Wall clock time and date at job start Mon Mar 30 2020 03:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86793 * 119.99962 * 2 1 4 4 H 1.48498 * 109.47141 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47416 * 300.00335 * 3 2 1 6 6 H 1.48497 * 109.47049 * 60.00119 * 3 2 1 7 7 C 1.37878 * 119.99977 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00190 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00037 * 359.97438 * 7 2 1 10 10 N 1.46504 * 109.47417 * 180.02562 * 9 7 2 11 11 N 1.39929 * 125.73875 * 270.16707 * 10 9 7 12 12 C 1.30428 * 108.91523 * 180.24470 * 11 10 9 13 13 C 1.41337 * 108.01460 * 359.76470 * 12 11 10 14 14 C 1.47293 * 126.42916 * 179.97438 * 13 12 11 15 15 O 1.21521 * 120.00302 * 180.02562 * 14 13 12 16 16 O 1.34750 * 119.99814 * 0.03301 * 14 13 12 17 17 C 1.34214 * 125.74612 * 89.99264 * 10 9 7 18 18 C 1.50706 * 126.29775 * 0.02968 * 17 10 9 19 19 F 1.39900 * 109.46958 * 299.71305 * 18 17 10 20 20 F 1.39898 * 109.46985 * 59.70967 * 18 17 10 21 21 H 0.96997 * 119.99992 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.47470 * 59.99922 * 9 7 2 23 23 H 1.09002 * 109.47029 * 299.99928 * 9 7 2 24 24 H 1.08008 * 125.99285 * 179.79763 * 12 11 10 25 25 H 0.96699 * 117.00226 * 179.97438 * 16 14 13 26 26 H 1.08995 * 109.47411 * 179.71056 * 18 17 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6127 -0.0005 11 7 2.7367 -4.2318 -1.1363 12 6 3.5430 -5.1849 -0.7589 13 6 3.5605 -5.2087 0.6542 14 6 4.3366 -6.1280 1.5040 15 8 4.2632 -6.0448 2.7142 16 8 5.1280 -7.0611 0.9396 17 6 2.7126 -4.2086 1.0888 18 6 2.4104 -3.8558 2.5224 19 9 2.7830 -2.5292 2.7647 20 9 1.0401 -4.0061 2.7607 21 1 -0.4850 0.8400 0.0004 22 1 0.6240 -2.5567 -0.8903 23 1 0.6248 -2.5571 0.8897 24 1 4.1003 -5.8407 -1.4116 25 1 5.6182 -7.6413 1.5380 26 1 2.9691 -4.5169 3.1849 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061630045.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:37 Heat of formation + Delta-G solvation = -123.595189 kcal Electronic energy + Delta-G solvation = -17979.018135 eV Core-core repulsion = 14502.083058 eV Total energy + Delta-G solvation = -3476.935077 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.060 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -48.57959 -46.55925 -41.11641 -39.51895 -35.97125 -33.98290 -32.03037 -31.11424 -27.77587 -26.14157 -23.83734 -22.89501 -20.84086 -19.74534 -17.88333 -17.39108 -17.02368 -16.73764 -16.64726 -15.99057 -15.48480 -14.87801 -14.27308 -13.95956 -13.72528 -13.38843 -13.20489 -12.91662 -12.40915 -12.24216 -11.87004 -11.52986 -11.51245 -11.15650 -10.95803 -10.40437 -10.38670 -10.18307 -10.02234 -9.19194 -8.72441 -8.41761 -6.35154 -4.43104 1.40935 2.38763 2.75685 3.18481 3.25898 3.30457 3.32716 3.34383 3.88874 4.24256 4.50909 4.94602 4.98033 5.07065 5.26331 5.33217 5.57468 5.99581 6.45592 6.54829 6.76152 6.89179 7.23931 7.59797 7.69509 7.93725 8.05951 8.59702 9.23618 10.73687 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.030259 B = 0.007670 C = 0.007131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.113546 B = 3649.788537 C = 3925.495655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.070 3.930 3 Si 0.912 3.088 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.279 1.279 7 C -0.538 4.538 8 H 0.068 0.932 9 C 0.241 3.759 10 N -0.275 5.275 11 N -0.279 5.279 12 C 0.083 3.917 13 C -0.283 4.283 14 C 0.569 3.431 15 O -0.539 6.539 16 O -0.510 6.510 17 C 0.083 3.917 18 C 0.329 3.671 19 F -0.178 7.178 20 F -0.194 7.194 21 H 0.270 0.730 22 H 0.065 0.935 23 H 0.064 0.936 24 H 0.195 0.805 25 H 0.411 0.589 26 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.688 -10.624 2.766 12.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.135 4.135 3 Si 0.738 3.262 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.576 4.576 8 H 0.086 0.914 9 C 0.125 3.875 10 N -0.050 5.050 11 N -0.100 5.100 12 C -0.102 4.102 13 C -0.298 4.298 14 C 0.416 3.584 15 O -0.431 6.431 16 O -0.321 6.321 17 C -0.058 4.058 18 C 0.274 3.726 19 F -0.159 7.159 20 F -0.176 7.176 21 H 0.079 0.921 22 H 0.083 0.917 23 H 0.082 0.918 24 H 0.212 0.788 25 H 0.268 0.732 26 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 5.597 -9.424 1.760 11.101 hybrid contribution 0.955 0.236 0.973 1.383 sum 6.552 -9.188 2.733 11.612 Atomic orbital electron populations 1.69922 1.06085 1.27910 1.48568 1.24901 0.95017 0.99565 0.93994 0.86211 0.80012 0.82084 0.77883 1.19447 1.20565 1.20451 1.21168 0.93750 0.88878 1.53814 0.91376 1.20244 0.85993 0.80115 1.01151 1.49682 1.30053 1.23972 1.01261 1.77339 1.13988 1.09961 1.08672 1.24043 0.97016 0.96331 0.92800 1.18751 1.11885 1.05340 0.93774 1.19669 0.75721 0.77612 0.85400 1.90770 1.65163 1.71328 1.15814 1.84557 1.56986 1.45486 1.45083 1.21947 0.97209 0.95069 0.91567 1.20444 0.78784 0.82548 0.90868 1.93111 1.90875 1.37109 1.94830 1.93013 1.33813 1.95661 1.95066 0.92059 0.91672 0.91790 0.78846 0.73160 0.82997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.85 13.29 55.43 0.74 -24.11 15 2 C 0.07 1.89 5.46 -17.82 -0.10 1.79 15 3 Si 0.91 21.12 29.54 -169.99 -5.02 16.10 15 4 H -0.27 -6.25 7.11 56.52 0.40 -5.85 15 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 15 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 15 7 C -0.54 -14.62 9.38 -34.44 -0.32 -14.94 15 8 H 0.07 1.90 7.81 -52.49 -0.41 1.49 15 9 C 0.24 6.08 5.94 -5.19 -0.03 6.05 15 10 N -0.27 -6.16 3.56 -57.76 -0.21 -6.36 15 11 N -0.28 -5.76 12.50 30.87 0.39 -5.38 15 12 C 0.08 1.39 11.87 -16.97 -0.20 1.19 15 13 C -0.28 -4.90 6.13 -105.08 -0.64 -5.54 15 14 C 0.57 8.38 8.33 34.41 0.29 8.67 15 15 O -0.54 -8.75 15.29 -19.28 -0.29 -9.04 15 16 O -0.51 -5.41 13.28 -40.63 -0.54 -5.95 15 17 C 0.08 1.65 6.44 -81.59 -0.53 1.13 15 18 C 0.33 6.22 5.20 36.01 0.19 6.41 15 19 F -0.18 -3.78 17.28 2.25 0.04 -3.74 15 20 F -0.19 -3.81 16.34 2.25 0.04 -3.77 15 21 H 0.27 7.08 8.31 -40.82 -0.34 6.75 15 22 H 0.07 1.71 8.14 -51.93 -0.42 1.29 15 23 H 0.06 1.67 6.90 -51.93 -0.36 1.31 15 24 H 0.19 2.37 8.06 -52.48 -0.42 1.95 15 25 H 0.41 2.26 9.11 45.56 0.42 2.68 15 26 H 0.15 2.51 5.55 -51.93 -0.29 2.22 15 LS Contribution 255.00 15.07 3.84 3.84 Total: -1.00 -30.78 255.00 -2.99 -33.77 By element: Atomic # 1 Polarization: 0.51 SS G_CDS: -0.62 Total: -0.11 kcal Atomic # 6 Polarization: 6.10 SS G_CDS: -1.35 Total: 4.75 kcal Atomic # 7 Polarization: -36.77 SS G_CDS: 0.92 Total: -35.85 kcal Atomic # 8 Polarization: -14.16 SS G_CDS: -0.83 Total: -14.99 kcal Atomic # 9 Polarization: -7.59 SS G_CDS: 0.08 Total: -7.51 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -30.78 -2.99 -33.77 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061630045.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.826 kcal (2) G-P(sol) polarization free energy of solvation -30.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds