Wall clock time and date at job start Mon Mar 30 2020 04:03:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31217 * 1 3 3 Si 1.86797 * 119.99904 * 2 1 4 4 H 1.48500 * 109.46997 * 85.02041 * 3 2 1 5 5 H 1.48500 * 109.47338 * 205.01970 * 3 2 1 6 6 H 1.48504 * 109.47115 * 325.01823 * 3 2 1 7 7 C 1.39083 * 120.00179 * 179.73014 * 2 1 3 8 8 H 1.07993 * 120.00122 * 186.41589 * 7 2 1 9 9 N 1.37323 * 119.99585 * 6.41350 * 7 2 1 10 10 N 1.40311 * 126.94853 * 5.21390 * 9 7 2 11 11 N 1.28670 * 108.34826 * 179.81485 * 10 9 7 12 12 C 1.33103 * 110.33383 * 0.45852 * 11 10 9 13 13 C 1.50694 * 125.56956 * 179.70611 * 12 11 10 14 14 O 1.42904 * 109.46860 * 269.99842 * 13 12 11 15 15 C 1.36380 * 108.85596 * 359.70689 * 12 11 10 16 16 C 1.47845 * 126.82428 * 179.97438 * 15 12 11 17 17 C 1.40018 * 120.56006 * 134.72522 * 16 15 12 18 18 C 1.38348 * 118.28811 * 179.71755 * 17 16 15 19 19 C 1.38349 * 119.31127 * 0.59842 * 18 17 16 20 20 N 1.31911 * 121.08318 * 359.66097 * 19 18 17 21 21 C 1.31707 * 121.87761 * 0.02562 * 20 19 18 22 22 H 0.97002 * 120.00287 * 359.97438 * 1 2 3 23 23 H 1.08991 * 109.47521 * 30.00293 * 13 12 11 24 24 H 1.09007 * 109.46902 * 150.00308 * 13 12 11 25 25 H 0.96703 * 113.99265 * 180.02562 * 14 13 12 26 26 H 1.07997 * 120.85345 * 359.97438 * 17 16 15 27 27 H 1.08005 * 120.34164 * 180.28057 * 18 17 16 28 28 H 1.07997 * 119.45938 * 179.67611 * 19 18 17 29 29 H 1.07996 * 119.71916 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3122 0.0000 0.0000 3 14 2.2461 1.6177 0.0000 4 1 2.3884 2.1071 1.3948 5 1 3.5924 1.4121 -0.5921 6 1 1.5001 2.6200 -0.8027 7 6 2.0076 -1.2045 0.0057 8 1 3.0825 -1.2069 0.1102 9 7 1.3274 -2.3906 -0.1216 10 7 -0.0445 -2.5540 -0.3660 11 7 -0.2987 -3.8141 -0.4221 12 6 0.8121 -4.5194 -0.2213 13 6 0.9053 -6.0234 -0.2084 14 8 0.6930 -6.5023 1.1212 15 6 1.8522 -3.6583 -0.0293 16 6 3.2634 -4.0167 0.2277 17 6 4.2988 -3.3641 -0.4524 18 6 5.6023 -3.7326 -0.1711 19 6 5.8386 -4.7330 0.7548 20 7 4.8428 -5.3345 1.3766 21 6 3.5857 -5.0151 1.1479 22 1 -0.4851 0.8400 0.0004 23 1 0.1463 -6.4401 -0.8703 24 1 1.8938 -6.3291 -0.5512 25 1 0.7392 -7.4646 1.2046 26 1 4.0855 -2.5902 -1.1747 27 1 6.4267 -3.2478 -0.6731 28 1 6.8550 -5.0262 0.9722 29 1 2.7976 -5.5307 1.6765 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062295780.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:44 Heat of formation + Delta-G solvation = 45.942791 kcal Electronic energy + Delta-G solvation = -17346.736304 eV Core-core repulsion = 14463.675226 eV Total energy + Delta-G solvation = -2883.061078 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.29210 -40.64109 -37.67030 -36.18336 -34.36308 -33.01201 -32.81263 -30.48621 -28.12691 -26.35969 -24.73490 -24.28384 -22.84259 -21.17099 -19.53334 -18.33201 -17.88310 -17.66293 -17.03769 -16.46737 -16.19837 -15.73658 -15.38392 -14.77309 -14.64958 -14.58490 -14.03577 -13.80770 -13.46350 -13.12711 -12.96548 -12.68657 -12.12913 -11.88951 -11.69413 -11.50502 -11.02586 -10.85045 -10.64338 -10.42850 -10.12676 -9.14799 -8.83829 -6.72371 0.00362 0.35123 1.04470 1.32249 1.53959 1.58027 1.90715 1.99785 2.53053 2.78287 3.00456 3.57614 3.74690 3.96146 4.04979 4.07512 4.15091 4.21501 4.27787 4.52843 4.67296 4.79169 4.88594 4.99744 5.10430 5.21924 5.43238 5.77971 5.81864 5.86661 6.43478 7.00613 7.04845 7.08080 8.07619 8.17162 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.019121 B = 0.009956 C = 0.006879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.991776 B = 2811.572589 C = 4069.435279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.000 4.000 3 Si 1.024 2.976 4 H -0.259 1.259 5 H -0.236 1.236 6 H -0.266 1.266 7 C -0.322 4.322 8 H 0.145 0.855 9 N -0.144 5.144 10 N -0.155 5.155 11 N -0.345 5.345 12 C -0.064 4.064 13 C 0.184 3.816 14 O -0.583 6.583 15 C -0.064 4.064 16 C -0.050 4.050 17 C -0.083 4.083 18 C -0.153 4.153 19 C 0.086 3.914 20 N -0.496 5.496 21 C 0.104 3.896 22 H 0.293 0.707 23 H 0.061 0.939 24 H 0.069 0.931 25 H 0.397 0.603 26 H 0.130 0.870 27 H 0.174 0.826 28 H 0.194 0.806 29 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.200 -4.264 -0.854 13.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.217 4.217 3 Si 0.840 3.160 4 H -0.184 1.184 5 H -0.158 1.158 6 H -0.190 1.190 7 C -0.460 4.460 8 H 0.162 0.838 9 N 0.086 4.914 10 N -0.129 5.129 11 N -0.201 5.201 12 C -0.214 4.214 13 C 0.104 3.896 14 O -0.391 6.391 15 C -0.198 4.198 16 C -0.054 4.054 17 C -0.110 4.110 18 C -0.172 4.172 19 C -0.072 4.072 20 N -0.204 5.204 21 C -0.054 4.054 22 H 0.104 0.896 23 H 0.079 0.921 24 H 0.087 0.913 25 H 0.247 0.753 26 H 0.147 0.853 27 H 0.192 0.808 28 H 0.211 0.789 29 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 11.562 -3.502 -0.405 12.088 hybrid contribution 0.204 0.488 -0.572 0.780 sum 11.766 -3.014 -0.978 12.185 Atomic orbital electron populations 1.70245 1.08945 1.31202 1.31733 1.27205 0.96528 1.04905 0.93038 0.84518 0.78873 0.72853 0.79762 1.18364 1.15812 1.19040 1.21052 0.94276 0.80878 1.49812 0.83762 1.47121 1.07455 1.05163 1.31707 1.82439 0.90681 1.07856 1.31965 1.73698 1.26580 1.00711 1.19134 1.21293 0.88561 0.97027 1.14566 1.19907 1.00019 0.85537 0.84103 1.86547 1.95399 1.28457 1.28745 1.19827 0.95047 0.85070 1.19889 1.18873 0.89158 0.98814 0.98571 1.21909 0.93021 0.98379 0.97670 1.22387 0.96620 0.98695 0.99529 1.23447 0.99361 0.92234 0.92135 1.67717 0.99835 1.27791 1.25075 1.22920 0.93937 0.94511 0.94025 0.89644 0.92082 0.91298 0.75250 0.85254 0.80827 0.78911 0.82817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -43.34 11.95 21.67 0.26 -43.08 15 2 C 0.00 0.00 5.49 84.99 0.47 0.47 15 3 Si 1.02 35.07 29.56 68.60 2.03 37.10 15 4 H -0.26 -8.57 7.11 99.48 0.71 -7.87 15 5 H -0.24 -7.16 7.11 99.48 0.71 -6.45 15 6 H -0.27 -8.88 7.11 99.48 0.71 -8.18 15 7 C -0.32 -16.45 9.68 84.04 0.81 -15.64 15 8 H 0.15 6.45 6.18 -2.91 -0.02 6.43 15 9 N -0.14 -8.11 3.79 -179.72 -0.68 -8.79 15 10 N -0.15 -9.59 11.77 37.02 0.44 -9.16 15 11 N -0.34 -20.11 12.29 -48.36 -0.59 -20.70 15 12 C -0.06 -3.18 6.75 41.93 0.28 -2.90 15 13 C 0.18 6.83 6.61 71.23 0.47 7.31 15 14 O -0.58 -20.09 12.40 -148.98 -1.85 -21.94 15 15 C -0.06 -3.21 6.51 40.36 0.26 -2.95 15 16 C -0.05 -1.99 5.36 -19.99 -0.11 -2.10 15 17 C -0.08 -2.76 8.61 22.73 0.20 -2.57 15 18 C -0.15 -3.69 10.10 22.32 0.23 -3.47 15 19 C 0.09 2.07 11.17 84.71 0.95 3.02 15 20 N -0.50 -15.60 10.35 -194.74 -2.01 -17.62 15 21 C 0.10 3.77 9.88 85.03 0.84 4.61 15 22 H 0.29 14.32 8.30 -92.71 -0.77 13.55 15 23 H 0.06 2.10 8.14 -2.39 -0.02 2.08 15 24 H 0.07 2.23 7.46 -2.38 -0.02 2.21 15 25 H 0.40 8.30 9.12 -74.06 -0.68 7.62 15 26 H 0.13 4.39 7.33 -2.91 -0.02 4.37 15 27 H 0.17 2.69 8.06 -2.91 -0.02 2.66 15 28 H 0.19 2.93 8.06 -2.91 -0.02 2.91 15 29 H 0.15 5.79 6.41 -2.91 -0.02 5.77 15 Total: -1.00 -75.81 262.63 2.51 -73.30 By element: Atomic # 1 Polarization: 24.57 SS G_CDS: 0.53 Total: 25.11 kcal Atomic # 6 Polarization: -18.61 SS G_CDS: 4.40 Total: -14.21 kcal Atomic # 7 Polarization: -96.75 SS G_CDS: -2.60 Total: -99.35 kcal Atomic # 8 Polarization: -20.09 SS G_CDS: -1.85 Total: -21.94 kcal Atomic # 14 Polarization: 35.07 SS G_CDS: 2.03 Total: 37.10 kcal Total: -75.81 2.51 -73.30 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062295780.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.240 kcal (2) G-P(sol) polarization free energy of solvation -75.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds