Wall clock time and date at job start Mon Mar 30 2020 03:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86793 * 119.99962 * 2 1 4 4 H 1.48498 * 109.47141 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47416 * 300.00335 * 3 2 1 6 6 H 1.48497 * 109.47049 * 60.00119 * 3 2 1 7 7 C 1.37878 * 119.99977 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00190 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00037 * 359.97438 * 7 2 1 10 10 N 1.46504 * 109.47417 * 180.02562 * 9 7 2 11 11 N 1.39929 * 125.73875 * 270.16707 * 10 9 7 12 12 C 1.30428 * 108.91523 * 180.24470 * 11 10 9 13 13 C 1.41337 * 108.01460 * 359.76470 * 12 11 10 14 14 C 1.47293 * 126.42916 * 179.97438 * 13 12 11 15 15 O 1.21521 * 120.00302 * 180.02562 * 14 13 12 16 16 O 1.34750 * 119.99814 * 0.03301 * 14 13 12 17 17 C 1.34214 * 125.74612 * 89.99264 * 10 9 7 18 18 C 1.50706 * 126.29775 * 0.02968 * 17 10 9 19 19 F 1.39900 * 109.46958 * 299.71305 * 18 17 10 20 20 F 1.39898 * 109.46985 * 59.70967 * 18 17 10 21 21 H 0.96997 * 119.99992 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.47470 * 59.99922 * 9 7 2 23 23 H 1.09002 * 109.47029 * 299.99928 * 9 7 2 24 24 H 1.08008 * 125.99285 * 179.79763 * 12 11 10 25 25 H 0.96699 * 117.00226 * 179.97438 * 16 14 13 26 26 H 1.08995 * 109.47411 * 179.71056 * 18 17 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6127 -0.0005 11 7 2.7367 -4.2318 -1.1363 12 6 3.5430 -5.1849 -0.7589 13 6 3.5605 -5.2087 0.6542 14 6 4.3366 -6.1280 1.5040 15 8 4.2632 -6.0448 2.7142 16 8 5.1280 -7.0611 0.9396 17 6 2.7126 -4.2086 1.0888 18 6 2.4104 -3.8558 2.5224 19 9 2.7830 -2.5292 2.7647 20 9 1.0401 -4.0061 2.7607 21 1 -0.4850 0.8400 0.0004 22 1 0.6240 -2.5567 -0.8903 23 1 0.6248 -2.5571 0.8897 24 1 4.1003 -5.8407 -1.4116 25 1 5.6182 -7.6413 1.5380 26 1 2.9691 -4.5169 3.1849 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061630045.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:37 Heat of formation + Delta-G solvation = -145.227822 kcal Electronic energy + Delta-G solvation = -17979.956197 eV Core-core repulsion = 14502.083058 eV Total energy + Delta-G solvation = -3477.873138 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.060 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -50.14888 -48.15057 -42.57282 -40.67834 -37.00906 -35.88601 -33.82043 -32.61549 -29.55684 -27.70371 -25.61043 -24.32476 -22.22763 -21.25066 -19.17996 -18.88598 -18.74298 -18.38192 -18.19590 -17.38594 -16.73748 -16.66282 -15.88325 -15.54998 -15.14824 -14.98518 -14.52110 -14.43995 -14.28559 -13.90475 -13.64017 -13.08953 -12.94235 -12.77295 -12.52060 -12.37607 -11.91046 -11.85140 -11.52350 -10.81358 -10.78327 -9.96513 -8.41152 -6.57072 -0.00606 1.02636 1.22894 1.35980 1.37498 1.50850 2.06131 2.17427 2.29527 2.39886 2.92225 3.02220 3.50742 3.61953 3.79646 4.01269 4.18601 4.69948 4.75493 4.79957 5.38834 5.40708 5.59111 5.64880 5.67308 6.44561 6.52017 7.06937 7.13569 8.68069 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.030259 B = 0.007670 C = 0.007131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.113546 B = 3649.788537 C = 3925.495655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.024 3.976 3 Si 0.974 3.026 4 H -0.270 1.270 5 H -0.270 1.270 6 H -0.271 1.271 7 C -0.551 4.551 8 H 0.055 0.945 9 C 0.260 3.740 10 N -0.306 5.306 11 N -0.314 5.314 12 C 0.104 3.896 13 C -0.274 4.274 14 C 0.582 3.418 15 O -0.553 6.553 16 O -0.492 6.492 17 C 0.062 3.938 18 C 0.327 3.673 19 F -0.195 7.195 20 F -0.201 7.201 21 H 0.275 0.725 22 H 0.043 0.957 23 H 0.047 0.953 24 H 0.243 0.757 25 H 0.437 0.563 26 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.556 -11.714 2.760 14.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.178 4.178 3 Si 0.798 3.202 4 H -0.195 1.195 5 H -0.195 1.195 6 H -0.196 1.196 7 C -0.589 4.589 8 H 0.073 0.927 9 C 0.142 3.858 10 N -0.081 5.081 11 N -0.135 5.135 12 C -0.081 4.081 13 C -0.288 4.288 14 C 0.428 3.572 15 O -0.447 6.447 16 O -0.305 6.305 17 C -0.076 4.076 18 C 0.273 3.727 19 F -0.176 7.176 20 F -0.183 7.183 21 H 0.084 0.916 22 H 0.061 0.939 23 H 0.065 0.935 24 H 0.259 0.741 25 H 0.300 0.700 26 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 7.491 -10.559 1.765 13.066 hybrid contribution 0.472 0.376 0.967 1.140 sum 7.963 -10.182 2.732 13.212 Atomic orbital electron populations 1.70005 1.07368 1.29025 1.49084 1.25743 0.95843 1.02822 0.93383 0.85260 0.78546 0.78037 0.78396 1.19464 1.19490 1.19624 1.21305 0.93219 0.90271 1.54056 0.92662 1.19639 0.86182 0.80858 0.99128 1.49319 1.31487 1.24767 1.02534 1.77290 1.15708 1.11629 1.08826 1.24826 0.95188 0.94991 0.93140 1.19064 1.10705 1.04571 0.94480 1.19158 0.75753 0.77783 0.84518 1.90772 1.65690 1.71829 1.16389 1.84481 1.56056 1.44639 1.45314 1.22335 0.97999 0.95916 0.91387 1.20829 0.78622 0.82048 0.91228 1.93066 1.91002 1.38621 1.94936 1.92991 1.34573 1.95611 1.95100 0.91592 0.93889 0.93545 0.74126 0.70012 0.80255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.28 13.29 21.45 0.28 -51.99 15 2 C 0.02 1.29 5.46 84.65 0.46 1.76 15 3 Si 0.97 43.44 29.54 68.60 2.03 45.47 15 4 H -0.27 -11.94 7.11 99.48 0.71 -11.24 15 5 H -0.27 -11.52 7.11 99.48 0.71 -10.82 15 6 H -0.27 -11.68 7.11 99.48 0.71 -10.97 15 7 C -0.55 -30.71 9.38 25.60 0.24 -30.47 15 8 H 0.06 3.15 7.81 -2.91 -0.02 3.13 15 9 C 0.26 13.64 5.94 85.63 0.51 14.15 15 10 N -0.31 -13.93 3.56 -336.65 -1.20 -15.13 15 11 N -0.31 -12.85 12.50 -56.25 -0.70 -13.55 15 12 C 0.10 3.19 11.87 85.66 1.02 4.21 15 13 C -0.27 -8.87 6.13 -20.16 -0.12 -8.99 15 14 C 0.58 15.11 8.33 70.20 0.58 15.70 15 15 O -0.55 -16.33 15.29 19.77 0.30 -16.03 15 16 O -0.49 -8.05 13.28 -56.61 -0.75 -8.80 15 17 C 0.06 2.47 6.44 42.17 0.27 2.74 15 18 C 0.33 12.39 5.20 71.24 0.37 12.76 15 19 F -0.20 -8.41 17.28 44.97 0.78 -7.63 15 20 F -0.20 -8.03 16.34 44.97 0.73 -7.30 15 21 H 0.27 14.58 8.31 -92.71 -0.77 13.81 15 22 H 0.04 2.39 8.14 -2.39 -0.02 2.37 15 23 H 0.05 2.55 6.90 -2.39 -0.02 2.53 15 24 H 0.24 4.78 8.06 -2.91 -0.02 4.76 15 25 H 0.44 2.58 9.11 -74.06 -0.67 1.90 15 26 H 0.18 5.72 5.55 -2.39 -0.01 5.71 15 Total: -1.00 -67.31 255.00 5.38 -61.93 By element: Atomic # 1 Polarization: 0.60 SS G_CDS: 0.58 Total: 1.18 kcal Atomic # 6 Polarization: 8.53 SS G_CDS: 3.33 Total: 11.86 kcal Atomic # 7 Polarization: -79.05 SS G_CDS: -1.62 Total: -80.67 kcal Atomic # 8 Polarization: -24.38 SS G_CDS: -0.45 Total: -24.83 kcal Atomic # 9 Polarization: -16.44 SS G_CDS: 1.51 Total: -14.93 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -67.31 5.38 -61.93 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061630045.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.301 kcal (2) G-P(sol) polarization free energy of solvation -67.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds