Wall clock time and date at job start Mon Mar 30 2020 03:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31375 * 1 3 3 Si 1.86803 * 120.00220 * 2 1 4 4 H 1.48497 * 109.47542 * 275.46623 * 3 2 1 5 5 H 1.48504 * 109.46648 * 35.46607 * 3 2 1 6 6 H 1.48496 * 109.47086 * 155.46372 * 3 2 1 7 7 C 1.38896 * 120.00356 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99643 * 337.87314 * 7 2 1 9 9 N 1.37507 * 120.00715 * 157.59117 * 7 2 1 10 10 C 1.33794 * 124.18036 * 140.99139 * 9 7 2 11 11 O 1.21521 * 123.76736 * 359.97069 * 10 9 7 12 12 N 1.34525 * 112.45676 * 179.97438 * 10 9 7 13 13 C 1.47318 * 106.62187 * 359.97438 * 12 10 9 14 14 H 1.08993 * 110.59445 * 118.52630 * 13 12 10 15 15 C 1.50697 * 110.59973 * 241.47379 * 13 12 10 16 16 C 1.38236 * 119.99860 * 38.27160 * 15 13 12 17 17 C 1.38237 * 119.99541 * 179.76317 * 16 15 13 18 18 C 1.38230 * 120.00277 * 0.51243 * 17 16 15 19 19 C 1.38243 * 119.99944 * 359.74427 * 18 17 16 20 20 C 1.38230 * 120.00099 * 218.54719 * 15 13 12 21 21 C 1.34770 * 124.17515 * 320.69656 * 9 7 2 22 22 O 1.21235 * 127.15795 * 359.97438 * 21 9 7 23 23 H 0.97002 * 120.00061 * 359.97438 * 1 2 3 24 24 H 0.97005 * 126.68917 * 180.02562 * 12 10 9 25 25 H 1.07996 * 120.00073 * 359.97438 * 16 15 13 26 26 H 1.08002 * 120.00040 * 180.22861 * 17 16 15 27 27 H 1.08001 * 120.00403 * 179.71832 * 18 17 16 28 28 H 1.07997 * 120.00088 * 179.97438 * 19 18 17 29 29 H 1.08007 * 119.99719 * 0.02562 * 20 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2478 1.6177 0.0000 4 1 2.3799 2.1132 -1.3936 5 1 1.5077 2.6165 0.8124 6 1 3.5983 1.4095 0.5814 7 6 2.0083 -1.2028 -0.0005 8 1 1.5279 -2.1039 0.3514 9 7 3.3055 -1.2477 -0.4545 10 6 4.2727 -1.9836 0.1051 11 8 4.1050 -2.6922 1.0780 12 7 5.4514 -1.8513 -0.5296 13 6 5.2276 -0.9128 -1.6429 14 1 5.8486 -0.0247 -1.5264 15 6 5.5010 -1.5832 -2.9645 16 6 5.1341 -2.9016 -3.1597 17 6 5.3806 -3.5150 -4.3738 18 6 6.0033 -2.8133 -5.3890 19 6 6.3750 -1.4964 -5.1919 20 6 6.1238 -0.8815 -3.9797 21 6 3.7583 -0.5601 -1.5215 22 8 3.1230 0.1858 -2.2354 23 1 -0.4850 0.8401 0.0004 24 1 6.2859 -2.2891 -0.2995 25 1 4.6520 -3.4513 -2.3650 26 1 5.0906 -4.5439 -4.5277 27 1 6.2000 -3.2939 -6.3360 28 1 6.8619 -0.9483 -5.9849 29 1 6.4148 0.1471 -3.8254 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057844997.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:54 Heat of formation + Delta-G solvation = -25.709680 kcal Electronic energy + Delta-G solvation = -17679.366737 eV Core-core repulsion = 14760.905824 eV Total energy + Delta-G solvation = -2918.460913 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.41324 -40.03404 -39.40517 -37.03287 -36.24793 -34.13926 -32.27568 -31.76179 -28.39500 -27.29982 -24.06087 -23.48155 -22.57304 -21.99677 -19.86804 -18.55532 -18.28941 -17.99803 -16.93219 -16.75760 -16.32460 -16.00457 -15.94029 -15.42807 -15.07562 -14.80550 -14.47808 -14.31290 -14.08527 -13.67482 -13.27508 -12.83657 -12.30620 -12.23007 -11.97667 -11.78331 -11.41555 -10.87391 -10.67789 -10.48673 -9.83823 -9.71319 -8.71018 -6.56817 0.24543 0.48346 0.67095 1.18273 1.25287 1.33047 1.72408 2.06848 2.21046 2.37200 2.81784 2.86995 3.29034 3.54728 3.82369 4.10945 4.21581 4.29866 4.53921 4.60864 4.68741 4.99532 5.13293 5.20609 5.52060 5.55280 5.59605 5.64276 5.91437 6.06728 6.20547 6.36927 6.79988 6.88962 7.49325 8.40820 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.028413 B = 0.008802 C = 0.007891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.213167 B = 3180.298034 C = 3547.533695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.051 3.949 3 Si 0.933 3.067 4 H -0.247 1.247 5 H -0.271 1.271 6 H -0.263 1.263 7 C -0.370 4.370 8 H 0.074 0.926 9 N -0.440 5.440 10 C 0.678 3.322 11 O -0.590 6.590 12 N -0.704 5.704 13 C 0.148 3.852 14 H 0.162 0.838 15 C -0.106 4.106 16 C -0.117 4.117 17 C -0.128 4.128 18 C -0.110 4.110 19 C -0.119 4.119 20 C -0.098 4.098 21 C 0.470 3.530 22 O -0.503 6.503 23 H 0.287 0.713 24 H 0.450 0.550 25 H 0.098 0.902 26 H 0.138 0.862 27 H 0.153 0.847 28 H 0.157 0.843 29 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.015 -0.571 -11.049 20.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.158 4.158 3 Si 0.756 3.244 4 H -0.171 1.171 5 H -0.197 1.197 6 H -0.188 1.188 7 C -0.496 4.496 8 H 0.092 0.908 9 N -0.174 5.174 10 C 0.380 3.620 11 O -0.468 6.468 12 N -0.370 5.370 13 C 0.040 3.960 14 H 0.179 0.821 15 C -0.108 4.108 16 C -0.136 4.136 17 C -0.146 4.146 18 C -0.128 4.128 19 C -0.137 4.137 20 C -0.117 4.117 21 C 0.261 3.739 22 O -0.378 6.378 23 H 0.097 0.903 24 H 0.297 0.703 25 H 0.116 0.884 26 H 0.155 0.845 27 H 0.171 0.829 28 H 0.175 0.825 29 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 16.282 -0.456 -10.860 19.577 hybrid contribution -0.232 0.152 0.711 0.764 sum 16.050 -0.303 -10.148 18.991 Atomic orbital electron populations 1.69767 1.07728 1.30057 1.43972 1.25853 0.95850 1.01839 0.92211 0.85961 0.79479 0.79379 0.79589 1.17148 1.19705 1.18777 1.18644 0.84948 0.97168 1.48807 0.90803 1.42188 1.09949 1.40110 1.25120 1.16446 0.81747 0.81463 0.82316 1.90828 1.83441 1.44129 1.28406 1.45291 1.10753 1.49884 1.31061 1.20916 0.93272 0.95116 0.86723 0.82090 1.19458 1.02498 0.94828 0.93999 1.21024 0.99364 0.94851 0.98321 1.21368 0.99394 1.01130 0.92747 1.21604 0.96824 0.94904 0.99474 1.21527 0.99753 0.95267 0.97168 1.21295 0.97059 1.00612 0.92702 1.21479 0.90929 0.81740 0.79784 1.90640 1.65242 1.36073 1.45886 0.90262 0.70307 0.88370 0.84453 0.82912 0.82491 0.83330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -53.77 13.95 21.65 0.30 -53.47 15 2 C 0.05 3.00 5.13 84.92 0.44 3.44 15 3 Si 0.93 46.14 25.01 68.60 1.72 47.85 15 4 H -0.25 -12.19 6.31 99.48 0.63 -11.56 15 5 H -0.27 -12.59 7.11 99.48 0.71 -11.88 15 6 H -0.26 -12.40 7.11 99.48 0.71 -11.69 15 7 C -0.37 -22.48 9.82 83.96 0.82 -21.66 15 8 H 0.07 4.95 8.06 -2.91 -0.02 4.92 15 9 N -0.44 -22.71 2.30 -598.60 -1.38 -24.09 15 10 C 0.68 31.30 8.57 179.44 1.54 32.84 15 11 O -0.59 -31.25 17.62 -3.78 -0.07 -31.31 15 12 N -0.70 -22.75 5.49 -463.22 -2.54 -25.29 15 13 C 0.15 4.68 3.90 43.62 0.17 4.85 15 14 H 0.16 3.81 8.05 -2.39 -0.02 3.79 15 15 C -0.11 -2.96 5.06 -19.87 -0.10 -3.06 15 16 C -0.12 -3.39 9.32 22.27 0.21 -3.18 15 17 C -0.13 -2.95 10.05 22.27 0.22 -2.72 15 18 C -0.11 -2.01 10.05 22.27 0.22 -1.78 15 19 C -0.12 -2.11 10.05 22.27 0.22 -1.89 15 20 C -0.10 -2.12 9.69 22.27 0.22 -1.91 15 21 C 0.47 21.37 5.83 87.94 0.51 21.88 15 22 O -0.50 -25.43 13.90 -2.89 -0.04 -25.47 15 23 H 0.29 16.03 8.31 -92.71 -0.77 15.26 15 24 H 0.45 10.85 8.96 -92.70 -0.83 10.02 15 25 H 0.10 3.25 7.70 -2.91 -0.02 3.23 15 26 H 0.14 2.63 8.06 -2.91 -0.02 2.60 15 27 H 0.15 1.79 8.06 -2.91 -0.02 1.77 15 28 H 0.16 1.73 8.06 -2.91 -0.02 1.71 15 29 H 0.15 2.47 8.05 -2.91 -0.02 2.45 15 Total: -1.00 -77.10 259.56 2.74 -74.36 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: 0.28 Total: 10.62 kcal Atomic # 6 Polarization: 22.33 SS G_CDS: 4.47 Total: 26.80 kcal Atomic # 7 Polarization: -99.23 SS G_CDS: -3.62 Total: -102.85 kcal Atomic # 8 Polarization: -56.68 SS G_CDS: -0.11 Total: -56.78 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 1.72 Total: 47.85 kcal Total: -77.10 2.74 -74.36 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057844997.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.648 kcal (2) G-P(sol) polarization free energy of solvation -77.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds