Wall clock time and date at job start Mon Mar 30 2020 03:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47077 * 2 1 4 4 C 1.50694 * 109.46867 * 119.99720 * 2 1 3 5 5 H 1.08002 * 120.00179 * 119.99762 * 4 2 1 6 6 C 1.37879 * 120.00472 * 300.00079 * 4 2 1 7 7 N 1.31514 * 119.99350 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00608 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.47326 * 270.00340 * 8 6 4 10 10 H 1.48506 * 109.46545 * 30.00090 * 8 6 4 11 11 H 1.48498 * 109.47210 * 149.99801 * 8 6 4 12 12 N 1.46500 * 109.46746 * 239.99818 * 2 1 3 13 13 C 1.34532 * 124.47723 * 120.00784 * 12 2 1 14 14 O 1.21430 * 125.70963 * 0.02562 * 13 12 2 15 15 C 1.47725 * 108.58827 * 179.97438 * 13 12 2 16 16 C 1.39006 * 134.54760 * 179.97438 * 15 13 12 17 17 C 1.38881 * 118.02792 * 180.02562 * 16 15 13 18 18 C 1.38475 * 119.40683 * 0.02562 * 17 16 15 19 19 N 1.31883 * 121.36738 * 359.97438 * 18 17 16 20 20 C 1.32003 * 121.57001 * 0.02562 * 19 18 17 21 21 C 1.34505 * 124.48179 * 299.69717 * 12 2 1 22 22 O 1.21398 * 125.71111 * 0.02562 * 21 12 2 23 23 H 1.09007 * 109.47140 * 60.00496 * 1 2 3 24 24 H 1.09000 * 109.47809 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47703 * 300.00645 * 1 2 3 26 26 H 0.97005 * 119.99661 * 179.97438 * 7 6 4 27 27 H 1.08000 * 120.98840 * 0.03594 * 16 15 13 28 28 H 1.07996 * 120.29316 * 179.97438 * 17 16 15 29 29 H 1.08002 * 119.31302 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6531 -1.5885 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 0.9435 0.8303 2.6033 8 14 2.3212 -1.1202 4.0081 9 1 1.3426 -2.1615 4.4119 10 1 3.6292 -1.7582 3.7123 11 1 2.4864 -0.1412 5.1123 12 7 2.0183 -0.6907 -1.1962 13 6 2.7950 -0.1256 -2.1381 14 8 3.1969 1.0203 -2.1316 15 6 3.0783 -1.1326 -3.1811 16 6 3.8045 -1.1311 -4.3664 17 6 3.8445 -2.3041 -5.1088 18 6 3.1682 -3.4222 -4.6505 19 7 2.4861 -3.3972 -3.5220 20 6 2.4170 -2.3075 -2.7802 21 6 1.7542 -1.9753 -1.4949 22 8 1.0832 -2.7347 -0.8264 23 1 -0.3634 0.5138 -0.8901 24 1 -0.3635 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 0.7088 1.1615 3.4843 27 1 4.3224 -0.2440 -4.7001 28 1 4.3974 -2.3437 -6.0356 29 1 3.2000 -4.3335 -5.2292 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050391744.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:39 Heat of formation + Delta-G solvation = -24.506298 kcal Electronic energy + Delta-G solvation = -17432.030569 eV Core-core repulsion = 14513.621838 eV Total energy + Delta-G solvation = -2918.408730 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.43360 -40.45344 -39.69899 -37.18278 -35.83692 -33.73270 -33.30391 -30.84401 -27.47990 -26.52749 -25.99648 -23.74642 -23.01345 -20.87752 -19.42740 -18.82982 -18.07261 -17.50013 -17.44509 -16.91074 -16.42140 -15.85941 -15.45425 -15.19059 -14.89245 -14.71136 -14.49499 -13.85187 -13.73594 -13.41473 -13.07933 -12.86036 -12.55894 -12.32949 -11.90892 -11.70964 -11.32149 -11.21121 -10.71559 -10.61148 -10.48675 -10.32625 -8.29279 -6.44664 -1.15950 -0.10459 0.88073 1.32555 1.37592 1.38863 1.49414 1.91299 2.25189 2.36757 2.61426 3.00629 3.18525 3.39931 3.68505 3.84672 4.19096 4.36038 4.45512 4.50792 4.73493 4.79920 4.81119 4.92669 5.19656 5.42530 5.42772 5.68601 5.77959 6.04784 6.16424 6.49010 6.61151 6.71112 7.24704 8.76775 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.033644 B = 0.007142 C = 0.006682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.043562 B = 3919.728560 C = 4189.363427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.266 3.734 3 H 0.044 0.956 4 C -0.547 4.547 5 H 0.046 0.954 6 C 0.026 3.974 7 N -0.908 5.908 8 Si 0.967 3.033 9 H -0.274 1.274 10 H -0.273 1.273 11 H -0.270 1.270 12 N -0.563 5.563 13 C 0.567 3.433 14 O -0.498 6.498 15 C -0.200 4.200 16 C -0.002 4.002 17 C -0.117 4.117 18 C 0.122 3.878 19 N -0.460 5.460 20 C 0.077 3.923 21 C 0.570 3.430 22 O -0.473 6.473 23 H 0.033 0.967 24 H 0.036 0.964 25 H 0.086 0.914 26 H 0.272 0.728 27 H 0.182 0.818 28 H 0.213 0.787 29 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.642 -5.751 -17.360 19.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.167 3.833 3 H 0.062 0.938 4 C -0.585 4.585 5 H 0.064 0.936 6 C -0.175 4.175 7 N -0.546 5.546 8 Si 0.791 3.209 9 H -0.200 1.200 10 H -0.198 1.198 11 H -0.195 1.195 12 N -0.304 5.304 13 C 0.357 3.643 14 O -0.372 6.372 15 C -0.206 4.206 16 C -0.027 4.027 17 C -0.136 4.136 18 C -0.034 4.034 19 N -0.171 5.171 20 C -0.066 4.066 21 C 0.357 3.643 22 O -0.343 6.343 23 H 0.052 0.948 24 H 0.055 0.945 25 H 0.105 0.895 26 H 0.081 0.919 27 H 0.199 0.801 28 H 0.230 0.770 29 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 5.915 -6.124 -16.471 18.541 hybrid contribution 0.288 0.601 1.154 1.332 sum 6.204 -5.523 -15.317 17.424 Atomic orbital electron populations 1.21952 0.96104 1.00411 1.01374 1.19003 0.92690 0.92348 0.79224 0.93816 1.21278 1.33122 1.12909 0.91157 0.93558 1.25612 0.94727 0.95555 1.01641 1.69941 1.36315 1.23177 1.25126 0.85424 0.78678 0.78411 0.78377 1.19953 1.19765 1.19459 1.47127 1.46621 1.12692 1.23927 1.18746 0.76681 0.86867 0.81989 1.90707 1.50829 1.18532 1.77149 1.21545 1.04797 0.94931 0.99376 1.21774 0.91375 1.01260 0.88288 1.23080 0.97937 0.90754 1.01872 1.24056 0.88982 1.01121 0.89238 1.66876 1.17437 1.26430 1.06371 1.21300 0.98276 0.91564 0.95413 1.18575 0.79508 0.81510 0.84712 1.90704 1.35705 1.52757 1.55097 0.94843 0.94471 0.89536 0.91912 0.80117 0.77009 0.76516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.28 8.98 71.98 0.65 -6.63 15 2 C 0.27 14.49 2.78 44.24 0.12 14.62 15 3 H 0.04 2.57 7.58 -2.39 -0.02 2.56 15 4 C -0.55 -31.93 8.10 25.60 0.21 -31.72 15 5 H 0.05 2.78 7.68 -2.91 -0.02 2.76 15 6 C 0.03 1.45 5.30 84.66 0.45 1.90 15 7 N -0.91 -52.10 11.32 21.45 0.24 -51.86 15 8 Si 0.97 45.10 29.54 68.60 2.03 47.13 15 9 H -0.27 -12.60 7.11 99.48 0.71 -11.89 15 10 H -0.27 -12.61 7.11 99.48 0.71 -11.90 15 11 H -0.27 -11.89 7.11 99.48 0.71 -11.19 15 12 N -0.56 -26.93 2.51 -743.91 -1.87 -28.80 15 13 C 0.57 23.75 8.02 86.79 0.70 24.45 15 14 O -0.50 -22.58 17.43 -3.50 -0.06 -22.65 15 15 C -0.20 -6.26 6.42 -19.99 -0.13 -6.39 15 16 C 0.00 -0.03 10.22 22.61 0.23 0.20 15 17 C -0.12 -1.21 10.12 22.48 0.23 -0.98 15 18 C 0.12 1.86 11.16 84.74 0.95 2.81 15 19 N -0.46 -13.34 10.38 -183.93 -1.91 -15.25 15 20 C 0.08 2.73 7.58 42.42 0.32 3.05 15 21 C 0.57 26.22 7.32 86.99 0.64 26.86 15 22 O -0.47 -24.58 16.14 -3.39 -0.05 -24.63 15 23 H 0.03 1.54 8.14 -2.38 -0.02 1.52 15 24 H 0.04 1.96 6.86 -2.39 -0.02 1.94 15 25 H 0.09 4.76 6.07 -2.39 -0.01 4.75 15 26 H 0.27 14.59 8.31 -92.70 -0.77 13.82 15 27 H 0.18 2.22 8.06 -2.91 -0.02 2.20 15 28 H 0.21 -0.24 8.06 -2.91 -0.02 -0.26 15 29 H 0.22 1.19 8.06 -2.91 -0.02 1.17 15 Total: -1.00 -76.35 263.45 3.92 -72.43 By element: Atomic # 1 Polarization: -5.73 SS G_CDS: 1.19 Total: -4.54 kcal Atomic # 6 Polarization: 23.82 SS G_CDS: 4.35 Total: 28.17 kcal Atomic # 7 Polarization: -92.37 SS G_CDS: -3.53 Total: -95.91 kcal Atomic # 8 Polarization: -47.16 SS G_CDS: -0.12 Total: -47.28 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -76.35 3.92 -72.43 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050391744.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.919 kcal (2) G-P(sol) polarization free energy of solvation -76.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds