Wall clock time and date at job start Mon Mar 30 2020 04:03:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 N 1.46502 * 109.46941 * 183.72010 * 3 2 1 5 5 C 1.36901 * 120.00094 * 269.38770 * 4 3 2 6 6 H 1.08004 * 120.00019 * 194.40163 * 5 4 3 7 7 C 1.39024 * 119.99752 * 14.40679 * 5 4 3 8 8 N 1.31381 * 120.00220 * 12.11704 * 7 5 4 9 9 Si 1.86802 * 119.99813 * 192.12026 * 7 5 4 10 10 H 1.48499 * 109.47230 * 89.99515 * 9 7 5 11 11 H 1.48500 * 109.47095 * 210.00058 * 9 7 5 12 12 H 1.48508 * 109.46845 * 329.99942 * 9 7 5 13 13 C 1.34779 * 119.99592 * 89.38833 * 4 3 2 14 14 O 1.21644 * 119.99620 * 184.92158 * 13 4 3 15 15 C 1.47318 * 120.00405 * 4.92785 * 13 4 3 16 16 C 1.40029 * 120.61171 * 303.69713 * 15 13 4 17 17 C 1.38325 * 118.36181 * 180.02562 * 16 15 13 18 18 C 1.38385 * 119.51305 * 0.25277 * 17 16 15 19 19 N 1.31859 * 121.23057 * 359.47188 * 18 17 16 20 20 C 1.32419 * 121.78180 * 0.54046 * 19 18 17 21 21 N 1.38268 * 119.83088 * 179.74872 * 20 19 18 22 22 H 1.08997 * 109.47054 * 63.71802 * 3 2 1 23 23 H 1.08995 * 109.46990 * 303.71680 * 3 2 1 24 24 H 0.96995 * 120.00039 * 179.97438 * 8 7 5 25 25 H 1.07995 * 120.82020 * 0.02562 * 16 15 13 26 26 H 1.07999 * 120.24434 * 179.97438 * 17 16 15 27 27 H 1.07998 * 119.38668 * 179.72910 * 18 17 16 28 28 H 0.97001 * 119.99903 * 184.94304 * 21 20 19 29 29 H 0.97005 * 120.00248 * 4.94956 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0957 1.3792 0.0896 5 6 3.3355 2.0960 -1.0518 6 1 3.9060 3.0119 -1.0045 7 6 2.8444 1.6452 -2.2718 8 7 1.9593 0.6748 -2.3055 9 14 3.4432 2.4189 -3.8631 10 1 4.6362 1.6829 -4.3532 11 1 2.3659 2.3506 -4.8828 12 1 3.8036 3.8386 -3.6181 13 6 3.3083 1.9417 1.2959 14 8 3.6268 3.1131 1.3730 15 6 3.1550 1.1378 2.5208 16 6 1.9517 0.4755 2.7932 17 6 1.8585 -0.2659 3.9572 18 6 2.9432 -0.3283 4.8144 19 7 4.0700 0.2983 4.5379 20 6 4.2139 1.0219 3.4383 21 7 5.4120 1.6663 3.1909 22 1 2.9715 -0.4542 -0.9214 23 1 2.9716 -0.5696 0.8548 24 1 1.6164 0.3605 -3.1567 25 1 1.1169 0.5420 2.1112 26 1 0.9445 -0.7887 4.1975 27 1 2.8667 -0.9042 5.7248 28 1 5.4971 2.2543 2.4241 29 1 6.1674 1.5304 3.7841 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050693868.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:48 Heat of formation + Delta-G solvation = 50.417377 kcal Electronic energy + Delta-G solvation = -17557.545230 eV Core-core repulsion = 14674.678185 eV Total energy + Delta-G solvation = -2882.867045 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.20431 -38.29569 -35.97902 -34.50782 -34.22900 -32.43740 -31.45242 -29.04449 -27.52603 -25.36885 -23.49559 -22.43595 -19.84487 -18.06325 -17.25283 -17.09147 -16.72448 -16.24432 -15.22057 -14.60742 -14.42103 -14.24536 -13.74124 -13.55983 -13.26049 -13.07572 -12.41329 -11.96501 -11.95154 -11.61964 -11.28418 -11.23407 -10.65573 -10.54413 -10.50155 -10.44311 -9.47962 -9.41608 -9.29009 -8.67596 -8.21573 -7.51481 -6.58222 -4.12066 1.37100 1.77746 3.03478 3.15658 3.19985 3.47309 3.66665 3.86182 3.97542 4.04855 4.21999 4.70379 4.83497 4.93999 5.15879 5.30406 5.45582 5.55130 5.73509 5.89152 6.11579 6.31406 6.55435 6.61615 6.84599 7.34398 7.56560 7.71060 7.78659 8.17061 8.49983 8.71172 8.86868 9.06928 9.60413 10.44378 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.029242 B = 0.008460 C = 0.006958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.306567 B = 3309.057700 C = 4023.048203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C 0.256 3.744 3 C 0.218 3.782 4 N -0.430 5.430 5 C -0.306 4.306 6 H 0.112 0.888 7 C 0.030 3.970 8 N -0.885 5.885 9 Si 0.938 3.062 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.268 1.268 13 C 0.496 3.504 14 O -0.575 6.575 15 C -0.221 4.221 16 C -0.016 4.016 17 C -0.240 4.240 18 C 0.153 3.847 19 N -0.552 5.552 20 C 0.437 3.563 21 N -0.837 5.837 22 H 0.137 0.863 23 H 0.080 0.920 24 H 0.276 0.724 25 H 0.132 0.868 26 H 0.130 0.870 27 H 0.153 0.847 28 H 0.418 0.582 29 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.654 -4.837 7.001 9.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.159 5.159 2 C -0.061 4.061 3 C 0.090 3.910 4 N -0.148 5.148 5 C -0.434 4.434 6 H 0.130 0.870 7 C -0.173 4.173 8 N -0.525 5.525 9 Si 0.764 3.236 10 H -0.200 1.200 11 H -0.209 1.209 12 H -0.193 1.193 13 C 0.285 3.715 14 O -0.459 6.459 15 C -0.232 4.232 16 C -0.043 4.043 17 C -0.263 4.263 18 C -0.005 4.005 19 N -0.271 5.271 20 C 0.198 3.802 21 N -0.381 5.381 22 H 0.155 0.845 23 H 0.098 0.902 24 H 0.087 0.913 25 H 0.150 0.850 26 H 0.148 0.852 27 H 0.171 0.829 28 H 0.252 0.748 29 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 3.739 -4.383 7.371 9.356 hybrid contribution -0.015 0.454 -1.596 1.659 sum 3.724 -3.929 5.775 7.916 Atomic orbital electron populations 1.80921 1.13403 1.08513 1.13086 1.29133 0.95270 0.92413 0.89315 1.18942 0.81777 0.85952 1.04279 1.43576 1.55586 1.10501 1.05141 1.19854 1.32232 1.08338 0.82936 0.87025 1.25361 0.94954 0.96867 1.00112 1.69703 1.26962 1.28255 1.27547 0.85723 0.78228 0.79606 0.80035 1.20022 1.20892 1.19250 1.17652 0.84792 0.86728 0.82348 1.90648 1.53305 1.15756 1.86172 1.20376 0.96067 1.07280 0.99453 1.21730 0.95964 0.90784 0.95810 1.21672 1.01154 1.06179 0.97328 1.22405 0.87236 0.93277 0.97626 1.67202 1.27047 1.14025 1.18808 1.18171 0.86182 0.87995 0.87897 1.42234 1.10718 1.51334 1.33767 0.84543 0.90231 0.91291 0.84983 0.85159 0.82936 0.74820 0.77205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -11.22 18.34 42.15 0.77 -10.45 15 2 C 0.26 5.67 10.67 -20.76 -0.22 5.45 15 3 C 0.22 4.46 4.75 -6.82 -0.03 4.42 15 4 N -0.43 -9.97 2.58 -119.19 -0.31 -10.28 15 5 C -0.31 -7.67 9.42 -15.00 -0.14 -7.81 15 6 H 0.11 2.90 7.32 -52.48 -0.38 2.51 15 7 C 0.03 0.72 5.15 -17.45 -0.09 0.63 15 8 N -0.88 -21.58 8.63 55.50 0.48 -21.10 15 9 Si 0.94 19.25 29.57 -169.99 -5.03 14.23 15 10 H -0.27 -5.46 7.11 56.52 0.40 -5.06 15 11 H -0.28 -5.91 7.11 56.52 0.40 -5.51 15 12 H -0.27 -5.58 7.11 56.52 0.40 -5.17 15 13 C 0.50 11.34 6.40 -12.57 -0.08 11.26 15 14 O -0.57 -14.68 15.60 5.24 0.08 -14.60 15 15 C -0.22 -4.30 4.65 -104.65 -0.49 -4.78 15 16 C -0.02 -0.29 7.92 -38.88 -0.31 -0.60 15 17 C -0.24 -3.48 10.09 -39.50 -0.40 -3.87 15 18 C 0.15 2.11 11.16 -17.49 -0.20 1.91 15 19 N -0.55 -8.86 10.38 -12.18 -0.13 -8.99 15 20 C 0.44 7.69 7.76 -155.16 -1.20 6.48 15 21 N -0.84 -12.94 8.96 31.28 0.28 -12.66 15 22 H 0.14 2.85 6.26 -51.93 -0.33 2.52 15 23 H 0.08 1.39 6.18 -51.93 -0.32 1.07 15 24 H 0.28 6.54 8.31 -40.82 -0.34 6.20 15 25 H 0.13 2.54 5.16 -52.49 -0.27 2.27 15 26 H 0.13 1.54 8.06 -52.49 -0.42 1.12 15 27 H 0.15 1.51 8.06 -52.49 -0.42 1.09 15 28 H 0.42 6.97 6.89 -40.82 -0.28 6.68 15 29 H 0.40 4.98 8.95 -40.82 -0.37 4.61 15 LS Contribution 258.55 15.07 3.90 3.90 Total: -1.00 -29.49 258.55 -5.04 -34.53 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -1.93 Total: 12.33 kcal Atomic # 6 Polarization: 16.25 SS G_CDS: -3.16 Total: 13.09 kcal Atomic # 7 Polarization: -64.58 SS G_CDS: 1.10 Total: -63.48 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: 0.08 Total: -14.60 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.03 Total: 14.23 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -29.49 -5.04 -34.53 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050693868.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.947 kcal (2) G-P(sol) polarization free energy of solvation -29.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds