Wall clock time and date at job start Mon Mar 30 2020 04:03:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31217 * 1 3 3 Si 1.86797 * 119.99904 * 2 1 4 4 H 1.48500 * 109.46997 * 85.02041 * 3 2 1 5 5 H 1.48500 * 109.47338 * 205.01970 * 3 2 1 6 6 H 1.48504 * 109.47115 * 325.01823 * 3 2 1 7 7 C 1.39083 * 120.00179 * 179.73014 * 2 1 3 8 8 H 1.07993 * 120.00122 * 186.41589 * 7 2 1 9 9 N 1.37323 * 119.99585 * 6.41350 * 7 2 1 10 10 N 1.40311 * 126.94853 * 5.21390 * 9 7 2 11 11 N 1.28670 * 108.34826 * 179.81485 * 10 9 7 12 12 C 1.33103 * 110.33383 * 0.45852 * 11 10 9 13 13 C 1.50694 * 125.56956 * 179.70611 * 12 11 10 14 14 O 1.42904 * 109.46860 * 269.99842 * 13 12 11 15 15 C 1.36380 * 108.85596 * 359.70689 * 12 11 10 16 16 C 1.47845 * 126.82428 * 179.97438 * 15 12 11 17 17 C 1.40018 * 120.56006 * 134.72522 * 16 15 12 18 18 C 1.38348 * 118.28811 * 179.71755 * 17 16 15 19 19 C 1.38349 * 119.31127 * 0.59842 * 18 17 16 20 20 N 1.31911 * 121.08318 * 359.66097 * 19 18 17 21 21 C 1.31707 * 121.87761 * 0.02562 * 20 19 18 22 22 H 0.97002 * 120.00287 * 359.97438 * 1 2 3 23 23 H 1.08991 * 109.47521 * 30.00293 * 13 12 11 24 24 H 1.09007 * 109.46902 * 150.00308 * 13 12 11 25 25 H 0.96703 * 113.99265 * 180.02562 * 14 13 12 26 26 H 1.07997 * 120.85345 * 359.97438 * 17 16 15 27 27 H 1.08005 * 120.34164 * 180.28057 * 18 17 16 28 28 H 1.07997 * 119.45938 * 179.67611 * 19 18 17 29 29 H 1.07996 * 119.71916 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3122 0.0000 0.0000 3 14 2.2461 1.6177 0.0000 4 1 2.3884 2.1071 1.3948 5 1 3.5924 1.4121 -0.5921 6 1 1.5001 2.6200 -0.8027 7 6 2.0076 -1.2045 0.0057 8 1 3.0825 -1.2069 0.1102 9 7 1.3274 -2.3906 -0.1216 10 7 -0.0445 -2.5540 -0.3660 11 7 -0.2987 -3.8141 -0.4221 12 6 0.8121 -4.5194 -0.2213 13 6 0.9053 -6.0234 -0.2084 14 8 0.6930 -6.5023 1.1212 15 6 1.8522 -3.6583 -0.0293 16 6 3.2634 -4.0167 0.2277 17 6 4.2988 -3.3641 -0.4524 18 6 5.6023 -3.7326 -0.1711 19 6 5.8386 -4.7330 0.7548 20 7 4.8428 -5.3345 1.3766 21 6 3.5857 -5.0151 1.1479 22 1 -0.4851 0.8400 0.0004 23 1 0.1463 -6.4401 -0.8703 24 1 1.8938 -6.3291 -0.5512 25 1 0.7392 -7.4646 1.2046 26 1 4.0855 -2.5902 -1.1747 27 1 6.4267 -3.2478 -0.6731 28 1 6.8550 -5.0262 0.9722 29 1 2.7976 -5.5307 1.6765 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062295780.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:44 Heat of formation + Delta-G solvation = 71.997649 kcal Electronic energy + Delta-G solvation = -17345.606480 eV Core-core repulsion = 14463.675226 eV Total energy + Delta-G solvation = -2881.931254 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.48303 -39.23591 -36.22187 -34.36001 -32.76639 -31.50380 -31.19562 -28.88405 -26.33632 -24.66384 -23.21795 -22.91897 -21.04185 -19.43148 -17.75599 -16.92122 -16.54434 -15.92533 -15.65300 -14.98581 -14.60279 -13.98352 -13.79653 -13.32664 -13.28182 -13.14952 -12.66036 -12.15938 -11.78978 -11.54310 -11.45058 -11.21130 -10.72252 -10.13572 -9.90281 -9.75183 -9.54500 -9.25912 -9.18038 -8.92847 -8.59155 -7.35403 -7.04906 -4.79430 1.38263 1.67421 2.69294 2.84359 2.91833 3.13402 3.52937 3.78328 4.15889 4.43882 4.62294 4.85537 5.17068 5.22889 5.43429 5.45343 5.54094 5.68711 5.77807 6.01791 6.03203 6.17284 6.48440 6.55421 6.67809 6.75044 6.97605 7.14681 7.57395 7.69798 8.12429 8.26966 8.36476 8.89044 9.91567 10.03305 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.019121 B = 0.009956 C = 0.006879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.991776 B = 2811.572589 C = 4069.435279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.743 5.743 2 C 0.046 3.954 3 Si 0.943 3.057 4 H -0.265 1.265 5 H -0.257 1.257 6 H -0.269 1.269 7 C -0.295 4.295 8 H 0.125 0.875 9 N -0.129 5.129 10 N -0.096 5.096 11 N -0.308 5.308 12 C -0.053 4.053 13 C 0.175 3.825 14 O -0.568 6.568 15 C -0.059 4.059 16 C -0.018 4.018 17 C -0.077 4.077 18 C -0.171 4.171 19 C 0.072 3.928 20 N -0.485 5.485 21 C 0.105 3.895 22 H 0.288 0.712 23 H 0.050 0.950 24 H 0.046 0.954 25 H 0.369 0.631 26 H 0.135 0.865 27 H 0.129 0.871 28 H 0.148 0.852 29 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.286 -4.160 -0.948 10.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.368 5.368 2 C -0.176 4.176 3 Si 0.765 3.235 4 H -0.190 1.190 5 H -0.181 1.181 6 H -0.194 1.194 7 C -0.434 4.434 8 H 0.142 0.858 9 N 0.102 4.898 10 N -0.072 5.072 11 N -0.165 5.165 12 C -0.204 4.204 13 C 0.096 3.904 14 O -0.372 6.372 15 C -0.193 4.193 16 C -0.022 4.022 17 C -0.104 4.104 18 C -0.191 4.191 19 C -0.085 4.085 20 N -0.193 5.193 21 C -0.054 4.054 22 H 0.099 0.901 23 H 0.068 0.932 24 H 0.064 0.936 25 H 0.214 0.786 26 H 0.152 0.848 27 H 0.147 0.853 28 H 0.165 0.835 29 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 7.670 -3.335 -0.503 8.378 hybrid contribution 1.241 0.610 -0.584 1.501 sum 8.911 -2.724 -1.087 9.381 Atomic orbital electron populations 1.70103 1.06640 1.29788 1.30293 1.25882 0.95843 1.01085 0.94777 0.85659 0.79677 0.78697 0.79505 1.18987 1.18115 1.19358 1.20340 0.93161 0.80692 1.49182 0.85787 1.46840 1.07819 1.03700 1.31478 1.82547 0.88822 1.06953 1.28873 1.73753 1.24880 1.00550 1.17285 1.20304 0.89305 0.94278 1.16471 1.19941 0.98402 0.88769 0.83319 1.86637 1.95326 1.25605 1.29590 1.19078 0.92953 0.85969 1.21273 1.18889 0.90641 0.96631 0.96041 1.21798 0.92011 0.98703 0.97911 1.21962 0.97121 0.99540 1.00438 1.22617 0.98158 0.93736 0.94006 1.67635 1.00151 1.27106 1.24429 1.23125 0.93170 0.94858 0.94211 0.90144 0.93187 0.93558 0.78567 0.84752 0.85278 0.83480 0.81851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -19.40 11.95 55.50 0.66 -18.74 15 2 C 0.05 1.11 5.49 -17.50 -0.10 1.01 15 3 Si 0.94 17.39 29.56 -169.99 -5.02 12.37 15 4 H -0.26 -4.83 7.11 56.52 0.40 -4.43 15 5 H -0.26 -4.50 7.11 56.52 0.40 -4.10 15 6 H -0.27 -4.88 7.11 56.52 0.40 -4.48 15 7 C -0.30 -7.39 9.68 -14.78 -0.14 -7.53 15 8 H 0.12 2.79 6.18 -52.49 -0.32 2.47 15 9 N -0.13 -3.48 3.79 -8.16 -0.03 -3.51 15 10 N -0.10 -2.82 11.77 60.35 0.71 -2.11 15 11 N -0.31 -8.51 12.29 33.36 0.41 -8.10 15 12 C -0.05 -1.29 6.75 -82.71 -0.56 -1.85 15 13 C 0.17 3.27 6.61 36.00 0.24 3.51 15 14 O -0.57 -9.94 12.40 -35.23 -0.44 -10.37 15 15 C -0.06 -1.43 6.51 -82.05 -0.53 -1.97 15 16 C -0.02 -0.36 5.36 -104.81 -0.56 -0.92 15 17 C -0.08 -1.37 8.61 -38.87 -0.33 -1.71 15 18 C -0.17 -2.47 10.10 -39.50 -0.40 -2.87 15 19 C 0.07 1.05 11.17 -17.48 -0.20 0.86 15 20 N -0.48 -8.41 10.35 -12.90 -0.13 -8.54 15 21 C 0.10 1.98 9.88 -17.12 -0.17 1.81 15 22 H 0.29 6.72 8.30 -40.82 -0.34 6.38 15 23 H 0.05 0.87 8.14 -51.93 -0.42 0.44 15 24 H 0.05 0.77 7.46 -51.92 -0.39 0.39 15 25 H 0.37 4.14 9.12 45.56 0.42 4.56 15 26 H 0.13 2.37 7.33 -52.49 -0.38 1.99 15 27 H 0.13 1.43 8.06 -52.48 -0.42 1.01 15 28 H 0.15 1.63 8.06 -52.49 -0.42 1.21 15 29 H 0.16 3.10 6.41 -52.49 -0.34 2.76 15 LS Contribution 262.63 15.07 3.96 3.96 Total: -1.00 -32.47 262.63 -4.06 -36.53 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -1.42 Total: 8.19 kcal Atomic # 6 Polarization: -6.91 SS G_CDS: -2.75 Total: -9.66 kcal Atomic # 7 Polarization: -42.62 SS G_CDS: 1.62 Total: -41.01 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: -0.44 Total: -10.37 kcal Atomic # 14 Polarization: 17.39 SS G_CDS: -5.02 Total: 12.37 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -32.47 -4.06 -36.53 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062295780.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.524 kcal (2) G-P(sol) polarization free energy of solvation -32.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds