Wall clock time and date at job start Mon Mar 30 2020 03:49:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31379 * 1 3 3 Si 1.86808 * 119.99862 * 2 1 4 4 H 1.48504 * 109.47115 * 240.00187 * 3 2 1 5 5 H 1.48497 * 109.47088 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46765 * 120.00234 * 3 2 1 7 7 C 1.38896 * 120.00293 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00229 * 160.18023 * 7 2 1 9 9 N 1.37505 * 119.99805 * 340.18935 * 7 2 1 10 10 C 1.33791 * 124.18406 * 147.20833 * 9 7 2 11 11 O 1.21534 * 123.76716 * 0.03362 * 10 9 7 12 12 N 1.34523 * 112.46529 * 180.02562 * 10 9 7 13 13 C 1.47306 * 106.61707 * 0.02562 * 12 10 9 14 14 H 1.09004 * 110.60149 * 241.31782 * 13 12 10 15 15 C 1.50708 * 110.60194 * 118.52274 * 13 12 10 16 16 C 1.38236 * 119.99912 * 143.52975 * 15 13 12 17 17 C 1.38230 * 119.99670 * 179.97438 * 16 15 13 18 18 C 1.38234 * 120.00109 * 359.97438 * 17 16 15 19 19 C 1.38228 * 120.00058 * 359.97438 * 18 17 16 20 20 C 1.38226 * 119.99772 * 323.55276 * 15 13 12 21 21 C 1.35127 * 124.13772 * 327.14431 * 9 7 2 22 22 O 1.21234 * 127.33299 * 0.02562 * 21 9 7 23 23 H 0.97007 * 120.00278 * 359.97438 * 1 2 3 24 24 H 0.96996 * 126.69442 * 179.97438 * 12 10 9 25 25 H 1.07995 * 120.00040 * 0.02562 * 16 15 13 26 26 H 1.08006 * 119.99890 * 179.97438 * 17 16 15 27 27 H 1.07999 * 119.99619 * 179.71671 * 18 17 16 28 28 H 1.08007 * 120.00049 * 179.97438 * 19 18 17 29 29 H 1.07999 * 120.00361 * 359.97438 * 20 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2478 1.6178 0.0000 4 1 3.1015 1.6965 -1.2126 5 1 1.2828 2.7465 0.0006 6 1 3.1016 1.6964 1.2125 7 6 2.0083 -1.2028 -0.0005 8 1 3.0404 -1.2304 -0.3177 9 7 1.3819 -2.3586 0.4025 10 6 1.6454 -3.5707 -0.0990 11 8 2.4704 -3.7778 -0.9670 12 7 0.8953 -4.5345 0.4650 13 6 0.0336 -3.8707 1.4584 14 1 0.2376 -4.2520 2.4589 15 6 -1.4203 -4.0567 1.1080 16 6 -2.3559 -4.2319 2.1104 17 6 -3.6895 -4.4020 1.7890 18 6 -4.0876 -4.3965 0.4652 19 6 -3.1522 -4.2203 -0.5371 20 6 -1.8181 -4.0528 -0.2158 21 6 0.4249 -2.4098 1.3552 22 8 -0.0284 -1.4835 1.9925 23 1 -0.4851 0.8401 0.0004 24 1 0.9169 -5.4817 0.2574 25 1 -2.0450 -4.2349 3.1446 26 1 -4.4205 -4.5392 2.5722 27 1 -5.1289 -4.5340 0.2140 28 1 -3.4632 -4.2164 -1.5714 29 1 -1.0872 -3.9159 -0.9990 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057844995.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:53 Heat of formation + Delta-G solvation = -5.877570 kcal Electronic energy + Delta-G solvation = -17702.888498 eV Core-core repulsion = 14785.287570 eV Total energy + Delta-G solvation = -2917.600928 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.23042 -38.69027 -37.01212 -34.95528 -34.10508 -31.71434 -30.82843 -30.49315 -26.44299 -25.31385 -22.34856 -22.03189 -20.86528 -20.30547 -17.48998 -16.92113 -16.24064 -15.74845 -15.53503 -14.83359 -14.56067 -14.24479 -14.00163 -13.72331 -13.14476 -12.96793 -12.91439 -12.40295 -12.28903 -11.64552 -11.07136 -11.01791 -10.82709 -10.78245 -10.42144 -9.76351 -9.31245 -8.99864 -8.81478 -8.64480 -8.31635 -7.93949 -6.41067 -4.17514 1.53674 1.67784 2.95232 3.23340 3.27709 3.29504 3.57453 4.04786 4.14770 4.40347 4.59935 4.91324 5.08632 5.18685 5.20425 5.36156 5.43043 5.60174 5.75294 5.88637 6.15981 6.29886 6.58103 6.67003 6.74719 6.87132 7.23579 7.44589 7.61415 7.96482 8.19095 8.73222 9.02263 9.19547 9.78694 10.67928 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.026448 B = 0.008643 C = 0.007517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.418467 B = 3238.907999 C = 3723.979433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.058 3.942 3 Si 0.931 3.069 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.354 4.354 8 H 0.103 0.897 9 N -0.406 5.406 10 C 0.676 3.324 11 O -0.571 6.571 12 N -0.740 5.740 13 C 0.129 3.871 14 H 0.113 0.887 15 C -0.078 4.078 16 C -0.101 4.101 17 C -0.125 4.125 18 C -0.121 4.121 19 C -0.121 4.121 20 C -0.086 4.086 21 C 0.498 3.502 22 O -0.455 6.455 23 H 0.273 0.727 24 H 0.424 0.576 25 H 0.123 0.877 26 H 0.120 0.880 27 H 0.118 0.882 28 H 0.120 0.880 29 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.661 -8.425 3.386 11.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C -0.154 4.154 3 Si 0.756 3.244 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.195 1.195 7 C -0.479 4.479 8 H 0.121 0.879 9 N -0.139 5.139 10 C 0.380 3.620 11 O -0.448 6.448 12 N -0.405 5.405 13 C 0.019 3.981 14 H 0.130 0.870 15 C -0.079 4.079 16 C -0.119 4.119 17 C -0.143 4.143 18 C -0.140 4.140 19 C -0.139 4.139 20 C -0.105 4.105 21 C 0.284 3.716 22 O -0.325 6.325 23 H 0.083 0.917 24 H 0.266 0.734 25 H 0.141 0.859 26 H 0.138 0.862 27 H 0.136 0.864 28 H 0.138 0.862 29 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -6.588 -7.753 3.256 10.682 hybrid contribution 0.163 0.350 -0.158 0.417 sum -6.425 -7.402 3.097 10.280 Atomic orbital electron populations 1.69916 1.06419 1.28621 1.40643 1.25334 0.95192 1.00060 0.94830 0.85959 0.79101 0.80214 0.79099 1.19646 1.20783 1.19533 1.19306 0.96586 0.82175 1.49852 0.87920 1.41879 1.34721 1.06579 1.30679 1.16417 0.82187 0.82025 0.81381 1.90822 1.37386 1.83531 1.33096 1.45524 1.42017 1.09529 1.43416 1.20927 0.88316 0.94645 0.94211 0.86984 1.19617 0.93664 1.00618 0.94012 1.20932 0.92946 0.99286 0.98761 1.21020 0.95638 1.01344 0.96341 1.21099 0.99141 1.00608 0.93113 1.21085 0.93037 1.00512 0.99273 1.20999 0.96178 0.97249 0.96026 1.20094 0.82259 0.88124 0.81172 1.90606 1.55127 1.41589 1.45197 0.91662 0.73448 0.85887 0.86198 0.86423 0.86223 0.86032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.74 11.19 55.49 0.62 -23.12 15 2 C 0.06 1.59 4.83 -17.50 -0.08 1.51 15 3 Si 0.93 21.30 29.60 -169.99 -5.03 16.27 15 4 H -0.27 -6.03 7.11 56.52 0.40 -5.63 15 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 15 6 H -0.27 -6.11 7.11 56.52 0.40 -5.71 15 7 C -0.35 -10.03 9.47 -14.76 -0.14 -10.17 15 8 H 0.10 2.89 7.91 -52.48 -0.41 2.47 15 9 N -0.41 -10.74 2.70 -65.48 -0.18 -10.91 15 10 C 0.68 16.29 8.56 -88.02 -0.75 15.54 15 11 O -0.57 -15.26 17.62 5.34 0.09 -15.17 15 12 N -0.74 -13.59 5.42 -60.33 -0.33 -13.92 15 13 C 0.13 2.40 3.88 -69.36 -0.27 2.13 15 14 H 0.11 1.72 8.06 -51.93 -0.42 1.30 15 15 C -0.08 -1.35 5.07 -104.62 -0.53 -1.88 15 16 C -0.10 -1.51 9.69 -39.58 -0.38 -1.89 15 17 C -0.13 -1.68 10.05 -39.59 -0.40 -2.07 15 18 C -0.12 -1.63 10.05 -39.59 -0.40 -2.03 15 19 C -0.12 -1.83 10.05 -39.59 -0.40 -2.23 15 20 C -0.09 -1.53 9.34 -39.59 -0.37 -1.90 15 21 C 0.50 12.29 6.89 -10.39 -0.07 12.22 15 22 O -0.46 -12.56 15.43 5.60 0.09 -12.47 15 23 H 0.27 7.49 8.31 -40.82 -0.34 7.15 15 24 H 0.42 6.24 8.96 -40.82 -0.37 5.88 15 25 H 0.12 1.58 8.06 -52.49 -0.42 1.16 15 26 H 0.12 1.25 8.06 -52.48 -0.42 0.83 15 27 H 0.12 1.24 8.06 -52.49 -0.42 0.82 15 28 H 0.12 1.56 8.06 -52.48 -0.42 1.14 15 29 H 0.12 2.36 7.64 -52.49 -0.40 1.96 15 LS Contribution 264.25 15.07 3.98 3.98 Total: -1.00 -33.73 264.25 -6.97 -40.70 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -2.43 Total: 5.42 kcal Atomic # 6 Polarization: 13.01 SS G_CDS: -3.80 Total: 9.21 kcal Atomic # 7 Polarization: -48.07 SS G_CDS: 0.12 Total: -47.95 kcal Atomic # 8 Polarization: -27.82 SS G_CDS: 0.18 Total: -27.64 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.03 Total: 16.27 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -33.73 -6.97 -40.70 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057844995.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.823 kcal (2) G-P(sol) polarization free energy of solvation -33.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds