Wall clock time and date at job start Mon Mar 30 2020 03:59:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09007 * 109.46717 * 2 1 4 4 C 1.50695 * 109.47246 * 240.00160 * 2 1 3 5 5 H 1.07999 * 119.99991 * 240.00013 * 4 2 1 6 6 C 1.37885 * 119.99895 * 59.99439 * 4 2 1 7 7 N 1.31510 * 119.99932 * 0.02562 * 6 4 2 8 8 Si 1.86806 * 119.99735 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.46924 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.46796 * 120.00102 * 8 6 4 11 11 H 1.48497 * 109.46582 * 240.00077 * 8 6 4 12 12 N 1.46492 * 109.47464 * 119.99725 * 2 1 3 13 13 C 1.34539 * 124.48332 * 239.72891 * 12 2 1 14 14 O 1.21431 * 125.70461 * 0.24316 * 13 12 2 15 15 C 1.47717 * 108.58911 * 180.26590 * 13 12 2 16 16 C 1.39010 * 134.54396 * 179.97438 * 15 13 12 17 17 C 1.38874 * 118.03149 * 180.02562 * 16 15 13 18 18 C 1.38479 * 119.40129 * 359.97438 * 17 16 15 19 19 N 1.31878 * 121.37493 * 359.97438 * 18 17 16 20 20 C 1.32007 * 121.56239 * 0.04146 * 19 18 17 21 21 C 1.34515 * 124.48156 * 60.02786 * 12 2 1 22 22 O 1.21398 * 125.70622 * 359.73075 * 21 12 2 23 23 H 1.08993 * 109.47105 * 60.00038 * 1 2 3 24 24 H 1.09004 * 109.46465 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47186 * 299.99584 * 1 2 3 26 26 H 0.97005 * 119.99944 * 180.02562 * 7 6 4 27 27 H 1.08006 * 120.98408 * 0.05077 * 16 15 13 28 28 H 1.08001 * 120.29997 * 179.97438 * 17 16 15 29 29 H 1.08000 * 119.30651 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2304 5 1 2.6533 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3214 -1.1203 -4.0080 9 1 3.1466 -2.2868 -3.6038 10 1 1.1661 -1.5867 -4.8160 11 1 3.1465 -0.1872 -4.8165 12 7 2.0184 -0.6905 1.1961 13 6 2.7994 -0.1269 2.1355 14 8 3.2018 1.0188 2.1286 15 6 3.0861 -1.1350 3.1764 16 6 3.8178 -1.1353 4.3584 17 6 3.8606 -2.3091 5.0992 18 6 3.1814 -3.4262 4.6427 19 7 2.4932 -3.3994 3.5180 20 6 2.4216 -2.3088 2.7777 21 6 1.7501 -1.9737 1.4976 22 8 1.0712 -2.7303 0.8341 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 0.7087 1.1614 -3.4844 27 1 4.3374 -0.2487 4.6909 28 1 4.4184 -2.3504 6.0230 29 1 3.2160 -4.3384 5.2199 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050391746.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:41 Heat of formation + Delta-G solvation = -1.802345 kcal Electronic energy + Delta-G solvation = -17431.358030 eV Core-core repulsion = 14513.933817 eV Total energy + Delta-G solvation = -2917.424213 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.97934 -39.23166 -38.02297 -35.40940 -33.99657 -32.67864 -31.66498 -29.20979 -25.37555 -25.13453 -24.68132 -22.38435 -21.37015 -19.33215 -17.98313 -17.11711 -16.49551 -16.38339 -15.72399 -15.19947 -14.84280 -14.41996 -13.81871 -13.76033 -13.49133 -13.37837 -12.91654 -12.73011 -11.86174 -11.46227 -11.08186 -10.94284 -10.66233 -10.35246 -10.19311 -10.18858 -9.93243 -9.51461 -9.43626 -9.26630 -8.61434 -8.50597 -6.18405 -4.25852 0.08651 0.85902 2.19112 2.90150 3.25965 3.33199 3.38809 3.49437 3.53076 3.71097 4.34425 4.47476 4.54536 4.65189 4.72074 5.05014 5.15446 5.19194 5.66666 5.75300 6.22118 6.31119 6.53954 6.75848 6.80179 7.11301 7.45247 7.58539 7.73619 7.79028 7.85612 8.08095 8.31439 8.75108 9.40245 10.87981 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.033572 B = 0.007143 C = 0.006688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.817051 B = 3918.979725 C = 4185.738099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.263 3.737 3 H 0.071 0.929 4 C -0.526 4.526 5 H 0.063 0.937 6 C 0.069 3.931 7 N -0.888 5.888 8 Si 0.906 3.094 9 H -0.272 1.272 10 H -0.280 1.280 11 H -0.282 1.282 12 N -0.546 5.546 13 C 0.571 3.429 14 O -0.470 6.470 15 C -0.193 4.193 16 C -0.009 4.009 17 C -0.161 4.161 18 C 0.117 3.883 19 N -0.433 5.433 20 C 0.102 3.898 21 C 0.577 3.423 22 O -0.426 6.426 23 H 0.103 0.897 24 H 0.047 0.953 25 H 0.014 0.986 26 H 0.266 0.734 27 H 0.151 0.849 28 H 0.150 0.850 29 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.816 -4.519 14.384 15.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.167 3.833 3 H 0.089 0.911 4 C -0.564 4.564 5 H 0.081 0.919 6 C -0.134 4.134 7 N -0.526 5.526 8 Si 0.733 3.267 9 H -0.196 1.196 10 H -0.206 1.206 11 H -0.208 1.208 12 N -0.287 5.287 13 C 0.358 3.642 14 O -0.342 6.342 15 C -0.199 4.199 16 C -0.035 4.035 17 C -0.181 4.181 18 C -0.040 4.040 19 N -0.143 5.143 20 C -0.042 4.042 21 C 0.361 3.639 22 O -0.293 6.293 23 H 0.122 0.878 24 H 0.066 0.934 25 H 0.033 0.967 26 H 0.076 0.924 27 H 0.168 0.832 28 H 0.168 0.832 29 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 4.070 -4.905 13.471 14.903 hybrid contribution 0.801 0.272 -0.449 0.957 sum 4.871 -4.633 13.023 14.655 Atomic orbital electron populations 1.22166 0.96534 1.01271 1.01388 1.19395 0.92364 0.93529 0.78057 0.91137 1.21185 1.32525 1.13065 0.89649 0.91885 1.24834 0.94646 0.94892 0.99046 1.69862 1.36038 1.22525 1.24130 0.86297 0.78726 0.79561 0.82075 1.19625 1.20625 1.20788 1.47215 1.45464 1.11930 1.24091 1.18117 0.77964 0.86515 0.81568 1.90745 1.50053 1.17222 1.76216 1.21827 1.02202 0.97637 0.98200 1.21222 0.92997 0.98778 0.90473 1.22395 1.00863 0.93455 1.01397 1.23097 0.91067 0.98579 0.91209 1.66930 1.15804 1.27041 1.04563 1.22160 0.96114 0.89652 0.96271 1.17897 0.80420 0.82331 0.83268 1.90762 1.33354 1.52040 1.53150 0.87817 0.93362 0.96691 0.92419 0.83161 0.83184 0.81289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.82 8.98 37.16 0.33 -3.48 15 2 C 0.26 6.75 2.78 -69.09 -0.19 6.56 15 3 H 0.07 1.93 7.58 -51.93 -0.39 1.54 15 4 C -0.53 -14.60 8.11 -34.44 -0.28 -14.88 15 5 H 0.06 1.79 7.69 -52.49 -0.40 1.39 15 6 C 0.07 1.89 5.30 -17.82 -0.09 1.79 15 7 N -0.89 -24.72 11.32 55.43 0.63 -24.09 15 8 Si 0.91 21.52 29.54 -169.99 -5.02 16.50 15 9 H -0.27 -6.48 7.11 56.52 0.40 -6.08 15 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 15 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 15 12 N -0.55 -12.35 2.51 -111.58 -0.28 -12.63 15 13 C 0.57 11.58 8.02 -12.49 -0.10 11.48 15 14 O -0.47 -10.31 17.43 5.43 0.09 -10.22 15 15 C -0.19 -3.12 6.42 -104.83 -0.67 -3.80 15 16 C -0.01 -0.10 10.22 -39.06 -0.40 -0.50 15 17 C -0.16 -1.39 10.12 -39.26 -0.40 -1.79 15 18 C 0.12 1.21 11.16 -17.44 -0.19 1.02 15 19 N -0.43 -6.75 10.38 -9.49 -0.10 -6.85 15 20 C 0.10 1.82 7.58 -82.70 -0.63 1.19 15 21 C 0.58 12.60 7.32 -12.20 -0.09 12.51 15 22 O -0.43 -10.40 16.13 5.46 0.09 -10.32 15 23 H 0.10 2.72 6.07 -51.93 -0.32 2.40 15 24 H 0.05 1.20 6.83 -51.93 -0.35 0.85 15 25 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 15 26 H 0.27 7.00 8.31 -40.82 -0.34 6.66 15 27 H 0.15 1.33 8.06 -52.48 -0.42 0.91 15 28 H 0.15 0.67 8.06 -52.49 -0.42 0.24 15 29 H 0.17 1.08 8.06 -52.49 -0.42 0.65 15 LS Contribution 263.44 15.07 3.97 3.97 Total: -1.00 -31.80 263.44 -5.63 -37.42 By element: Atomic # 1 Polarization: -1.61 SS G_CDS: -2.29 Total: -3.90 kcal Atomic # 6 Polarization: 12.83 SS G_CDS: -2.71 Total: 10.11 kcal Atomic # 7 Polarization: -43.82 SS G_CDS: 0.25 Total: -43.57 kcal Atomic # 8 Polarization: -20.72 SS G_CDS: 0.18 Total: -20.54 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -31.80 -5.63 -37.42 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050391746.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.621 kcal (2) G-P(sol) polarization free energy of solvation -31.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds