Wall clock time and date at job start Mon Mar 30 2020 03:33:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 N 1.34184 * 125.96681 * 102.45125 * 3 2 1 5 5 N 1.28564 * 110.33093 * 179.74097 * 4 3 2 6 6 N 1.40171 * 109.15428 * 0.45380 * 5 4 3 7 7 C 1.37137 * 126.73918 * 179.81300 * 6 5 4 8 8 H 1.08002 * 120.00412 * 179.69361 * 7 6 5 9 9 C 1.39050 * 119.99675 * 359.41312 * 7 6 5 10 10 N 1.31244 * 120.00135 * 0.27590 * 9 7 6 11 11 Si 1.86803 * 119.99830 * 180.27738 * 9 7 6 12 12 H 1.48498 * 109.47174 * 90.00061 * 11 9 7 13 13 H 1.48501 * 109.47062 * 210.00012 * 11 9 7 14 14 H 1.48499 * 109.46981 * 330.00165 * 11 9 7 15 15 C 1.37477 * 106.52580 * 359.55351 * 6 5 4 16 16 C 1.46507 * 127.04286 * 180.29341 * 15 6 5 17 17 C 1.36642 * 125.35088 * 134.71333 * 16 15 6 18 18 C 1.37502 * 114.39486 * 179.86137 * 17 16 15 19 19 C 1.33919 * 115.22353 * 0.43595 * 18 17 16 20 20 S 1.75819 * 109.99972 * 359.76566 * 19 18 17 21 21 H 0.96996 * 120.00233 * 179.97438 * 10 9 7 22 22 H 1.08001 * 122.80192 * 0.02562 * 17 16 15 23 23 H 1.07998 * 122.38351 * 180.17607 * 18 17 16 24 24 H 1.08008 * 124.99778 * 179.73913 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 7 3.3559 0.2352 -1.0605 5 7 4.5940 0.1663 -0.7210 6 7 4.6802 -0.1416 0.6438 7 6 5.8276 -0.3037 1.3773 8 1 5.7671 -0.5365 2.4302 9 6 7.0688 -0.1741 0.7641 10 7 7.1424 0.1087 -0.5154 11 14 8.6317 -0.4026 1.7615 12 1 9.0391 -1.8301 1.7232 13 1 9.7133 0.4364 1.1859 14 1 8.3850 0.0042 3.1682 15 6 3.3888 -0.2433 1.1040 16 6 2.9607 -0.5451 2.4723 17 6 1.9796 0.1147 3.1573 18 6 1.7589 -0.3582 4.4295 19 6 2.5405 -1.3798 4.8022 20 16 3.6342 -1.8085 3.4941 21 1 8.0082 0.1995 -0.9431 22 1 1.4221 0.9371 2.7339 23 1 1.0116 0.0669 5.0831 24 1 2.5046 -1.8681 5.7649 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062295589.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:51 Heat of formation + Delta-G solvation = 130.574733 kcal Electronic energy + Delta-G solvation = -14539.264856 eV Core-core repulsion = 11966.793472 eV Total energy + Delta-G solvation = -2572.471385 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 246.027 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.24161 -38.40742 -37.49571 -36.33846 -33.92540 -32.26537 -29.29078 -28.00612 -25.44803 -23.91600 -23.02755 -21.02789 -19.82482 -18.49407 -18.19506 -17.20581 -16.50962 -16.25485 -15.83725 -14.67122 -14.50404 -14.35933 -14.15651 -13.82998 -13.62809 -13.49770 -13.45152 -13.07534 -13.00374 -12.11370 -12.08897 -11.98046 -11.78821 -11.52584 -10.90219 -10.10916 -9.38143 -9.08648 -8.92302 -6.83128 -0.26444 0.47373 0.96215 1.07839 1.20354 1.34616 1.57703 1.60046 1.61850 1.85115 1.98632 2.33331 2.61702 2.77427 3.06530 3.93974 4.28867 4.38945 4.49005 4.63298 4.74536 4.83393 5.18795 5.21912 5.46254 5.60320 5.72156 6.24853 6.49178 6.80587 7.76335 8.05296 Molecular weight = 246.03amu Principal moments of inertia in cm(-1) A = 0.019955 B = 0.010530 C = 0.007174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.801885 B = 2658.348097 C = 3902.064037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C 0.334 3.666 3 C -0.011 4.011 4 N -0.292 5.292 5 N -0.128 5.128 6 N -0.130 5.130 7 C -0.289 4.289 8 H 0.153 0.847 9 C 0.003 3.997 10 N -0.772 5.772 11 Si 1.020 2.980 12 H -0.252 1.252 13 H -0.263 1.263 14 H -0.238 1.238 15 C -0.017 4.017 16 C -0.119 4.119 17 C -0.131 4.131 18 C -0.134 4.134 19 C -0.208 4.208 20 S 0.120 5.880 21 H 0.301 0.699 22 H 0.130 0.870 23 H 0.170 0.830 24 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.615 -3.061 13.059 13.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.131 5.131 2 C 0.019 3.981 3 C -0.164 4.164 4 N -0.151 5.151 5 N -0.103 5.103 6 N 0.105 4.895 7 C -0.431 4.431 8 H 0.170 0.830 9 C -0.216 4.216 10 N -0.396 5.396 11 Si 0.835 3.165 12 H -0.176 1.176 13 H -0.187 1.187 14 H -0.160 1.160 15 C -0.155 4.155 16 C -0.238 4.238 17 C -0.164 4.164 18 C -0.163 4.163 19 C -0.344 4.344 20 S 0.385 5.615 21 H 0.112 0.888 22 H 0.148 0.852 23 H 0.188 0.812 24 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 1.954 -3.796 11.206 11.992 hybrid contribution -0.552 0.971 0.588 1.262 sum 1.402 -2.825 11.794 12.209 Atomic orbital electron populations 1.81086 1.10891 1.12527 1.08615 1.23818 0.90266 0.91717 0.92331 1.16511 0.86591 1.22145 0.91161 1.74131 0.99264 1.16025 1.25690 1.82476 1.07830 1.30422 0.89569 1.46958 1.04716 1.29731 1.08131 1.21349 0.81195 1.44855 0.95669 0.82952 1.27228 1.03993 0.93239 0.97176 1.70205 1.30151 1.27714 1.11548 0.84563 0.72979 0.80124 0.78791 1.17557 1.18727 1.16017 1.18849 0.83927 1.19784 0.92964 1.21959 1.04438 1.02993 0.94455 1.20781 0.98987 1.01421 0.95209 1.20150 1.02424 0.98189 0.95530 1.26197 1.01000 1.03518 1.03714 1.84226 1.38344 1.32652 1.06264 0.88761 0.85212 0.81219 0.78198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -19.47 18.54 19.00 0.35 -19.12 14 2 C 0.33 14.97 15.24 88.33 1.35 16.32 14 3 C -0.01 -0.52 6.98 40.39 0.28 -0.24 14 4 N -0.29 -15.84 12.33 -51.29 -0.63 -16.47 14 5 N -0.13 -7.20 11.62 37.02 0.43 -6.77 14 6 N -0.13 -6.68 3.78 -178.66 -0.67 -7.35 14 7 C -0.29 -13.32 9.94 84.06 0.84 -12.49 14 8 H 0.15 6.17 6.46 -2.91 -0.02 6.15 14 9 C 0.00 0.15 5.50 84.98 0.47 0.62 14 10 N -0.77 -37.35 11.86 21.67 0.26 -37.09 14 11 Si 1.02 31.00 29.55 68.60 2.03 33.03 14 12 H -0.25 -7.28 7.11 99.48 0.71 -6.57 14 13 H -0.26 -7.77 7.11 99.48 0.71 -7.07 14 14 H -0.24 -6.57 7.11 99.48 0.71 -5.86 14 15 C -0.02 -0.78 6.87 40.77 0.28 -0.50 14 16 C -0.12 -4.60 5.86 24.05 0.14 -4.46 14 17 C -0.13 -4.36 9.69 21.72 0.21 -4.15 14 18 C -0.13 -3.38 10.14 21.11 0.21 -3.16 14 19 C -0.21 -4.84 11.22 66.84 0.75 -4.09 14 20 S 0.12 3.70 21.92 -56.49 -1.24 2.46 14 21 H 0.30 12.93 8.31 -92.71 -0.77 12.16 14 22 H 0.13 4.39 8.06 -2.91 -0.02 4.37 14 23 H 0.17 3.12 8.06 -2.91 -0.02 3.10 14 24 H 0.20 3.00 8.06 -2.91 -0.02 2.97 14 Total: -1.00 -60.52 251.29 6.31 -54.21 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: 1.26 Total: 9.25 kcal Atomic # 6 Polarization: -16.68 SS G_CDS: 4.53 Total: -12.16 kcal Atomic # 7 Polarization: -86.52 SS G_CDS: -0.27 Total: -86.79 kcal Atomic # 14 Polarization: 31.00 SS G_CDS: 2.03 Total: 33.03 kcal Atomic # 16 Polarization: 3.70 SS G_CDS: -1.24 Total: 2.46 kcal Total: -60.52 6.31 -54.21 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062295589.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.787 kcal (2) G-P(sol) polarization free energy of solvation -60.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds