Wall clock time and date at job start Mon Mar 30 2020 04:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31204 * 1 3 3 Si 1.86790 * 120.00072 * 2 1 4 4 H 1.48499 * 109.47287 * 269.99912 * 3 2 1 5 5 H 1.48510 * 109.47159 * 29.99875 * 3 2 1 6 6 H 1.48504 * 109.47438 * 149.99736 * 3 2 1 7 7 C 1.39116 * 119.99743 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99520 * 180.02562 * 7 2 1 9 9 N 1.37296 * 120.00380 * 0.02562 * 7 2 1 10 10 N 1.40319 * 126.94393 * 359.97438 * 9 7 2 11 11 N 1.28671 * 108.34718 * 179.74878 * 10 9 7 12 12 C 1.33089 * 110.34226 * 0.41277 * 11 10 9 13 13 C 1.50699 * 125.56972 * 179.84943 * 12 11 10 14 14 O 1.42903 * 109.47152 * 269.69197 * 13 12 11 15 15 C 1.36397 * 108.85640 * 359.58194 * 12 11 10 16 16 C 1.47803 * 126.82861 * 180.22392 * 15 12 11 17 17 C 1.40029 * 120.92851 * 314.72067 * 16 15 12 18 18 C 1.37894 * 118.99229 * 179.72746 * 17 16 15 19 19 N 1.31966 * 120.89998 * 0.55787 * 18 17 16 20 20 C 1.31959 * 122.07091 * 359.71566 * 19 18 17 21 21 C 1.37904 * 120.90145 * 359.97438 * 20 19 18 22 22 H 0.96997 * 119.99823 * 0.02562 * 1 2 3 23 23 H 1.08997 * 109.47198 * 149.68875 * 13 12 11 24 24 H 1.09008 * 109.47393 * 29.68591 * 13 12 11 25 25 H 0.96700 * 114.00311 * 180.02562 * 14 13 12 26 26 H 1.08004 * 120.50138 * 0.02562 * 17 16 15 27 27 H 1.07993 * 119.55132 * 180.27072 * 18 17 16 28 28 H 1.07994 * 119.55087 * 180.02562 * 20 19 18 29 29 H 1.08002 * 120.50070 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3120 0.0000 0.0000 3 14 2.2460 1.6176 0.0000 4 1 2.4936 2.0463 -1.4000 5 1 1.4434 2.6527 0.7001 6 1 3.5436 1.4401 0.7001 7 6 2.0076 -1.2048 0.0005 8 1 3.0876 -1.2048 0.0010 9 7 1.3211 -2.3938 0.0005 10 7 -0.0718 -2.5635 0.0005 11 7 -0.3262 -3.8248 -0.0048 12 6 0.8056 -4.5251 0.0005 13 6 0.9061 -6.0287 0.0000 14 8 0.9382 -6.5044 1.3471 15 6 1.8596 -3.6594 0.0005 16 6 3.2952 -4.0113 0.0009 17 6 3.7928 -5.0033 0.8548 18 6 5.1381 -5.3035 0.8180 19 7 5.9534 -4.6630 0.0016 20 6 5.5273 -3.7181 -0.8151 21 6 4.1965 -3.3583 -0.8488 22 1 -0.4850 0.8400 -0.0004 23 1 1.8182 -6.3317 -0.5142 24 1 0.0422 -6.4505 -0.5137 25 1 1.0029 -7.4663 1.4232 26 1 3.1320 -5.5287 1.5284 27 1 5.5308 -6.0701 1.4695 28 1 6.2302 -3.2204 -1.4666 29 1 3.8548 -2.5837 -1.5195 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062295786.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:46 Heat of formation + Delta-G solvation = 72.508114 kcal Electronic energy + Delta-G solvation = -17334.880720 eV Core-core repulsion = 14452.971601 eV Total energy + Delta-G solvation = -2881.909119 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.49144 -39.22877 -36.26253 -34.38872 -32.96519 -31.38581 -30.72094 -29.22950 -26.42051 -24.71882 -23.21175 -22.87547 -21.09226 -19.49842 -17.82829 -16.96101 -16.35429 -15.69375 -15.45239 -15.14386 -14.62956 -14.04729 -13.92956 -13.46015 -13.25180 -13.15788 -12.81035 -12.13240 -11.75702 -11.55920 -11.35972 -11.16465 -10.72958 -10.18285 -9.89131 -9.85268 -9.51526 -9.22978 -9.07398 -8.77013 -8.74002 -7.44359 -7.06244 -4.82466 1.49606 1.57845 2.70038 2.84053 2.91448 3.13858 3.51753 3.76119 4.16590 4.41240 4.61538 4.80985 5.11568 5.28826 5.38092 5.59980 5.63971 5.67324 5.74853 5.99896 6.07449 6.20027 6.46131 6.52578 6.69892 6.73786 7.02969 7.13762 7.55164 7.67711 8.08163 8.24652 8.35095 8.85948 9.89323 10.01129 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.018960 B = 0.009962 C = 0.006855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.452716 B = 2810.117976 C = 4083.646540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.741 5.741 2 C 0.044 3.956 3 Si 0.944 3.056 4 H -0.263 1.263 5 H -0.269 1.269 6 H -0.257 1.257 7 C -0.290 4.290 8 H 0.126 0.874 9 N -0.127 5.127 10 N -0.095 5.095 11 N -0.309 5.309 12 C -0.050 4.050 13 C 0.175 3.825 14 O -0.568 6.568 15 C -0.070 4.070 16 C 0.074 3.926 17 C -0.164 4.164 18 C 0.091 3.909 19 N -0.503 5.503 20 C 0.094 3.906 21 C -0.170 4.170 22 H 0.288 0.712 23 H 0.047 0.953 24 H 0.050 0.950 25 H 0.368 0.632 26 H 0.142 0.858 27 H 0.150 0.850 28 H 0.150 0.850 29 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.752 -4.905 -0.896 9.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.366 5.366 2 C -0.178 4.178 3 Si 0.766 3.234 4 H -0.188 1.188 5 H -0.194 1.194 6 H -0.181 1.181 7 C -0.430 4.430 8 H 0.144 0.856 9 N 0.104 4.896 10 N -0.071 5.071 11 N -0.166 5.166 12 C -0.201 4.201 13 C 0.096 3.904 14 O -0.371 6.371 15 C -0.203 4.203 16 C 0.063 3.937 17 C -0.185 4.185 18 C -0.065 4.065 19 N -0.214 5.214 20 C -0.062 4.062 21 C -0.191 4.191 22 H 0.099 0.901 23 H 0.065 0.935 24 H 0.068 0.932 25 H 0.213 0.787 26 H 0.160 0.840 27 H 0.167 0.833 28 H 0.167 0.833 29 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 6.818 -3.654 -0.770 7.773 hybrid contribution 0.420 0.111 -0.135 0.455 sum 7.238 -3.543 -0.905 8.109 Atomic orbital electron populations 1.70116 1.06618 1.29829 1.30051 1.25916 0.95898 1.01135 0.94853 0.85648 0.79657 0.78460 0.79669 1.18805 1.19398 1.18108 1.20406 0.92735 0.80493 1.49338 0.85632 1.46859 1.07016 1.03710 1.32028 1.82598 0.87354 1.06696 1.30428 1.73750 1.25338 1.00712 1.16799 1.20294 0.88500 0.94274 1.16995 1.19945 0.98909 0.88806 0.82718 1.86639 1.97262 1.25571 1.27672 1.19128 0.91854 0.86043 1.23279 1.18205 0.89974 0.93128 0.92367 1.22396 0.96736 0.99507 0.99829 1.22514 0.89895 0.97868 0.96201 1.67564 1.39499 1.08119 1.06192 1.22500 0.93661 0.93915 0.96166 1.22350 0.94292 1.01967 1.00484 0.90108 0.93495 0.93223 0.78686 0.84003 0.83265 0.83253 0.84692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -19.21 11.89 55.50 0.66 -18.55 15 2 C 0.04 1.05 5.50 -17.49 -0.10 0.96 15 3 Si 0.94 17.34 29.55 -169.99 -5.02 12.32 15 4 H -0.26 -4.69 7.11 56.52 0.40 -4.29 15 5 H -0.27 -4.89 7.11 56.52 0.40 -4.48 15 6 H -0.26 -4.58 7.11 56.52 0.40 -4.18 15 7 C -0.29 -7.25 9.61 -14.78 -0.14 -7.39 15 8 H 0.13 2.83 6.36 -52.49 -0.33 2.50 15 9 N -0.13 -3.42 3.79 -8.16 -0.03 -3.45 15 10 N -0.10 -2.79 11.71 60.35 0.71 -2.08 15 11 N -0.31 -8.54 12.28 33.36 0.41 -8.13 15 12 C -0.05 -1.20 6.75 -82.71 -0.56 -1.76 15 13 C 0.18 3.24 6.64 36.01 0.24 3.48 15 14 O -0.57 -9.67 12.46 -35.23 -0.44 -10.11 15 15 C -0.07 -1.70 6.53 -82.06 -0.54 -2.24 15 16 C 0.07 1.48 5.36 -104.64 -0.56 0.92 15 17 C -0.16 -2.86 8.83 -39.04 -0.34 -3.20 15 18 C 0.09 1.41 11.17 -17.62 -0.20 1.21 15 19 N -0.50 -8.27 10.35 -13.37 -0.14 -8.41 15 20 C 0.09 1.48 11.17 -17.62 -0.20 1.29 15 21 C -0.17 -3.06 8.58 -39.03 -0.33 -3.40 15 22 H 0.29 6.68 8.30 -40.82 -0.34 6.34 15 23 H 0.05 0.77 7.48 -51.93 -0.39 0.38 15 24 H 0.05 0.86 8.14 -51.92 -0.42 0.43 15 25 H 0.37 3.91 9.12 45.56 0.42 4.33 15 26 H 0.14 2.44 6.54 -52.48 -0.34 2.10 15 27 H 0.15 1.79 8.06 -52.49 -0.42 1.37 15 28 H 0.15 1.87 8.06 -52.49 -0.42 1.45 15 29 H 0.14 2.41 7.41 -52.49 -0.39 2.02 15 LS Contribution 262.97 15.07 3.96 3.96 Total: -1.00 -32.54 262.97 -4.06 -36.60 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -1.44 Total: 7.97 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: -2.73 Total: -10.13 kcal Atomic # 7 Polarization: -42.23 SS G_CDS: 1.61 Total: -40.62 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: -0.44 Total: -10.11 kcal Atomic # 14 Polarization: 17.34 SS G_CDS: -5.02 Total: 12.32 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -32.54 -4.06 -36.60 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062295786.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.113 kcal (2) G-P(sol) polarization free energy of solvation -32.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.605 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds