Wall clock time and date at job start Mon Mar 30 2020 03:49:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31379 * 1 3 3 Si 1.86808 * 119.99862 * 2 1 4 4 H 1.48504 * 109.47115 * 240.00187 * 3 2 1 5 5 H 1.48497 * 109.47088 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46765 * 120.00234 * 3 2 1 7 7 C 1.38896 * 120.00293 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00229 * 160.18023 * 7 2 1 9 9 N 1.37505 * 119.99805 * 340.18935 * 7 2 1 10 10 C 1.33791 * 124.18406 * 147.20833 * 9 7 2 11 11 O 1.21534 * 123.76716 * 0.03362 * 10 9 7 12 12 N 1.34523 * 112.46529 * 180.02562 * 10 9 7 13 13 C 1.47306 * 106.61707 * 0.02562 * 12 10 9 14 14 H 1.09004 * 110.60149 * 241.31782 * 13 12 10 15 15 C 1.50708 * 110.60194 * 118.52274 * 13 12 10 16 16 C 1.38236 * 119.99912 * 143.52975 * 15 13 12 17 17 C 1.38230 * 119.99670 * 179.97438 * 16 15 13 18 18 C 1.38234 * 120.00109 * 359.97438 * 17 16 15 19 19 C 1.38228 * 120.00058 * 359.97438 * 18 17 16 20 20 C 1.38226 * 119.99772 * 323.55276 * 15 13 12 21 21 C 1.35127 * 124.13772 * 327.14431 * 9 7 2 22 22 O 1.21234 * 127.33299 * 0.02562 * 21 9 7 23 23 H 0.97007 * 120.00278 * 359.97438 * 1 2 3 24 24 H 0.96996 * 126.69442 * 179.97438 * 12 10 9 25 25 H 1.07995 * 120.00040 * 0.02562 * 16 15 13 26 26 H 1.08006 * 119.99890 * 179.97438 * 17 16 15 27 27 H 1.07999 * 119.99619 * 179.71671 * 18 17 16 28 28 H 1.08007 * 120.00049 * 179.97438 * 19 18 17 29 29 H 1.07999 * 120.00361 * 359.97438 * 20 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2478 1.6178 0.0000 4 1 3.1015 1.6965 -1.2126 5 1 1.2828 2.7465 0.0006 6 1 3.1016 1.6964 1.2125 7 6 2.0083 -1.2028 -0.0005 8 1 3.0404 -1.2304 -0.3177 9 7 1.3819 -2.3586 0.4025 10 6 1.6454 -3.5707 -0.0990 11 8 2.4704 -3.7778 -0.9670 12 7 0.8953 -4.5345 0.4650 13 6 0.0336 -3.8707 1.4584 14 1 0.2376 -4.2520 2.4589 15 6 -1.4203 -4.0567 1.1080 16 6 -2.3559 -4.2319 2.1104 17 6 -3.6895 -4.4020 1.7890 18 6 -4.0876 -4.3965 0.4652 19 6 -3.1522 -4.2203 -0.5371 20 6 -1.8181 -4.0528 -0.2158 21 6 0.4249 -2.4098 1.3552 22 8 -0.0284 -1.4835 1.9925 23 1 -0.4851 0.8401 0.0004 24 1 0.9169 -5.4817 0.2574 25 1 -2.0450 -4.2349 3.1446 26 1 -4.4205 -4.5392 2.5722 27 1 -5.1289 -4.5340 0.2140 28 1 -3.4632 -4.2164 -1.5714 29 1 -1.0872 -3.9159 -0.9990 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057844995.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:52 Heat of formation + Delta-G solvation = -29.473256 kcal Electronic energy + Delta-G solvation = -17703.911684 eV Core-core repulsion = 14785.287570 eV Total energy + Delta-G solvation = -2918.624114 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.03420 -39.95612 -38.96897 -36.77201 -36.05937 -33.65920 -32.17248 -31.71121 -28.15655 -27.19102 -23.78015 -23.41892 -22.64687 -21.89689 -19.43034 -18.35490 -18.03812 -17.46554 -17.20020 -16.42967 -16.12930 -15.86852 -15.74737 -15.54207 -14.70247 -14.44698 -14.29888 -14.01210 -13.62360 -13.54931 -12.97226 -12.85636 -12.25718 -12.17807 -11.95020 -11.69889 -11.33001 -10.82878 -10.49647 -10.02251 -9.80203 -9.62051 -8.50082 -6.34386 0.32594 0.51752 1.08323 1.37274 1.44121 1.51178 1.90170 2.31882 2.44029 2.71037 2.94586 3.09907 3.48793 3.75597 3.91328 4.15141 4.26786 4.31172 4.63475 4.72097 4.77163 5.04963 5.15292 5.30310 5.54632 5.60943 5.63384 5.86655 6.00617 6.10654 6.30939 6.68161 7.14518 7.17358 7.80426 8.58978 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.026448 B = 0.008643 C = 0.007517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.418467 B = 3238.907999 C = 3723.979433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.014 3.986 3 Si 0.998 3.002 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.265 1.265 7 C -0.387 4.387 8 H 0.092 0.908 9 N -0.429 5.429 10 C 0.672 3.328 11 O -0.607 6.607 12 N -0.710 5.710 13 C 0.145 3.855 14 H 0.156 0.844 15 C -0.100 4.100 16 C -0.103 4.103 17 C -0.121 4.121 18 C -0.114 4.114 19 C -0.131 4.131 20 C -0.113 4.113 21 C 0.488 3.512 22 O -0.493 6.493 23 H 0.274 0.726 24 H 0.443 0.557 25 H 0.147 0.853 26 H 0.158 0.842 27 H 0.153 0.847 28 H 0.134 0.866 29 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.424 -9.202 4.671 13.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C -0.194 4.194 3 Si 0.819 3.181 4 H -0.185 1.185 5 H -0.199 1.199 6 H -0.190 1.190 7 C -0.513 4.513 8 H 0.109 0.891 9 N -0.162 5.162 10 C 0.375 3.625 11 O -0.488 6.488 12 N -0.375 5.375 13 C 0.036 3.964 14 H 0.173 0.827 15 C -0.102 4.102 16 C -0.121 4.121 17 C -0.138 4.138 18 C -0.132 4.132 19 C -0.149 4.149 20 C -0.132 4.132 21 C 0.277 3.723 22 O -0.365 6.365 23 H 0.083 0.917 24 H 0.289 0.711 25 H 0.165 0.835 26 H 0.176 0.824 27 H 0.171 0.829 28 H 0.152 0.848 29 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -8.372 -8.595 4.548 12.831 hybrid contribution 0.609 0.504 -0.557 0.967 sum -7.763 -8.091 3.992 11.902 Atomic orbital electron populations 1.70012 1.07843 1.29345 1.41666 1.26306 0.96033 1.03288 0.93802 0.84955 0.77951 0.75637 0.79515 1.18512 1.19851 1.18982 1.19495 0.96688 0.83799 1.51309 0.89058 1.42158 1.35417 1.06903 1.31706 1.16525 0.82297 0.82443 0.81266 1.90779 1.39146 1.84095 1.34741 1.45263 1.40353 1.09602 1.42274 1.20928 0.89296 0.90197 0.95945 0.82729 1.19557 0.92979 1.03066 0.94577 1.21265 0.93296 0.98308 0.99242 1.21504 0.95612 0.99344 0.97357 1.21549 1.00445 0.98427 0.92742 1.21332 0.92297 1.00393 1.00876 1.20935 0.97024 0.99567 0.95679 1.20979 0.80965 0.90530 0.79873 1.90556 1.55892 1.43708 1.46350 0.91688 0.71068 0.83546 0.82449 0.82900 0.84836 0.89172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -50.60 11.19 21.65 0.24 -50.36 15 2 C 0.01 0.79 4.83 84.92 0.41 1.20 15 3 Si 1.00 44.36 29.60 68.60 2.03 46.39 15 4 H -0.26 -11.03 7.11 99.48 0.71 -10.33 15 5 H -0.27 -11.65 7.11 99.48 0.71 -10.94 15 6 H -0.27 -11.46 7.11 99.48 0.71 -10.76 15 7 C -0.39 -22.78 9.47 83.96 0.79 -21.99 15 8 H 0.09 5.39 7.91 -2.91 -0.02 5.36 15 9 N -0.43 -23.39 2.70 -598.11 -1.62 -25.00 15 10 C 0.67 33.19 8.56 179.44 1.54 34.73 15 11 O -0.61 -33.57 17.62 -3.82 -0.07 -33.64 15 12 N -0.71 -25.81 5.42 -463.21 -2.51 -28.33 15 13 C 0.15 5.24 3.88 43.63 0.17 5.41 15 14 H 0.16 4.29 8.06 -2.38 -0.02 4.27 15 15 C -0.10 -3.36 5.07 -19.87 -0.10 -3.46 15 16 C -0.10 -2.74 9.69 22.27 0.22 -2.53 15 17 C -0.12 -2.70 10.05 22.27 0.22 -2.47 15 18 C -0.11 -2.62 10.05 22.27 0.22 -2.40 15 19 C -0.13 -3.75 10.05 22.27 0.22 -3.53 15 20 C -0.11 -4.00 9.34 22.27 0.21 -3.80 15 21 C 0.49 24.44 6.89 87.88 0.61 25.05 15 22 O -0.49 -27.64 15.43 -2.89 -0.04 -27.69 15 23 H 0.27 15.31 8.31 -92.70 -0.77 14.54 15 24 H 0.44 12.61 8.96 -92.71 -0.83 11.78 15 25 H 0.15 3.15 8.06 -2.91 -0.02 3.13 15 26 H 0.16 2.36 8.06 -2.91 -0.02 2.34 15 27 H 0.15 2.44 8.06 -2.91 -0.02 2.42 15 28 H 0.13 3.31 8.06 -2.91 -0.02 3.28 15 29 H 0.09 3.67 7.64 -2.91 -0.02 3.65 15 Total: -1.00 -76.56 264.25 2.90 -73.66 By element: Atomic # 1 Polarization: 18.39 SS G_CDS: 0.36 Total: 18.75 kcal Atomic # 6 Polarization: 21.71 SS G_CDS: 4.51 Total: 26.22 kcal Atomic # 7 Polarization: -99.80 SS G_CDS: -3.89 Total: -103.69 kcal Atomic # 8 Polarization: -61.21 SS G_CDS: -0.11 Total: -61.32 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -76.56 2.90 -73.66 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057844995.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.184 kcal (2) G-P(sol) polarization free energy of solvation -76.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds