Wall clock time and date at job start Mon Mar 30 2020 04:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 N 1.46502 * 109.46941 * 183.72010 * 3 2 1 5 5 C 1.36901 * 120.00094 * 269.38770 * 4 3 2 6 6 H 1.08004 * 120.00019 * 194.40163 * 5 4 3 7 7 C 1.39024 * 119.99752 * 14.40679 * 5 4 3 8 8 N 1.31381 * 120.00220 * 12.11704 * 7 5 4 9 9 Si 1.86802 * 119.99813 * 192.12026 * 7 5 4 10 10 H 1.48499 * 109.47230 * 89.99515 * 9 7 5 11 11 H 1.48500 * 109.47095 * 210.00058 * 9 7 5 12 12 H 1.48508 * 109.46845 * 329.99942 * 9 7 5 13 13 C 1.34779 * 119.99592 * 89.38833 * 4 3 2 14 14 O 1.21644 * 119.99620 * 184.92158 * 13 4 3 15 15 C 1.47318 * 120.00405 * 4.92785 * 13 4 3 16 16 C 1.40029 * 120.61171 * 303.69713 * 15 13 4 17 17 C 1.38325 * 118.36181 * 180.02562 * 16 15 13 18 18 C 1.38385 * 119.51305 * 0.25277 * 17 16 15 19 19 N 1.31859 * 121.23057 * 359.47188 * 18 17 16 20 20 C 1.32419 * 121.78180 * 0.54046 * 19 18 17 21 21 N 1.38268 * 119.83088 * 179.74872 * 20 19 18 22 22 H 1.08997 * 109.47054 * 63.71802 * 3 2 1 23 23 H 1.08995 * 109.46990 * 303.71680 * 3 2 1 24 24 H 0.96995 * 120.00039 * 179.97438 * 8 7 5 25 25 H 1.07995 * 120.82020 * 0.02562 * 16 15 13 26 26 H 1.07999 * 120.24434 * 179.97438 * 17 16 15 27 27 H 1.07998 * 119.38668 * 179.72910 * 18 17 16 28 28 H 0.97001 * 119.99903 * 184.94304 * 21 20 19 29 29 H 0.97005 * 120.00248 * 4.94956 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0957 1.3792 0.0896 5 6 3.3355 2.0960 -1.0518 6 1 3.9060 3.0119 -1.0045 7 6 2.8444 1.6452 -2.2718 8 7 1.9593 0.6748 -2.3055 9 14 3.4432 2.4189 -3.8631 10 1 4.6362 1.6829 -4.3532 11 1 2.3659 2.3506 -4.8828 12 1 3.8036 3.8386 -3.6181 13 6 3.3083 1.9417 1.2959 14 8 3.6268 3.1131 1.3730 15 6 3.1550 1.1378 2.5208 16 6 1.9517 0.4755 2.7932 17 6 1.8585 -0.2659 3.9572 18 6 2.9432 -0.3283 4.8144 19 7 4.0700 0.2983 4.5379 20 6 4.2139 1.0219 3.4383 21 7 5.4120 1.6663 3.1909 22 1 2.9715 -0.4542 -0.9214 23 1 2.9716 -0.5696 0.8548 24 1 1.6164 0.3605 -3.1567 25 1 1.1169 0.5420 2.1112 26 1 0.9445 -0.7887 4.1975 27 1 2.8667 -0.9042 5.7248 28 1 5.4971 2.2543 2.4241 29 1 6.1674 1.5304 3.7841 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050693868.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:47 Heat of formation + Delta-G solvation = 30.304775 kcal Electronic energy + Delta-G solvation = -17558.417378 eV Core-core repulsion = 14674.678185 eV Total energy + Delta-G solvation = -2883.739193 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.63247 -39.88018 -37.75262 -36.24447 -35.58700 -34.07026 -33.00325 -30.33550 -29.25627 -27.06601 -24.93741 -23.74825 -21.45024 -19.87694 -18.52201 -18.49217 -18.26740 -17.95428 -16.86589 -16.11471 -15.84766 -15.69901 -15.17936 -15.07203 -14.85393 -14.69140 -13.96474 -13.67544 -13.47013 -13.29438 -13.01010 -12.89286 -12.36749 -12.25946 -12.14040 -11.80288 -11.20406 -10.93337 -10.65484 -10.28035 -10.05614 -8.77481 -8.42447 -6.03531 0.06958 0.51587 1.38619 1.46219 1.56888 1.78146 1.95610 2.22658 2.32001 2.62358 2.91284 2.98038 3.10263 3.53013 3.73943 3.90701 4.05780 4.29531 4.45566 4.53817 4.69961 4.92883 5.03753 5.33391 5.42050 5.67442 5.93044 6.23806 6.34501 6.61750 6.95013 7.02078 7.22077 7.29921 7.81033 8.57789 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.029242 B = 0.008460 C = 0.006958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.306567 B = 3309.057700 C = 4023.048203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C 0.267 3.733 3 C 0.225 3.775 4 N -0.441 5.441 5 C -0.335 4.335 6 H 0.092 0.908 7 C 0.002 3.998 8 N -0.898 5.898 9 Si 0.997 3.003 10 H -0.259 1.259 11 H -0.285 1.285 12 H -0.275 1.275 13 C 0.497 3.503 14 O -0.613 6.613 15 C -0.253 4.253 16 C -0.024 4.024 17 C -0.231 4.231 18 C 0.169 3.831 19 N -0.555 5.555 20 C 0.431 3.569 21 N -0.831 5.831 22 H 0.134 0.866 23 H 0.112 0.888 24 H 0.277 0.723 25 H 0.113 0.887 26 H 0.163 0.837 27 H 0.203 0.797 28 H 0.412 0.588 29 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.908 -6.308 8.306 11.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.186 5.186 2 C -0.050 4.050 3 C 0.098 3.902 4 N -0.159 5.159 5 C -0.462 4.462 6 H 0.110 0.890 7 C -0.199 4.199 8 N -0.538 5.538 9 Si 0.821 3.179 10 H -0.184 1.184 11 H -0.210 1.210 12 H -0.200 1.200 13 C 0.287 3.713 14 O -0.499 6.499 15 C -0.264 4.264 16 C -0.051 4.051 17 C -0.253 4.253 18 C 0.010 3.990 19 N -0.273 5.273 20 C 0.192 3.808 21 N -0.374 5.374 22 H 0.151 0.849 23 H 0.129 0.871 24 H 0.088 0.912 25 H 0.131 0.869 26 H 0.180 0.820 27 H 0.219 0.781 28 H 0.244 0.756 29 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 4.014 -5.881 8.690 11.235 hybrid contribution -0.121 0.881 -1.866 2.068 sum 3.894 -4.999 6.824 9.312 Atomic orbital electron populations 1.80904 1.14189 1.09355 1.14175 1.29430 0.95560 0.91597 0.88402 1.19043 0.80732 0.84989 1.05443 1.43705 1.55815 1.11373 1.04959 1.19816 1.33402 1.08654 0.84339 0.89048 1.26011 0.94639 0.97119 1.02159 1.69790 1.27165 1.28755 1.28073 0.84853 0.78071 0.78473 0.76520 1.18388 1.21033 1.20041 1.18230 0.83186 0.86593 0.83292 1.90601 1.54732 1.17621 1.86987 1.20102 0.97930 1.09493 0.98873 1.21675 0.94743 0.91642 0.97026 1.22003 1.02703 1.04927 0.95693 1.23251 0.85792 0.91504 0.98436 1.67379 1.28138 1.14032 1.17792 1.18268 0.86210 0.88354 0.87992 1.42207 1.10871 1.50652 1.33665 0.84903 0.87080 0.91244 0.86894 0.81952 0.78081 0.75633 0.75599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -23.69 18.34 20.01 0.37 -23.33 15 2 C 0.27 11.82 10.67 89.44 0.95 12.77 15 3 C 0.22 9.18 4.75 84.58 0.40 9.58 15 4 N -0.44 -20.85 2.58 -649.24 -1.68 -22.53 15 5 C -0.33 -17.20 9.42 84.09 0.79 -16.41 15 6 H 0.09 4.97 7.32 -2.91 -0.02 4.94 15 7 C 0.00 0.09 5.15 84.95 0.44 0.53 15 8 N -0.90 -43.86 8.63 21.68 0.19 -43.68 15 9 Si 1.00 39.60 29.57 68.60 2.03 41.63 15 10 H -0.26 -9.62 7.11 99.48 0.71 -8.92 15 11 H -0.28 -11.32 7.11 99.48 0.71 -10.61 15 12 H -0.28 -11.20 7.11 99.48 0.71 -10.49 15 13 C 0.50 23.20 6.40 86.63 0.55 23.75 15 14 O -0.61 -32.44 15.60 -4.17 -0.07 -32.51 15 15 C -0.25 -9.71 4.65 -19.88 -0.09 -9.80 15 16 C -0.02 -0.82 7.92 22.73 0.18 -0.64 15 17 C -0.23 -5.84 10.09 22.33 0.23 -5.61 15 18 C 0.17 3.89 11.16 84.72 0.95 4.84 15 19 N -0.55 -16.06 10.38 -192.45 -2.00 -18.06 15 20 C 0.43 14.57 7.76 133.66 1.04 15.61 15 21 N -0.83 -25.18 8.96 -54.96 -0.49 -25.67 15 22 H 0.13 5.54 6.26 -2.39 -0.01 5.53 15 23 H 0.11 3.80 6.18 -2.39 -0.01 3.78 15 24 H 0.28 13.05 8.31 -92.71 -0.77 12.28 15 25 H 0.11 4.30 5.16 -2.91 -0.02 4.29 15 26 H 0.16 3.06 8.06 -2.91 -0.02 3.04 15 27 H 0.20 2.67 8.06 -2.91 -0.02 2.65 15 28 H 0.41 13.92 6.89 -92.71 -0.64 13.28 15 29 H 0.41 9.81 8.95 -92.70 -0.83 8.98 15 Total: -1.00 -64.32 258.55 3.56 -60.76 By element: Atomic # 1 Polarization: 28.99 SS G_CDS: -0.23 Total: 28.76 kcal Atomic # 6 Polarization: 29.18 SS G_CDS: 5.44 Total: 34.62 kcal Atomic # 7 Polarization: -129.65 SS G_CDS: -3.61 Total: -133.26 kcal Atomic # 8 Polarization: -32.44 SS G_CDS: -0.07 Total: -32.51 kcal Atomic # 14 Polarization: 39.60 SS G_CDS: 2.03 Total: 41.63 kcal Total: -64.32 3.56 -60.76 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050693868.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.066 kcal (2) G-P(sol) polarization free energy of solvation -64.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds