Wall clock time and date at job start Mon Mar 30 2020 03:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35494 * 126.97935 * 2 1 4 4 N 1.30526 * 107.30545 * 179.83284 * 3 2 1 5 5 N 1.28600 * 109.67197 * 0.43817 * 4 3 2 6 6 C 1.30517 * 109.67250 * 359.72320 * 5 4 3 7 7 C 1.50698 * 126.34522 * 180.02562 * 6 5 4 8 8 N 1.46501 * 109.47038 * 269.95533 * 7 6 5 9 9 S 1.65605 * 119.99761 * 165.00010 * 8 7 6 10 10 O 1.42098 * 106.39903 * 178.54155 * 9 8 7 11 11 O 1.42096 * 106.40233 * 311.45964 * 9 8 7 12 12 C 1.76199 * 107.21812 * 64.99991 * 9 8 7 13 13 H 1.07996 * 120.00259 * 0.02562 * 12 9 8 14 14 C 1.37880 * 119.99909 * 179.97438 * 12 9 8 15 15 N 1.31513 * 119.99860 * 179.97438 * 14 12 9 16 16 Si 1.86800 * 119.99883 * 0.02562 * 14 12 9 17 17 H 1.48506 * 109.46783 * 89.99996 * 16 14 12 18 18 H 1.48496 * 109.46771 * 209.99745 * 16 14 12 19 19 H 1.48503 * 109.47188 * 330.00032 * 16 14 12 20 20 H 1.09002 * 109.47391 * 269.68706 * 1 2 3 21 21 H 1.09001 * 109.46813 * 149.68762 * 1 2 3 22 22 H 1.09004 * 109.47041 * 29.68889 * 1 2 3 23 23 H 1.07996 * 126.34608 * 359.97438 * 3 2 1 24 24 H 1.08995 * 109.47086 * 29.95554 * 7 6 5 25 25 H 1.09004 * 109.47234 * 149.95544 * 7 6 5 26 26 H 0.96997 * 119.99911 * 344.99973 * 8 7 6 27 27 H 0.97003 * 119.99855 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2800 1.0824 0.0000 4 7 3.5091 0.6430 0.0036 5 7 3.5091 -0.6430 -0.0034 6 6 2.2801 -1.0824 -0.0059 7 6 1.8477 -2.5260 -0.0132 8 7 1.7069 -2.9865 -1.3968 9 16 1.6084 -4.6069 -1.7241 10 8 1.4455 -4.7228 -3.1309 11 8 2.6704 -5.2256 -1.0111 12 6 0.1137 -5.1954 -1.0000 13 1 -0.5322 -4.5144 -0.4657 14 6 -0.2318 -6.5251 -1.1163 15 7 -1.3471 -6.9644 -0.5753 16 14 0.8851 -7.7028 -2.0409 17 1 1.8668 -8.2970 -1.0982 18 1 0.0688 -8.7828 -2.6512 19 1 1.6075 -6.9650 -3.1081 20 1 -0.3634 -0.0056 1.0276 21 1 -0.3633 -0.8872 -0.5187 22 1 -0.3633 0.8928 -0.5090 23 1 1.9701 2.1169 -0.0004 24 1 2.5963 -3.1320 0.4970 25 1 0.8911 -2.6214 0.5006 26 1 1.6713 -2.3423 -2.1211 27 1 -1.5904 -7.8998 -0.6575 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050420133.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:47 Heat of formation + Delta-G solvation = 4.703825 kcal Electronic energy + Delta-G solvation = -15935.300579 eV Core-core repulsion = 13050.062103 eV Total energy + Delta-G solvation = -2885.238477 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 246.057 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.12500 -35.80980 -35.43770 -34.66533 -34.49736 -33.10701 -30.55493 -27.79242 -26.53206 -25.86780 -22.39075 -20.97848 -19.28481 -17.64921 -17.34971 -16.72671 -16.36728 -15.72663 -15.30644 -14.95150 -14.11719 -13.71339 -13.53292 -13.43187 -13.13597 -12.82648 -12.72113 -11.69605 -11.48466 -11.40375 -10.91498 -10.69423 -10.55577 -10.38894 -10.25988 -9.95323 -9.40209 -9.30941 -9.25689 -8.75849 -6.88245 -5.44050 1.58572 2.05502 2.41852 2.88959 3.04553 3.15272 3.24412 3.90994 4.22865 4.26072 4.46100 4.51576 4.54052 4.89146 5.00852 5.20785 5.26809 5.52487 5.68091 5.88408 6.01827 6.09035 6.33887 6.75866 7.38243 7.50643 8.08082 8.62271 8.72036 10.23525 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.043696 B = 0.006980 C = 0.006458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.643907 B = 4010.225897 C = 4334.459630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.471 5.471 3 C 0.145 3.855 4 N -0.300 5.300 5 N -0.278 5.278 6 C 0.174 3.826 7 C 0.214 3.786 8 N -1.121 6.121 9 S 2.676 3.324 10 O -1.003 7.003 11 O -1.004 7.004 12 C -1.017 5.017 13 H 0.121 0.879 14 C 0.154 3.846 15 N -0.822 5.822 16 Si 0.801 3.199 17 H -0.245 1.245 18 H -0.255 1.255 19 H -0.220 1.220 20 H 0.086 0.914 21 H 0.100 0.900 22 H 0.093 0.907 23 H 0.218 0.782 24 H 0.114 0.886 25 H 0.085 0.915 26 H 0.407 0.593 27 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.036 12.673 2.007 12.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.163 5.163 3 C -0.142 4.142 4 N -0.140 5.140 5 N -0.119 5.119 6 C -0.094 4.094 7 C 0.085 3.915 8 N -0.877 5.877 9 S 2.777 3.223 10 O -0.994 6.994 11 O -0.994 6.994 12 C -1.151 5.151 13 H 0.139 0.861 14 C -0.066 4.066 15 N -0.451 5.451 16 Si 0.621 3.379 17 H -0.168 1.168 18 H -0.179 1.179 19 H -0.142 1.142 20 H 0.104 0.896 21 H 0.119 0.881 22 H 0.111 0.889 23 H 0.235 0.765 24 H 0.131 0.869 25 H 0.103 0.897 26 H 0.238 0.762 27 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.979 11.927 1.741 12.093 hybrid contribution -1.933 -0.028 -0.243 1.949 sum -0.954 11.899 1.498 12.030 Atomic orbital electron populations 1.22244 0.74929 1.05909 1.04634 1.46265 1.09482 1.06701 1.53808 1.26435 0.87381 0.94902 1.05521 1.74279 1.18131 1.03456 1.18151 1.74332 1.17086 1.02935 1.17592 1.25020 0.87262 0.92403 1.04760 1.19412 1.02469 0.84752 0.84893 1.55632 1.92726 1.27543 1.11764 1.01451 0.76504 0.70488 0.73825 1.93488 1.88636 1.84244 1.32988 1.93425 1.58051 1.73273 1.74643 1.30403 1.28203 1.04476 1.52049 0.86090 1.24405 0.93938 0.97047 0.91186 1.69973 1.20817 1.17114 1.37154 0.87856 0.82596 0.84340 0.83074 1.16820 1.17875 1.14182 0.89563 0.88110 0.88867 0.76549 0.86852 0.89670 0.76177 0.90787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.47 10.89 59.85 0.65 1.12 15 2 N -0.47 -5.35 3.15 -122.69 -0.39 -5.74 15 3 C 0.15 1.63 12.74 -89.94 -1.15 0.48 15 4 N -0.30 -4.76 12.21 29.69 0.36 -4.40 15 5 N -0.28 -4.94 12.21 32.80 0.40 -4.54 15 6 C 0.17 2.65 7.43 -154.99 -1.15 1.50 15 7 C 0.21 3.43 6.39 -5.19 -0.03 3.39 15 8 N -1.12 -20.43 5.99 -11.66 -0.07 -20.50 15 9 S 2.68 63.99 4.24 -107.50 -0.46 63.53 15 10 O -1.00 -26.15 16.02 -57.17 -0.92 -27.06 15 11 O -1.00 -26.13 16.30 -57.17 -0.93 -27.06 15 12 C -1.02 -26.61 10.26 30.60 0.31 -26.29 15 13 H 0.12 3.08 8.06 -52.49 -0.42 2.66 15 14 C 0.15 4.25 5.47 -17.82 -0.10 4.15 15 15 N -0.82 -22.74 13.96 55.43 0.77 -21.96 15 16 Si 0.80 20.04 26.54 -169.99 -4.51 15.53 15 17 H -0.24 -5.99 7.11 56.52 0.40 -5.59 15 18 H -0.25 -5.85 7.11 56.52 0.40 -5.45 15 19 H -0.22 -5.62 5.61 56.52 0.32 -5.31 15 20 H 0.09 0.48 8.14 -51.93 -0.42 0.06 15 21 H 0.10 0.80 7.81 -51.93 -0.41 0.39 15 22 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 15 23 H 0.22 1.30 8.06 -52.49 -0.42 0.88 15 24 H 0.11 1.91 7.75 -51.93 -0.40 1.51 15 25 H 0.09 1.17 7.86 -51.93 -0.41 0.76 15 26 H 0.41 6.59 8.64 -34.48 -0.30 6.29 15 27 H 0.28 7.10 8.31 -40.82 -0.34 6.76 15 LS Contribution 256.39 15.07 3.86 3.86 Total: -1.00 -35.31 256.39 -5.76 -41.07 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: -2.42 Total: 2.93 kcal Atomic # 6 Polarization: -14.19 SS G_CDS: -1.46 Total: -15.65 kcal Atomic # 7 Polarization: -58.22 SS G_CDS: 1.08 Total: -57.14 kcal Atomic # 8 Polarization: -52.28 SS G_CDS: -1.85 Total: -54.13 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -4.51 Total: 15.53 kcal Atomic # 16 Polarization: 63.99 SS G_CDS: -0.46 Total: 63.53 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -35.31 -5.76 -41.07 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050420133.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.769 kcal (2) G-P(sol) polarization free energy of solvation -35.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds