52 0.40 -6.16 15 10 H -0.27 -6.47 7.11 56.52 0.40 -6.06 15 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 15 12 N -0.55 -12.35 2.51 -111.59 -0.28 -12.63 15 13 C 0.57 11.58 8.02 -12.49 -0.10 11.48 15 14 O -0.47 -10.32 17.43 5.43 0.09 -10.22 15 15 C -0.19 -3.12 6.42 -104.82 -0.67 -3.80 15 16 C -0.01 -0.10 10.22 -39.06 -0.40 -0.50 15 17 C -0.16 -1.39 10.12 -39.26 -0.40 -1.79 15 18 C 0.12 1.21 11.16 -17.44 -0.19 1.02 15 19 N -0.43 -6.75 10.38 -9.49 -0.10 -6.84 15 20 C 0.10 1.82 7.58 -82.70 -0.63 1.19 15 21 C 0.58 12.60 7.32 -12.20 -0.09 12.51 15 22 O -0.43 -10.40 16.14 5.46 0.09 -10.31 15 23 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 15 24 H 0.05 1.19 6.86 -51.93 -0.36 0.84 15 25 H 0.10 2.71 6.07 -51.93 -0.32 2.40 15 26 H 0.27 7.03 8.31 -40.82 -0.34 6.69 15 27 H 0.15 1.33 8.06 -52.49 -0.42 0.91 15 28 H 0.15 0.67 8.06 -52.49 -0.42 0.24 15 29 H 0.17 1.07 8.06 -52.49 -0.42 0.65 15 LS Contribution 263.45 15.07 3.97 3.97 Total: -1.00 -31.77 263.45 -5.63 -37.40 By element: Atomic # 1 Polarization: -1.58 SS G_CDS: -2.29 Total: -3.88 kcal Atomic # 6 Polarization: 12.82 SS G_CDS: -2.71 Total: 10.11 kcal Atomic # 7 Polarization: -43.83 SS G_CDS: 0.25 Total: -43.58 kcal Atomic # 8 Polarization: -20.72 SS G_CDS: 0.18 Total: -20.54 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -31.77 -5.63 -37.40 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050391744.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.654 kcal (2) G-P(sol) polarization free energy of solvation -31.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds