Wall clock time and date at job start Mon Mar 30 2020 04:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47179 * 348.45766 * 3 2 1 5 5 C 1.36797 * 120.00006 * 83.53716 * 4 3 2 6 6 H 1.07993 * 120.00318 * 168.27644 * 5 4 3 7 7 C 1.39110 * 119.99778 * 348.27074 * 5 4 3 8 8 N 1.31320 * 119.99945 * 2.68541 * 7 5 4 9 9 Si 1.86802 * 119.99736 * 182.68530 * 7 5 4 10 10 H 1.48495 * 109.47046 * 0.02562 * 9 7 5 11 11 H 1.48494 * 109.47071 * 120.00577 * 9 7 5 12 12 H 1.48502 * 109.46981 * 240.00082 * 9 7 5 13 13 C 1.34775 * 120.00128 * 263.53245 * 4 3 2 14 14 O 1.21557 * 120.00045 * 182.48321 * 13 4 3 15 15 C 1.48014 * 119.99805 * 2.47934 * 13 4 3 16 16 C 1.40100 * 120.88733 * 42.01175 * 15 13 4 17 17 C 1.37916 * 119.16286 * 180.02562 * 16 15 13 18 18 N 1.31940 * 121.01135 * 359.96995 * 17 16 15 19 19 C 1.32349 * 121.96293 * 0.02562 * 18 17 16 20 20 N 1.39023 * 119.64306 * 179.97438 * 19 18 17 21 21 C 1.39079 * 120.71556 * 0.02562 * 19 18 17 22 22 H 1.09008 * 109.47069 * 228.45655 * 3 2 1 23 23 H 1.08998 * 109.46929 * 108.46266 * 3 2 1 24 24 H 0.97003 * 120.00006 * 179.97438 * 8 7 5 25 25 H 1.07992 * 120.42321 * 359.97438 * 16 15 13 26 26 H 1.07999 * 119.49091 * 179.97438 * 17 16 15 27 27 H 0.97002 * 119.99886 * 0.02562 * 20 19 18 28 28 H 0.96998 * 120.00590 * 179.97438 * 20 19 18 29 29 H 1.08001 * 120.53967 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0970 -1.3524 0.2764 5 6 3.1996 -2.2633 -0.7391 6 1 3.7314 -3.1899 -0.5816 7 6 2.6190 -1.9959 -1.9746 8 7 2.0178 -0.8471 -2.1827 9 14 2.6944 -3.2712 -3.3375 10 1 3.4212 -4.4717 -2.8524 11 1 1.3155 -3.6543 -3.7337 12 1 3.4059 -2.7012 -4.5098 13 6 3.4457 -1.6998 1.5310 14 8 3.8939 -2.8078 1.7526 15 6 3.2830 -0.7320 2.6391 16 6 2.1356 0.0662 2.7342 17 6 2.0212 0.9565 3.7813 18 7 2.9728 1.0645 4.6888 19 6 4.0739 0.3317 4.6401 20 7 5.0461 0.4854 5.6218 21 6 4.2692 -0.5897 3.6168 22 1 2.9711 0.6824 0.7692 23 1 2.9712 0.3263 -0.9748 24 1 1.6132 -0.6605 -3.0444 25 1 1.3509 -0.0141 1.9966 26 1 1.1391 1.5747 3.8595 27 1 4.9154 1.1268 6.3377 28 1 5.8549 -0.0492 5.5914 29 1 5.1686 -1.1865 3.5800 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050693895.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:56 Heat of formation + Delta-G solvation = 39.250131 kcal Electronic energy + Delta-G solvation = -17302.932043 eV Core-core repulsion = 14419.580750 eV Total energy + Delta-G solvation = -2883.351293 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.62403 -40.09148 -37.81763 -36.25394 -35.63722 -34.01576 -33.06020 -30.23844 -29.22848 -27.34441 -24.92317 -23.95042 -21.45640 -19.94623 -18.94186 -18.16760 -18.06119 -17.43427 -17.04508 -16.33250 -15.87466 -15.84883 -15.20752 -15.08577 -14.87892 -14.81519 -14.33674 -13.78689 -13.42594 -13.15996 -13.00475 -12.73050 -12.41806 -12.29060 -12.11736 -11.66646 -11.24847 -11.02596 -10.69102 -10.32290 -10.14686 -8.79948 -8.38854 -6.07288 -0.02912 0.35953 1.35900 1.43865 1.55917 1.82878 1.91295 2.22027 2.28921 2.61148 2.88316 2.97499 3.00878 3.54821 3.73275 3.88427 4.12204 4.18562 4.40056 4.53227 4.76758 4.84227 5.08238 5.28841 5.39098 5.56049 5.88552 6.30454 6.37425 6.59544 6.95222 6.98098 7.19771 7.32568 7.73910 8.52007 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.034267 B = 0.007272 C = 0.006270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.913045 B = 3849.351325 C = 4464.910358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C 0.271 3.729 3 C 0.214 3.786 4 N -0.437 5.437 5 C -0.331 4.331 6 H 0.092 0.908 7 C 0.004 3.996 8 N -0.893 5.893 9 Si 0.995 3.005 10 H -0.271 1.271 11 H -0.284 1.284 12 H -0.262 1.262 13 C 0.476 3.524 14 O -0.611 6.611 15 C -0.029 4.029 16 C -0.229 4.229 17 C 0.157 3.843 18 N -0.547 5.547 19 C 0.404 3.596 20 N -0.833 5.833 21 C -0.200 4.200 22 H 0.113 0.887 23 H 0.148 0.852 24 H 0.278 0.722 25 H 0.123 0.877 26 H 0.187 0.813 27 H 0.413 0.587 28 H 0.420 0.580 29 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.431 6.772 8.225 11.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.190 5.190 2 C -0.045 4.045 3 C 0.088 3.912 4 N -0.155 5.155 5 C -0.458 4.458 6 H 0.109 0.891 7 C -0.197 4.197 8 N -0.533 5.533 9 Si 0.819 3.181 10 H -0.195 1.195 11 H -0.210 1.210 12 H -0.186 1.186 13 C 0.267 3.733 14 O -0.498 6.498 15 C -0.040 4.040 16 C -0.253 4.253 17 C 0.001 3.999 18 N -0.266 5.266 19 C 0.165 3.835 20 N -0.378 5.378 21 C -0.226 4.226 22 H 0.131 0.869 23 H 0.165 0.835 24 H 0.089 0.911 25 H 0.140 0.860 26 H 0.204 0.796 27 H 0.244 0.756 28 H 0.252 0.748 29 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 3.801 6.892 8.772 11.785 hybrid contribution 0.534 -1.411 -1.422 2.073 sum 4.334 5.482 7.350 10.142 Atomic orbital electron populations 1.80936 1.14165 1.09603 1.14311 1.29322 0.95491 0.91430 0.88292 1.19529 0.80834 0.84508 1.06290 1.43672 1.54375 1.11171 1.06234 1.19892 1.34320 1.00887 0.90720 0.89053 1.26003 0.94386 0.99072 1.00196 1.69760 1.35650 1.22256 1.25636 0.84811 0.77795 0.77951 0.77522 1.19541 1.21024 1.18631 1.18546 0.84385 0.87626 0.82783 1.90595 1.51587 1.24106 1.83515 1.20068 0.95392 0.93976 0.94604 1.22248 0.99008 1.00843 1.03183 1.22647 0.96199 0.93996 0.87065 1.67167 1.02490 1.27445 1.29538 1.18317 0.88388 0.88985 0.87831 1.42091 1.20375 1.47343 1.28037 1.21403 1.01755 1.03162 0.96311 0.86917 0.83460 0.91081 0.85980 0.79609 0.75598 0.74817 0.84258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -23.66 18.48 20.01 0.37 -23.29 15 2 C 0.27 11.89 10.45 89.44 0.94 12.83 15 3 C 0.21 8.77 4.76 84.57 0.40 9.17 15 4 N -0.44 -20.95 2.60 -648.54 -1.68 -22.63 15 5 C -0.33 -17.22 9.47 84.13 0.80 -16.42 15 6 H 0.09 5.08 7.21 -2.91 -0.02 5.06 15 7 C 0.00 0.21 5.38 84.98 0.46 0.67 15 8 N -0.89 -42.53 8.05 21.69 0.17 -42.36 15 9 Si 1.00 40.17 29.55 68.60 2.03 42.19 15 10 H -0.27 -11.09 7.11 99.48 0.71 -10.38 15 11 H -0.28 -11.66 7.11 99.48 0.71 -10.95 15 12 H -0.26 -9.86 7.11 99.48 0.71 -9.15 15 13 C 0.48 22.70 7.30 86.84 0.63 23.33 15 14 O -0.61 -33.43 16.58 -3.89 -0.06 -33.50 15 15 C -0.03 -1.12 5.01 -19.90 -0.10 -1.22 15 16 C -0.23 -7.84 7.69 22.65 0.17 -7.67 15 17 C 0.16 4.44 11.16 84.60 0.94 5.39 15 18 N -0.55 -15.38 10.37 -193.43 -2.01 -17.38 15 19 C 0.40 10.93 7.74 133.06 1.03 11.96 15 20 N -0.83 -14.76 9.07 -55.48 -0.50 -15.27 15 21 C -0.20 -6.47 9.61 22.80 0.22 -6.25 15 22 H 0.11 3.85 5.65 -2.38 -0.01 3.84 15 23 H 0.15 6.19 6.05 -2.39 -0.01 6.17 15 24 H 0.28 12.75 8.31 -92.71 -0.77 11.98 15 25 H 0.12 4.56 4.22 -2.91 -0.01 4.55 15 26 H 0.19 4.02 8.06 -2.91 -0.02 4.00 15 27 H 0.41 5.81 8.95 -92.71 -0.83 4.98 15 28 H 0.42 5.51 8.82 -92.71 -0.82 4.70 15 29 H 0.14 4.30 8.06 -2.91 -0.02 4.27 15 Total: -1.00 -64.77 259.92 3.40 -61.36 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: -0.41 Total: 19.06 kcal Atomic # 6 Polarization: 26.31 SS G_CDS: 5.49 Total: 31.80 kcal Atomic # 7 Polarization: -117.28 SS G_CDS: -3.65 Total: -120.93 kcal Atomic # 8 Polarization: -33.43 SS G_CDS: -0.06 Total: -33.50 kcal Atomic # 14 Polarization: 40.17 SS G_CDS: 2.03 Total: 42.19 kcal Total: -64.77 3.40 -61.36 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050693895.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.615 kcal (2) G-P(sol) polarization free energy of solvation -64.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds