Wall clock time and date at job start Mon Mar 30 2020 03:33:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 N 1.34184 * 125.96681 * 102.45125 * 3 2 1 5 5 N 1.28564 * 110.33093 * 179.74097 * 4 3 2 6 6 N 1.40171 * 109.15428 * 0.45380 * 5 4 3 7 7 C 1.37137 * 126.73918 * 179.81300 * 6 5 4 8 8 H 1.08002 * 120.00412 * 179.69361 * 7 6 5 9 9 C 1.39050 * 119.99675 * 359.41312 * 7 6 5 10 10 N 1.31244 * 120.00135 * 0.27590 * 9 7 6 11 11 Si 1.86803 * 119.99830 * 180.27738 * 9 7 6 12 12 H 1.48498 * 109.47174 * 90.00061 * 11 9 7 13 13 H 1.48501 * 109.47062 * 210.00012 * 11 9 7 14 14 H 1.48499 * 109.46981 * 330.00165 * 11 9 7 15 15 C 1.37477 * 106.52580 * 359.55351 * 6 5 4 16 16 C 1.46507 * 127.04286 * 180.29341 * 15 6 5 17 17 C 1.36642 * 125.35088 * 134.71333 * 16 15 6 18 18 C 1.37502 * 114.39486 * 179.86137 * 17 16 15 19 19 C 1.33919 * 115.22353 * 0.43595 * 18 17 16 20 20 S 1.75819 * 109.99972 * 359.76566 * 19 18 17 21 21 H 0.96996 * 120.00233 * 179.97438 * 10 9 7 22 22 H 1.08001 * 122.80192 * 0.02562 * 17 16 15 23 23 H 1.07998 * 122.38351 * 180.17607 * 18 17 16 24 24 H 1.08008 * 124.99778 * 179.73913 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 7 3.3559 0.2352 -1.0605 5 7 4.5940 0.1663 -0.7210 6 7 4.6802 -0.1416 0.6438 7 6 5.8276 -0.3037 1.3773 8 1 5.7671 -0.5365 2.4302 9 6 7.0688 -0.1741 0.7641 10 7 7.1424 0.1087 -0.5154 11 14 8.6317 -0.4026 1.7615 12 1 9.0391 -1.8301 1.7232 13 1 9.7133 0.4364 1.1859 14 1 8.3850 0.0042 3.1682 15 6 3.3888 -0.2433 1.1040 16 6 2.9607 -0.5451 2.4723 17 6 1.9796 0.1147 3.1573 18 6 1.7589 -0.3582 4.4295 19 6 2.5405 -1.3798 4.8022 20 16 3.6342 -1.8085 3.4941 21 1 8.0082 0.1995 -0.9431 22 1 1.4221 0.9371 2.7339 23 1 1.0116 0.0669 5.0831 24 1 2.5046 -1.8681 5.7649 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062295589.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:52 Heat of formation + Delta-G solvation = 146.509309 kcal Electronic energy + Delta-G solvation = -14538.573881 eV Core-core repulsion = 11966.793472 eV Total energy + Delta-G solvation = -2571.780410 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 246.027 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.44094 -37.10409 -35.72230 -34.61838 -32.21047 -30.63316 -27.74665 -26.29116 -24.04665 -22.11832 -21.40794 -19.42113 -18.45323 -16.92430 -16.49854 -15.63952 -15.13513 -14.53879 -14.35546 -13.20101 -12.83921 -12.61500 -12.56555 -12.43367 -12.18964 -12.04238 -11.92105 -11.60575 -11.52646 -10.84030 -10.49179 -10.35855 -10.25690 -9.80510 -9.24653 -8.56651 -8.09607 -7.45915 -7.29628 -5.06253 1.11692 1.87490 2.33274 2.55671 2.73323 2.77546 2.83501 3.03608 3.22763 3.36713 3.43819 3.96477 4.36415 4.48595 4.87572 5.35656 5.43830 5.81056 5.94591 6.16160 6.27199 6.42709 6.52926 6.69665 6.84556 7.04075 7.41671 7.93885 8.29575 8.53302 9.61317 9.64897 Molecular weight = 246.03amu Principal moments of inertia in cm(-1) A = 0.019955 B = 0.010530 C = 0.007174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.801885 B = 2658.348097 C = 3902.064037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C 0.329 3.671 3 C -0.001 4.001 4 N -0.264 5.264 5 N -0.084 5.084 6 N -0.118 5.118 7 C -0.269 4.269 8 H 0.135 0.865 9 C 0.043 3.957 10 N -0.727 5.727 11 Si 0.947 3.053 12 H -0.260 1.260 13 H -0.267 1.267 14 H -0.253 1.253 15 C -0.018 4.018 16 C -0.065 4.065 17 C -0.145 4.145 18 C -0.122 4.122 19 C -0.244 4.244 20 S 0.119 5.881 21 H 0.294 0.706 22 H 0.136 0.864 23 H 0.135 0.865 24 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.469 -2.320 9.685 10.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.139 5.139 2 C 0.014 3.986 3 C -0.154 4.154 4 N -0.124 5.124 5 N -0.060 5.060 6 N 0.117 4.883 7 C -0.410 4.410 8 H 0.152 0.848 9 C -0.182 4.182 10 N -0.350 5.350 11 Si 0.767 3.233 12 H -0.184 1.184 13 H -0.191 1.191 14 H -0.177 1.177 15 C -0.156 4.156 16 C -0.184 4.184 17 C -0.177 4.177 18 C -0.152 4.152 19 C -0.380 4.380 20 S 0.385 5.615 21 H 0.105 0.895 22 H 0.154 0.846 23 H 0.152 0.848 24 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 1.838 -3.061 7.862 8.635 hybrid contribution -0.387 0.768 1.490 1.720 sum 1.451 -2.293 9.352 9.738 Atomic orbital electron populations 1.81103 1.11374 1.12750 1.08696 1.24048 0.90650 0.91646 0.92267 1.16214 0.85994 1.22228 0.90984 1.74193 0.98986 1.14553 1.24622 1.82573 1.07445 1.28096 0.87895 1.46727 1.03514 1.29597 1.08469 1.20654 0.81091 1.44540 0.94755 0.84805 1.26011 1.01002 0.94759 0.96380 1.70103 1.28763 1.26692 1.09469 0.85582 0.77861 0.79879 0.79933 1.18442 1.19105 1.17659 1.18392 0.84716 1.20944 0.91576 1.21936 1.01747 0.99929 0.94830 1.20520 1.00659 1.02373 0.94158 1.19868 1.01188 0.97766 0.96426 1.25656 1.03782 1.05076 1.03522 1.84281 1.37702 1.33614 1.05931 0.89481 0.84636 0.84761 0.82422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -9.98 18.54 41.84 0.78 -9.20 14 2 C 0.33 7.28 15.24 -22.47 -0.34 6.94 14 3 C 0.00 -0.02 6.98 -84.36 -0.59 -0.61 14 4 N -0.26 -6.82 12.33 32.44 0.40 -6.42 14 5 N -0.08 -2.26 11.62 60.35 0.70 -1.56 14 6 N -0.12 -2.94 3.78 -7.82 -0.03 -2.97 14 7 C -0.27 -6.12 9.94 -14.88 -0.15 -6.27 14 8 H 0.13 2.75 6.46 -52.49 -0.34 2.41 14 9 C 0.04 0.92 5.50 -17.50 -0.10 0.83 14 10 N -0.73 -17.08 11.86 55.50 0.66 -16.43 14 11 Si 0.95 15.70 29.55 -169.99 -5.02 10.68 14 12 H -0.26 -4.22 7.11 56.52 0.40 -3.82 14 13 H -0.27 -4.35 7.11 56.52 0.40 -3.95 14 14 H -0.25 -4.04 7.11 56.52 0.40 -3.63 14 15 C -0.02 -0.40 6.87 -81.45 -0.56 -0.96 14 16 C -0.06 -1.27 5.86 -36.83 -0.22 -1.49 14 17 C -0.15 -2.56 9.69 -40.43 -0.39 -2.95 14 18 C -0.12 -1.79 10.14 -41.37 -0.42 -2.21 14 19 C -0.24 -3.42 11.22 29.21 0.33 -3.10 14 20 S 0.12 1.98 21.92 -107.50 -2.36 -0.38 14 21 H 0.29 6.13 8.31 -40.82 -0.34 5.79 14 22 H 0.14 2.36 8.06 -52.49 -0.42 1.94 14 23 H 0.13 1.59 8.06 -52.49 -0.42 1.17 14 24 H 0.16 1.71 8.06 -52.48 -0.42 1.29 14 LS Contribution 251.29 15.07 3.79 3.79 Total: -1.00 -26.85 251.29 -4.26 -31.11 By element: Atomic # 1 Polarization: 1.94 SS G_CDS: -0.74 Total: 1.20 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: -2.43 Total: -9.82 kcal Atomic # 7 Polarization: -39.08 SS G_CDS: 2.51 Total: -36.58 kcal Atomic # 14 Polarization: 15.70 SS G_CDS: -5.02 Total: 10.68 kcal Atomic # 16 Polarization: 1.98 SS G_CDS: -2.36 Total: -0.38 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -26.85 -4.26 -31.11 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062295589.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.620 kcal (2) G-P(sol) polarization free energy of solvation -26.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 150.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 146.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds