Wall clock time and date at job start Mon Mar 30 2020 04:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47179 * 348.45766 * 3 2 1 5 5 C 1.36797 * 120.00006 * 83.53716 * 4 3 2 6 6 H 1.07993 * 120.00318 * 168.27644 * 5 4 3 7 7 C 1.39110 * 119.99778 * 348.27074 * 5 4 3 8 8 N 1.31320 * 119.99945 * 2.68541 * 7 5 4 9 9 Si 1.86802 * 119.99736 * 182.68530 * 7 5 4 10 10 H 1.48495 * 109.47046 * 0.02562 * 9 7 5 11 11 H 1.48494 * 109.47071 * 120.00577 * 9 7 5 12 12 H 1.48502 * 109.46981 * 240.00082 * 9 7 5 13 13 C 1.34775 * 120.00128 * 263.53245 * 4 3 2 14 14 O 1.21557 * 120.00045 * 182.48321 * 13 4 3 15 15 C 1.48014 * 119.99805 * 2.47934 * 13 4 3 16 16 C 1.40100 * 120.88733 * 42.01175 * 15 13 4 17 17 C 1.37916 * 119.16286 * 180.02562 * 16 15 13 18 18 N 1.31940 * 121.01135 * 359.96995 * 17 16 15 19 19 C 1.32349 * 121.96293 * 0.02562 * 18 17 16 20 20 N 1.39023 * 119.64306 * 179.97438 * 19 18 17 21 21 C 1.39079 * 120.71556 * 0.02562 * 19 18 17 22 22 H 1.09008 * 109.47069 * 228.45655 * 3 2 1 23 23 H 1.08998 * 109.46929 * 108.46266 * 3 2 1 24 24 H 0.97003 * 120.00006 * 179.97438 * 8 7 5 25 25 H 1.07992 * 120.42321 * 359.97438 * 16 15 13 26 26 H 1.07999 * 119.49091 * 179.97438 * 17 16 15 27 27 H 0.97002 * 119.99886 * 0.02562 * 20 19 18 28 28 H 0.96998 * 120.00590 * 179.97438 * 20 19 18 29 29 H 1.08001 * 120.53967 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0970 -1.3524 0.2764 5 6 3.1996 -2.2633 -0.7391 6 1 3.7314 -3.1899 -0.5816 7 6 2.6190 -1.9959 -1.9746 8 7 2.0178 -0.8471 -2.1827 9 14 2.6944 -3.2712 -3.3375 10 1 3.4212 -4.4717 -2.8524 11 1 1.3155 -3.6543 -3.7337 12 1 3.4059 -2.7012 -4.5098 13 6 3.4457 -1.6998 1.5310 14 8 3.8939 -2.8078 1.7526 15 6 3.2830 -0.7320 2.6391 16 6 2.1356 0.0662 2.7342 17 6 2.0212 0.9565 3.7813 18 7 2.9728 1.0645 4.6888 19 6 4.0739 0.3317 4.6401 20 7 5.0461 0.4854 5.6218 21 6 4.2692 -0.5897 3.6168 22 1 2.9711 0.6824 0.7692 23 1 2.9712 0.3263 -0.9748 24 1 1.6132 -0.6605 -3.0444 25 1 1.3509 -0.0141 1.9966 26 1 1.1391 1.5747 3.8595 27 1 4.9154 1.1268 6.3377 28 1 5.8549 -0.0492 5.5914 29 1 5.1686 -1.1865 3.5800 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050693895.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:56 Heat of formation + Delta-G solvation = 59.922574 kcal Electronic energy + Delta-G solvation = -17302.035619 eV Core-core repulsion = 14419.580750 eV Total energy + Delta-G solvation = -2882.454869 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.17913 -38.49861 -35.99108 -34.56215 -34.35161 -32.37451 -31.48545 -28.98880 -27.52147 -25.60698 -23.40677 -22.66122 -19.87653 -18.11154 -17.52146 -16.93419 -16.35583 -15.85125 -15.71044 -14.71661 -14.44176 -14.24222 -13.88311 -13.72039 -13.24117 -13.17719 -12.68418 -12.01266 -11.63108 -11.47196 -11.28735 -11.22417 -10.76280 -10.54060 -10.43809 -10.35340 -9.49319 -9.39886 -9.32034 -8.69944 -8.28767 -7.66261 -6.54928 -4.14337 1.36901 1.62750 3.03439 3.15623 3.21469 3.53916 3.57949 3.70727 3.95697 4.04918 4.25748 4.59754 4.82390 4.98101 5.17798 5.38346 5.49009 5.54291 5.74283 6.02021 6.07610 6.17932 6.63552 6.78384 6.79343 7.32165 7.39026 7.56683 7.72119 8.15937 8.42362 8.71855 8.84859 9.03426 9.56746 10.39629 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.034267 B = 0.007272 C = 0.006270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.913045 B = 3849.351325 C = 4464.910358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C 0.259 3.741 3 C 0.208 3.792 4 N -0.428 5.428 5 C -0.298 4.298 6 H 0.115 0.885 7 C 0.029 3.971 8 N -0.887 5.887 9 Si 0.940 3.060 10 H -0.266 1.266 11 H -0.280 1.280 12 H -0.277 1.277 13 C 0.481 3.519 14 O -0.569 6.569 15 C -0.012 4.012 16 C -0.217 4.217 17 C 0.142 3.858 18 N -0.545 5.545 19 C 0.395 3.605 20 N -0.856 5.856 21 C -0.195 4.195 22 H 0.081 0.919 23 H 0.153 0.847 24 H 0.276 0.724 25 H 0.137 0.863 26 H 0.156 0.844 27 H 0.400 0.600 28 H 0.406 0.594 29 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.097 5.423 7.261 10.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.165 5.165 2 C -0.057 4.057 3 C 0.081 3.919 4 N -0.146 5.146 5 C -0.425 4.425 6 H 0.132 0.868 7 C -0.173 4.173 8 N -0.528 5.528 9 Si 0.767 3.233 10 H -0.190 1.190 11 H -0.205 1.205 12 H -0.203 1.203 13 C 0.270 3.730 14 O -0.453 6.453 15 C -0.024 4.024 16 C -0.241 4.241 17 C -0.014 4.014 18 N -0.264 5.264 19 C 0.158 3.842 20 N -0.401 5.401 21 C -0.221 4.221 22 H 0.098 0.902 23 H 0.170 0.830 24 H 0.087 0.913 25 H 0.154 0.846 26 H 0.173 0.827 27 H 0.229 0.771 28 H 0.236 0.764 29 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 3.434 5.502 7.780 10.129 hybrid contribution 0.591 -1.033 -1.250 1.726 sum 4.026 4.469 6.530 8.878 Atomic orbital electron populations 1.80947 1.13439 1.08813 1.13275 1.29086 0.95279 0.92208 0.89173 1.19439 0.81763 0.85317 1.05385 1.43551 1.54349 1.10403 1.06318 1.19985 1.32599 1.00556 0.89347 0.86751 1.25395 0.95170 0.97593 0.99100 1.69673 1.36123 1.21795 1.25247 0.85611 0.78263 0.80007 0.79466 1.18971 1.20538 1.20320 1.17887 0.85674 0.87386 0.82027 1.90645 1.49903 1.22067 1.82659 1.20346 0.93522 0.93509 0.94984 1.22408 0.99775 0.99728 1.02142 1.22227 0.95551 0.95085 0.88516 1.66995 1.02319 1.27435 1.29689 1.18202 0.87994 0.90143 0.87845 1.42103 1.21072 1.47652 1.29232 1.21347 1.01993 1.02475 0.96296 0.90158 0.83041 0.91291 0.84551 0.82723 0.77075 0.76393 0.84680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -11.31 18.48 42.15 0.78 -10.53 15 2 C 0.26 5.72 10.45 -20.76 -0.22 5.51 15 3 C 0.21 4.27 4.76 -6.83 -0.03 4.23 15 4 N -0.43 -10.07 2.60 -118.96 -0.31 -10.38 15 5 C -0.30 -7.54 9.47 -15.01 -0.14 -7.68 15 6 H 0.11 3.03 7.21 -52.49 -0.38 2.65 15 7 C 0.03 0.70 5.38 -17.45 -0.09 0.61 15 8 N -0.89 -21.26 8.05 55.50 0.45 -20.81 15 9 Si 0.94 19.58 29.55 -169.99 -5.02 14.55 15 10 H -0.27 -5.54 7.11 56.52 0.40 -5.14 15 11 H -0.28 -5.98 7.11 56.52 0.40 -5.58 15 12 H -0.28 -5.61 7.11 56.52 0.40 -5.21 15 13 C 0.48 11.22 7.30 -12.25 -0.09 11.14 15 14 O -0.57 -15.02 16.58 5.32 0.09 -14.93 15 15 C -0.01 -0.23 5.01 -104.68 -0.52 -0.76 15 16 C -0.22 -3.85 7.69 -39.00 -0.30 -4.15 15 17 C 0.14 2.21 11.16 -17.62 -0.20 2.01 15 18 N -0.55 -8.55 10.37 -12.49 -0.13 -8.67 15 19 C 0.39 5.91 7.74 -155.06 -1.20 4.71 15 20 N -0.86 -9.06 9.07 31.11 0.28 -8.78 15 21 C -0.20 -3.29 9.61 -38.76 -0.37 -3.66 15 22 H 0.08 1.41 5.65 -51.92 -0.29 1.12 15 23 H 0.15 3.20 6.05 -51.93 -0.31 2.88 15 24 H 0.28 6.42 8.31 -40.82 -0.34 6.08 15 25 H 0.14 2.59 4.22 -52.49 -0.22 2.37 15 26 H 0.16 1.95 8.06 -52.49 -0.42 1.53 15 27 H 0.40 3.60 8.95 -40.82 -0.37 3.23 15 28 H 0.41 3.34 8.82 -40.82 -0.36 2.98 15 29 H 0.14 2.15 8.06 -52.49 -0.42 1.72 15 LS Contribution 259.92 15.07 3.92 3.92 Total: -1.00 -30.01 259.92 -5.03 -35.05 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -1.91 Total: 8.64 kcal Atomic # 6 Polarization: 15.12 SS G_CDS: -3.17 Total: 11.95 kcal Atomic # 7 Polarization: -60.24 SS G_CDS: 1.07 Total: -59.17 kcal Atomic # 8 Polarization: -15.02 SS G_CDS: 0.09 Total: -14.93 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.02 Total: 14.55 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -30.01 -5.03 -35.05 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050693895.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.968 kcal (2) G-P(sol) polarization free energy of solvation -30.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds