Wall clock time and date at job start Mon Mar 30 2020 03:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31375 * 1 3 3 Si 1.86803 * 120.00220 * 2 1 4 4 H 1.48497 * 109.47542 * 275.46623 * 3 2 1 5 5 H 1.48504 * 109.46648 * 35.46607 * 3 2 1 6 6 H 1.48496 * 109.47086 * 155.46372 * 3 2 1 7 7 C 1.38896 * 120.00356 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99643 * 337.87314 * 7 2 1 9 9 N 1.37507 * 120.00715 * 157.59117 * 7 2 1 10 10 C 1.33794 * 124.18036 * 140.99139 * 9 7 2 11 11 O 1.21521 * 123.76736 * 359.97069 * 10 9 7 12 12 N 1.34525 * 112.45676 * 179.97438 * 10 9 7 13 13 C 1.47318 * 106.62187 * 359.97438 * 12 10 9 14 14 H 1.08993 * 110.59445 * 118.52630 * 13 12 10 15 15 C 1.50697 * 110.59973 * 241.47379 * 13 12 10 16 16 C 1.38236 * 119.99860 * 38.27160 * 15 13 12 17 17 C 1.38237 * 119.99541 * 179.76317 * 16 15 13 18 18 C 1.38230 * 120.00277 * 0.51243 * 17 16 15 19 19 C 1.38243 * 119.99944 * 359.74427 * 18 17 16 20 20 C 1.38230 * 120.00099 * 218.54719 * 15 13 12 21 21 C 1.34770 * 124.17515 * 320.69656 * 9 7 2 22 22 O 1.21235 * 127.15795 * 359.97438 * 21 9 7 23 23 H 0.97002 * 120.00061 * 359.97438 * 1 2 3 24 24 H 0.97005 * 126.68917 * 180.02562 * 12 10 9 25 25 H 1.07996 * 120.00073 * 359.97438 * 16 15 13 26 26 H 1.08002 * 120.00040 * 180.22861 * 17 16 15 27 27 H 1.08001 * 120.00403 * 179.71832 * 18 17 16 28 28 H 1.07997 * 120.00088 * 179.97438 * 19 18 17 29 29 H 1.08007 * 119.99719 * 0.02562 * 20 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2478 1.6177 0.0000 4 1 2.3799 2.1132 -1.3936 5 1 1.5077 2.6165 0.8124 6 1 3.5983 1.4095 0.5814 7 6 2.0083 -1.2028 -0.0005 8 1 1.5279 -2.1039 0.3514 9 7 3.3055 -1.2477 -0.4545 10 6 4.2727 -1.9836 0.1051 11 8 4.1050 -2.6922 1.0780 12 7 5.4514 -1.8513 -0.5296 13 6 5.2276 -0.9128 -1.6429 14 1 5.8486 -0.0247 -1.5264 15 6 5.5010 -1.5832 -2.9645 16 6 5.1341 -2.9016 -3.1597 17 6 5.3806 -3.5150 -4.3738 18 6 6.0033 -2.8133 -5.3890 19 6 6.3750 -1.4964 -5.1919 20 6 6.1238 -0.8815 -3.9797 21 6 3.7583 -0.5601 -1.5215 22 8 3.1230 0.1858 -2.2354 23 1 -0.4850 0.8401 0.0004 24 1 6.2859 -2.2891 -0.2995 25 1 4.6520 -3.4513 -2.3650 26 1 5.0906 -4.5439 -4.5277 27 1 6.2000 -3.2939 -6.3360 28 1 6.8619 -0.9483 -5.9849 29 1 6.4148 0.1471 -3.8254 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057844997.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:54 Heat of formation + Delta-G solvation = -1.070443 kcal Electronic energy + Delta-G solvation = -17678.298300 eV Core-core repulsion = 14760.905824 eV Total energy + Delta-G solvation = -2917.392475 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.68038 -38.94230 -37.54082 -35.29072 -34.36626 -32.10919 -31.09387 -30.75339 -26.76975 -25.45602 -22.60646 -22.37661 -21.01310 -20.39524 -17.93482 -17.08173 -16.77215 -16.21238 -15.60358 -15.06660 -14.71551 -14.56109 -14.44507 -13.57115 -13.37695 -13.30594 -13.06798 -12.86882 -12.60753 -12.41575 -11.29725 -11.25686 -11.02240 -10.72065 -10.28305 -9.90096 -9.50003 -9.06624 -8.97369 -8.87214 -8.60992 -8.39805 -6.51693 -4.32786 1.29189 1.44761 2.43844 3.21332 3.24072 3.30713 3.38203 3.79364 4.01903 4.08629 4.26018 4.62976 4.88345 4.96947 5.01916 5.06810 5.15857 5.32016 5.53022 5.65285 5.92857 6.07317 6.25518 6.45599 6.52861 6.60945 7.00306 7.26510 7.38844 7.71872 8.18350 8.41891 8.63669 9.04425 9.41036 10.55215 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.028413 B = 0.008802 C = 0.007891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.213167 B = 3180.298034 C = 3547.533695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.093 3.907 3 Si 0.878 3.122 4 H -0.246 1.246 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.351 4.351 8 H 0.116 0.884 9 N -0.418 5.418 10 C 0.679 3.321 11 O -0.551 6.551 12 N -0.737 5.737 13 C 0.132 3.868 14 H 0.118 0.882 15 C -0.084 4.084 16 C -0.093 4.093 17 C -0.120 4.120 18 C -0.118 4.118 19 C -0.123 4.123 20 C -0.098 4.098 21 C 0.474 3.526 22 O -0.474 6.474 23 H 0.280 0.720 24 H 0.428 0.572 25 H 0.123 0.877 26 H 0.123 0.877 27 H 0.121 0.879 28 H 0.123 0.877 29 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.865 -1.803 -8.846 16.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.118 4.118 3 Si 0.704 3.296 4 H -0.170 1.170 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.476 4.476 8 H 0.134 0.866 9 N -0.151 5.151 10 C 0.382 3.618 11 O -0.426 6.426 12 N -0.402 5.402 13 C 0.022 3.978 14 H 0.135 0.865 15 C -0.085 4.085 16 C -0.112 4.112 17 C -0.138 4.138 18 C -0.136 4.136 19 C -0.141 4.141 20 C -0.116 4.116 21 C 0.263 3.737 22 O -0.348 6.348 23 H 0.090 0.910 24 H 0.271 0.729 25 H 0.141 0.859 26 H 0.141 0.859 27 H 0.139 0.861 28 H 0.141 0.859 29 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 13.075 -1.675 -8.639 15.761 hybrid contribution 0.721 0.665 0.177 0.997 sum 13.796 -1.010 -8.462 16.216 Atomic orbital electron populations 1.69704 1.06414 1.28813 1.42514 1.25137 0.95147 0.98862 0.92690 0.86826 0.80067 0.83163 0.79547 1.17025 1.21290 1.19961 1.18929 0.82736 0.98168 1.47791 0.86618 1.42094 1.10540 1.38758 1.23720 1.16438 0.80670 0.82229 0.82422 1.90863 1.82576 1.42655 1.26521 1.45552 1.11931 1.50595 1.32160 1.20835 0.97576 0.93613 0.85790 0.86452 1.19565 0.99999 0.94641 0.94314 1.21040 0.98121 0.94364 0.97628 1.21121 0.99304 1.00138 0.93229 1.21167 0.98744 0.94800 0.98873 1.21076 1.00798 0.95165 0.97038 1.20980 0.98053 0.99650 0.92965 1.20529 0.88311 0.83567 0.81301 1.90676 1.63555 1.35129 1.45444 0.90955 0.72882 0.85886 0.85908 0.86133 0.85913 0.85643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.83 13.95 55.49 0.77 -24.05 15 2 C 0.09 2.69 5.13 -17.50 -0.09 2.60 15 3 Si 0.88 22.35 25.01 -169.99 -4.25 18.10 15 4 H -0.25 -6.31 6.31 56.52 0.36 -5.95 15 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 15 6 H -0.27 -6.83 7.11 56.52 0.40 -6.43 15 7 C -0.35 -10.20 9.82 -14.76 -0.15 -10.35 15 8 H 0.12 3.58 8.06 -52.48 -0.42 3.16 15 9 N -0.42 -10.60 2.30 -65.57 -0.15 -10.75 15 10 C 0.68 15.53 8.57 -88.02 -0.75 14.77 15 11 O -0.55 -14.16 17.62 5.35 0.09 -14.07 15 12 N -0.74 -12.50 5.49 -60.33 -0.33 -12.83 15 13 C 0.13 2.25 3.90 -69.35 -0.27 1.98 15 14 H 0.12 1.67 8.05 -51.93 -0.42 1.25 15 15 C -0.08 -1.27 5.06 -104.63 -0.53 -1.80 15 16 C -0.09 -1.40 9.32 -39.58 -0.37 -1.77 15 17 C -0.12 -1.52 10.05 -39.58 -0.40 -1.91 15 18 C -0.12 -1.32 10.05 -39.58 -0.40 -1.72 15 19 C -0.12 -1.39 10.05 -39.58 -0.40 -1.79 15 20 C -0.10 -1.27 9.69 -39.59 -0.38 -1.65 15 21 C 0.47 10.96 5.83 -10.55 -0.06 10.90 15 22 O -0.47 -12.16 13.90 5.60 0.08 -12.08 15 23 H 0.28 7.62 8.31 -40.82 -0.34 7.28 15 24 H 0.43 5.66 8.96 -40.82 -0.37 5.29 15 25 H 0.12 1.99 7.70 -52.49 -0.40 1.59 15 26 H 0.12 1.29 8.06 -52.49 -0.42 0.87 15 27 H 0.12 1.03 8.06 -52.49 -0.42 0.61 15 28 H 0.12 1.06 8.06 -52.49 -0.42 0.64 15 29 H 0.13 1.38 8.05 -52.48 -0.42 0.96 15 LS Contribution 259.56 15.07 3.91 3.91 Total: -1.00 -33.70 259.56 -6.15 -39.85 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: -2.48 Total: 2.66 kcal Atomic # 6 Polarization: 13.05 SS G_CDS: -3.80 Total: 9.26 kcal Atomic # 7 Polarization: -47.93 SS G_CDS: 0.29 Total: -47.64 kcal Atomic # 8 Polarization: -26.32 SS G_CDS: 0.17 Total: -26.14 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -4.25 Total: 18.10 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -33.70 -6.15 -39.85 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057844997.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.783 kcal (2) G-P(sol) polarization free energy of solvation -33.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds