Wall clock time and date at job start Mon Mar 30 2020 03:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 119.99576 * 2 1 4 4 H 1.48504 * 109.46651 * 269.99378 * 3 2 1 5 5 H 1.48497 * 109.47504 * 29.99167 * 3 2 1 6 6 H 1.48500 * 109.46848 * 149.99879 * 3 2 1 7 7 C 1.37870 * 120.00227 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00325 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00191 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47470 * 179.97438 * 9 7 2 11 11 N 1.46495 * 109.47484 * 180.02562 * 10 9 7 12 12 C 1.34537 * 124.48098 * 269.95252 * 11 10 9 13 13 O 1.21434 * 125.70429 * 0.05577 * 12 11 10 14 14 C 1.47716 * 108.58962 * 180.02562 * 12 11 10 15 15 C 1.39007 * 134.54341 * 179.97438 * 14 12 11 16 16 C 1.38873 * 118.02877 * 180.02562 * 15 14 12 17 17 C 1.38475 * 119.40603 * 0.02562 * 16 15 14 18 18 N 1.31877 * 121.37145 * 0.02562 * 17 16 15 19 19 C 1.32014 * 121.56731 * 359.97438 * 18 17 16 20 20 C 1.34509 * 124.48313 * 89.97563 * 11 10 9 21 21 O 1.21400 * 125.70990 * 359.97438 * 20 11 10 22 22 H 0.97006 * 120.00735 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.46665 * 59.99769 * 9 7 2 24 24 H 1.08998 * 109.46831 * 299.99932 * 9 7 2 25 25 H 1.08998 * 109.46873 * 59.99680 * 10 9 7 26 26 H 1.09001 * 109.47164 * 300.00502 * 10 9 7 27 27 H 1.08003 * 120.98679 * 359.97438 * 15 14 12 28 28 H 1.07998 * 120.30172 * 179.97438 * 16 15 14 29 29 H 1.08001 * 119.31380 * 179.72494 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4464 2.6528 0.6998 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 7 1.5129 -4.9307 -0.0001 12 6 1.1325 -5.5912 1.1086 13 8 1.3379 -5.2350 2.2512 14 6 0.4227 -6.8216 0.7035 15 6 -0.1809 -7.8696 1.3889 16 6 -0.7665 -8.8850 0.6442 17 6 -0.7301 -8.8216 -0.7387 18 7 -0.1499 -7.8164 -1.3648 19 6 0.4207 -6.8269 -0.7031 20 6 1.1322 -5.5897 -1.1091 21 8 1.3374 -5.2327 -2.2512 22 1 -0.4851 0.8400 -0.0004 23 1 0.6248 -2.5570 -0.8897 24 1 0.6241 -2.5567 0.8903 25 1 2.8719 -3.6042 0.8905 26 1 2.8720 -3.6042 -0.8894 27 1 -0.1934 -7.8939 2.4686 28 1 -1.2452 -9.7170 1.1390 29 1 -1.1820 -9.6144 -1.3164 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054138754.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:19 Heat of formation + Delta-G solvation = -32.620514 kcal Electronic energy + Delta-G solvation = -16879.629154 eV Core-core repulsion = 13960.868565 eV Total energy + Delta-G solvation = -2918.760589 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.58042 -40.52265 -39.89148 -37.29040 -35.74707 -33.95908 -33.60134 -31.34452 -27.68562 -26.62063 -25.27954 -23.83598 -23.17243 -21.02534 -19.42594 -18.99040 -18.28697 -17.79593 -17.55265 -16.58959 -16.55368 -16.34277 -15.61147 -15.33217 -15.03314 -14.94098 -14.53226 -14.40115 -13.79165 -13.70682 -12.91982 -12.84074 -12.36313 -12.20477 -12.10198 -11.62624 -11.46650 -11.25695 -10.86293 -10.65534 -10.59431 -10.43279 -8.28619 -6.42432 -1.25813 -0.16120 0.76607 1.07399 1.39429 1.41687 1.52946 1.72473 2.15090 2.37455 2.55998 3.02608 3.05792 3.31839 3.61754 3.81474 4.01960 4.17387 4.22563 4.32398 4.35746 4.61788 4.76190 4.90137 5.20775 5.29033 5.38351 5.58346 5.66848 5.92926 6.01580 6.39232 6.57789 6.72208 7.27854 8.84434 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.041674 B = 0.005348 C = 0.005098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.720116 B = 5234.335617 C = 5491.334407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.976 3.024 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.257 1.257 7 C -0.546 4.546 8 H 0.074 0.926 9 C 0.020 3.980 10 C 0.126 3.874 11 N -0.574 5.574 12 C 0.573 3.427 13 O -0.484 6.484 14 C -0.199 4.199 15 C -0.001 4.001 16 C -0.115 4.115 17 C 0.124 3.876 18 N -0.458 5.458 19 C 0.077 3.923 20 C 0.574 3.426 21 O -0.480 6.480 22 H 0.266 0.734 23 H -0.011 1.011 24 H -0.007 1.007 25 H 0.099 0.901 26 H 0.094 0.906 27 H 0.182 0.818 28 H 0.213 0.787 29 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.815 -21.319 3.203 21.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.800 3.200 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.181 1.181 7 C -0.584 4.584 8 H 0.092 0.908 9 C -0.017 4.017 10 C 0.007 3.993 11 N -0.315 5.315 12 C 0.363 3.637 13 O -0.357 6.357 14 C -0.206 4.206 15 C -0.026 4.026 16 C -0.134 4.134 17 C -0.032 4.032 18 N -0.169 5.169 19 C -0.065 4.065 20 C 0.361 3.639 21 O -0.351 6.351 22 H 0.075 0.925 23 H 0.007 0.993 24 H 0.012 0.988 25 H 0.118 0.882 26 H 0.112 0.888 27 H 0.200 0.800 28 H 0.230 0.770 29 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -1.664 -20.725 2.281 20.917 hybrid contribution 0.227 1.452 0.609 1.591 sum -1.436 -19.273 2.890 19.541 Atomic orbital electron populations 1.70117 1.08132 1.28183 1.50821 1.26073 0.95832 1.03843 0.94098 0.85278 0.78668 0.77471 0.78615 1.19652 1.20639 1.18112 1.21456 0.94023 0.91086 1.51848 0.90756 1.19227 0.94481 0.93024 0.95015 1.21947 0.94569 0.78502 1.04265 1.46848 1.52817 1.23776 1.08078 1.18657 0.77365 0.83843 0.83848 1.90766 1.53531 1.71357 1.20000 1.21478 1.05153 0.98109 0.95819 1.21791 0.89052 0.88539 1.03190 1.23107 0.96500 0.99293 0.94521 1.24056 0.91565 0.93657 0.93901 1.66868 1.07031 1.00732 1.42298 1.21116 0.99241 0.94992 0.91197 1.18626 0.77633 0.83545 0.84050 1.90758 1.52755 1.70971 1.20604 0.92514 0.99280 0.98830 0.88246 0.88812 0.80042 0.77027 0.76487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.47 13.29 21.44 0.28 -58.19 15 2 C 0.00 -0.01 5.46 84.65 0.46 0.46 15 3 Si 0.98 44.94 29.54 68.60 2.03 46.96 15 4 H -0.27 -12.08 7.11 99.48 0.71 -11.37 15 5 H -0.28 -12.62 7.11 99.48 0.71 -11.92 15 6 H -0.26 -11.14 7.11 99.48 0.71 -10.43 15 7 C -0.55 -31.77 9.11 25.60 0.23 -31.54 15 8 H 0.07 4.02 7.74 -2.91 -0.02 3.99 15 9 C 0.02 1.14 5.30 29.85 0.16 1.30 15 10 C 0.13 5.65 5.68 86.38 0.49 6.14 15 11 N -0.57 -23.36 2.62 -762.50 -2.00 -25.36 15 12 C 0.57 20.96 8.02 86.79 0.70 21.66 15 13 O -0.48 -19.64 17.68 -3.51 -0.06 -19.70 15 14 C -0.20 -5.46 6.42 -20.00 -0.13 -5.59 15 15 C 0.00 -0.01 10.22 22.61 0.23 0.22 15 16 C -0.12 -0.92 10.12 22.48 0.23 -0.69 15 17 C 0.12 1.59 11.16 84.74 0.95 2.54 15 18 N -0.46 -11.85 10.38 -183.93 -1.91 -13.76 15 19 C 0.08 2.41 7.58 42.41 0.32 2.74 15 20 C 0.57 22.96 8.04 86.99 0.70 23.66 15 21 O -0.48 -22.04 17.68 -3.40 -0.06 -22.10 15 22 H 0.27 15.56 8.31 -92.70 -0.77 14.79 15 23 H -0.01 -0.70 8.14 -2.39 -0.02 -0.71 15 24 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 15 25 H 0.10 4.19 7.97 -2.39 -0.02 4.17 15 26 H 0.09 4.04 7.97 -2.39 -0.02 4.02 15 27 H 0.18 1.79 8.06 -2.91 -0.02 1.76 15 28 H 0.21 -0.62 8.06 -2.91 -0.02 -0.65 15 29 H 0.22 0.74 8.06 -2.91 -0.02 0.72 15 Total: -1.00 -81.10 272.04 3.80 -77.31 By element: Atomic # 1 Polarization: -7.23 SS G_CDS: 1.18 Total: -6.05 kcal Atomic # 6 Polarization: 16.55 SS G_CDS: 4.34 Total: 20.88 kcal Atomic # 7 Polarization: -93.68 SS G_CDS: -3.62 Total: -97.31 kcal Atomic # 8 Polarization: -41.67 SS G_CDS: -0.12 Total: -41.80 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.96 kcal Total: -81.10 3.80 -77.31 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054138754.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.687 kcal (2) G-P(sol) polarization free energy of solvation -81.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds