Wall clock time and date at job start Mon Mar 30 2020 03:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35494 * 126.97935 * 2 1 4 4 N 1.30526 * 107.30545 * 179.83284 * 3 2 1 5 5 N 1.28600 * 109.67197 * 0.43817 * 4 3 2 6 6 C 1.30517 * 109.67250 * 359.72320 * 5 4 3 7 7 C 1.50698 * 126.34522 * 180.02562 * 6 5 4 8 8 N 1.46501 * 109.47038 * 269.95533 * 7 6 5 9 9 S 1.65605 * 119.99761 * 165.00010 * 8 7 6 10 10 O 1.42098 * 106.39903 * 178.54155 * 9 8 7 11 11 O 1.42096 * 106.40233 * 311.45964 * 9 8 7 12 12 C 1.76199 * 107.21812 * 64.99991 * 9 8 7 13 13 H 1.07996 * 120.00259 * 0.02562 * 12 9 8 14 14 C 1.37880 * 119.99909 * 179.97438 * 12 9 8 15 15 N 1.31513 * 119.99860 * 179.97438 * 14 12 9 16 16 Si 1.86800 * 119.99883 * 0.02562 * 14 12 9 17 17 H 1.48506 * 109.46783 * 89.99996 * 16 14 12 18 18 H 1.48496 * 109.46771 * 209.99745 * 16 14 12 19 19 H 1.48503 * 109.47188 * 330.00032 * 16 14 12 20 20 H 1.09002 * 109.47391 * 269.68706 * 1 2 3 21 21 H 1.09001 * 109.46813 * 149.68762 * 1 2 3 22 22 H 1.09004 * 109.47041 * 29.68889 * 1 2 3 23 23 H 1.07996 * 126.34608 * 359.97438 * 3 2 1 24 24 H 1.08995 * 109.47086 * 29.95554 * 7 6 5 25 25 H 1.09004 * 109.47234 * 149.95544 * 7 6 5 26 26 H 0.96997 * 119.99911 * 344.99973 * 8 7 6 27 27 H 0.97003 * 119.99855 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2800 1.0824 0.0000 4 7 3.5091 0.6430 0.0036 5 7 3.5091 -0.6430 -0.0034 6 6 2.2801 -1.0824 -0.0059 7 6 1.8477 -2.5260 -0.0132 8 7 1.7069 -2.9865 -1.3968 9 16 1.6084 -4.6069 -1.7241 10 8 1.4455 -4.7228 -3.1309 11 8 2.6704 -5.2256 -1.0111 12 6 0.1137 -5.1954 -1.0000 13 1 -0.5322 -4.5144 -0.4657 14 6 -0.2318 -6.5251 -1.1163 15 7 -1.3471 -6.9644 -0.5753 16 14 0.8851 -7.7028 -2.0409 17 1 1.8668 -8.2970 -1.0982 18 1 0.0688 -8.7828 -2.6512 19 1 1.6075 -6.9650 -3.1081 20 1 -0.3634 -0.0056 1.0276 21 1 -0.3633 -0.8872 -0.5187 22 1 -0.3633 0.8928 -0.5090 23 1 1.9701 2.1169 -0.0004 24 1 2.5963 -3.1320 0.4970 25 1 0.8911 -2.6214 0.5006 26 1 1.6713 -2.3423 -2.1211 27 1 -1.5904 -7.8998 -0.6575 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050420133.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:47 Heat of formation + Delta-G solvation = -23.682346 kcal Electronic energy + Delta-G solvation = -15936.531496 eV Core-core repulsion = 13050.062103 eV Total energy + Delta-G solvation = -2886.469393 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 246.057 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -44.14332 -37.74649 -36.73981 -36.51437 -35.74371 -35.16753 -31.73415 -28.57299 -28.51890 -27.14709 -23.34206 -22.07298 -21.15479 -19.52956 -18.75841 -18.20339 -17.46094 -17.25768 -16.71647 -16.20521 -15.82087 -15.37733 -15.05568 -14.86888 -14.31481 -14.21669 -13.64880 -13.44724 -13.29867 -12.92218 -12.72323 -12.57861 -12.56700 -11.86501 -11.45072 -11.32118 -11.23966 -11.12066 -10.46390 -10.37691 -8.95390 -7.51133 -0.00388 0.80528 1.08143 1.17093 1.24827 1.56923 1.80175 1.91519 2.43746 2.57852 3.10335 3.33068 3.69367 3.90462 4.03411 4.17085 4.29604 4.43087 4.63768 4.71303 4.78088 4.91043 5.09957 5.39263 5.91718 6.01478 6.08536 6.55719 7.67410 8.20942 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.043696 B = 0.006980 C = 0.006458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.643907 B = 4010.225897 C = 4334.459630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.463 5.463 3 C 0.173 3.827 4 N -0.349 5.349 5 N -0.322 5.322 6 C 0.162 3.838 7 C 0.210 3.790 8 N -1.106 6.106 9 S 2.698 3.302 10 O -1.026 7.026 11 O -1.028 7.028 12 C -1.029 5.029 13 H 0.121 0.879 14 C 0.115 3.885 15 N -0.847 5.847 16 Si 0.816 3.184 17 H -0.241 1.241 18 H -0.222 1.222 19 H -0.232 1.232 20 H 0.105 0.895 21 H 0.091 0.909 22 H 0.129 0.871 23 H 0.271 0.729 24 H 0.099 0.901 25 H 0.110 0.890 26 H 0.418 0.582 27 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.992 14.191 2.030 14.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.153 5.153 3 C -0.115 4.115 4 N -0.188 5.188 5 N -0.164 5.164 6 C -0.109 4.109 7 C 0.082 3.918 8 N -0.866 5.866 9 S 2.798 3.202 10 O -1.016 7.016 11 O -1.018 7.018 12 C -1.162 5.162 13 H 0.139 0.861 14 C -0.103 4.103 15 N -0.477 5.477 16 Si 0.634 3.366 17 H -0.164 1.164 18 H -0.144 1.144 19 H -0.154 1.154 20 H 0.123 0.877 21 H 0.110 0.890 22 H 0.147 0.853 23 H 0.287 0.713 24 H 0.118 0.882 25 H 0.128 0.872 26 H 0.252 0.748 27 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.014 13.432 1.763 13.548 hybrid contribution -1.687 -0.336 -0.205 1.733 sum -1.701 13.097 1.558 13.299 Atomic orbital electron populations 1.22639 0.72200 1.07328 1.06337 1.46464 1.10929 1.05507 1.52422 1.27397 0.85994 0.96579 1.01517 1.74182 1.20930 1.02839 1.20838 1.74226 1.18899 1.04299 1.18987 1.24626 0.87521 0.92631 1.06079 1.19504 1.03434 0.85575 0.83292 1.55072 1.92343 1.25769 1.13458 1.00575 0.75339 0.71503 0.72782 1.93450 1.88677 1.85413 1.34101 1.93394 1.58392 1.74946 1.75020 1.30800 1.29125 1.04530 1.51788 0.86108 1.25011 0.94878 0.98446 0.91948 1.69980 1.21552 1.18154 1.38061 0.87611 0.82246 0.84309 0.82419 1.16436 1.14397 1.15432 0.87695 0.89006 0.85264 0.71348 0.88247 0.87216 0.74775 0.89806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.58 10.89 127.77 1.39 1.97 15 2 N -0.46 -9.18 3.15 -542.07 -1.71 -10.89 15 3 C 0.17 3.32 12.74 180.11 2.30 5.61 15 4 N -0.35 -10.61 12.21 -59.99 -0.73 -11.35 15 5 N -0.32 -11.35 12.21 -50.16 -0.61 -11.97 15 6 C 0.16 4.73 7.43 137.98 1.02 5.75 15 7 C 0.21 6.58 6.39 85.63 0.55 7.13 15 8 N -1.11 -39.48 5.99 -190.79 -1.14 -40.62 15 9 S 2.70 128.04 4.24 -56.49 -0.24 127.80 15 10 O -1.03 -53.07 16.02 -128.00 -2.05 -55.12 15 11 O -1.03 -53.51 16.30 -128.00 -2.09 -55.59 15 12 C -1.03 -53.45 10.26 67.74 0.69 -52.76 15 13 H 0.12 6.10 8.06 -2.91 -0.02 6.08 15 14 C 0.11 6.26 5.47 84.66 0.46 6.72 15 15 N -0.85 -46.41 13.96 21.45 0.30 -46.11 15 16 Si 0.82 39.76 26.54 68.60 1.82 41.58 15 17 H -0.24 -11.50 7.11 99.48 0.71 -10.80 15 18 H -0.22 -9.55 7.11 99.48 0.71 -8.85 15 19 H -0.23 -11.72 5.61 99.48 0.56 -11.16 15 20 H 0.10 0.76 8.14 -2.39 -0.02 0.74 15 21 H 0.09 1.19 7.81 -2.39 -0.02 1.17 15 22 H 0.13 0.45 8.14 -2.38 -0.02 0.43 15 23 H 0.27 1.79 8.06 -2.91 -0.02 1.77 15 24 H 0.10 3.39 7.75 -2.39 -0.02 3.37 15 25 H 0.11 2.85 7.86 -2.39 -0.02 2.83 15 26 H 0.42 13.10 8.64 -96.74 -0.84 12.26 15 27 H 0.29 14.46 8.31 -92.71 -0.77 13.69 15 Total: -1.00 -76.47 256.39 0.19 -76.28 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: 0.22 Total: 11.55 kcal Atomic # 6 Polarization: -31.99 SS G_CDS: 6.42 Total: -25.57 kcal Atomic # 7 Polarization: -117.03 SS G_CDS: -3.90 Total: -120.93 kcal Atomic # 8 Polarization: -106.58 SS G_CDS: -4.14 Total: -110.72 kcal Atomic # 14 Polarization: 39.76 SS G_CDS: 1.82 Total: 41.58 kcal Atomic # 16 Polarization: 128.04 SS G_CDS: -0.24 Total: 127.80 kcal Total: -76.47 0.19 -76.28 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050420133.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.601 kcal (2) G-P(sol) polarization free energy of solvation -76.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds