Wall clock time and date at job start Mon Mar 30 2020 04:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31204 * 1 3 3 Si 1.86790 * 120.00072 * 2 1 4 4 H 1.48499 * 109.47287 * 269.99912 * 3 2 1 5 5 H 1.48510 * 109.47159 * 29.99875 * 3 2 1 6 6 H 1.48504 * 109.47438 * 149.99736 * 3 2 1 7 7 C 1.39116 * 119.99743 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99520 * 180.02562 * 7 2 1 9 9 N 1.37296 * 120.00380 * 0.02562 * 7 2 1 10 10 N 1.40319 * 126.94393 * 359.97438 * 9 7 2 11 11 N 1.28671 * 108.34718 * 179.74878 * 10 9 7 12 12 C 1.33089 * 110.34226 * 0.41277 * 11 10 9 13 13 C 1.50699 * 125.56972 * 179.84943 * 12 11 10 14 14 O 1.42903 * 109.47152 * 269.69197 * 13 12 11 15 15 C 1.36397 * 108.85640 * 359.58194 * 12 11 10 16 16 C 1.47803 * 126.82861 * 180.22392 * 15 12 11 17 17 C 1.40029 * 120.92851 * 314.72067 * 16 15 12 18 18 C 1.37894 * 118.99229 * 179.72746 * 17 16 15 19 19 N 1.31966 * 120.89998 * 0.55787 * 18 17 16 20 20 C 1.31959 * 122.07091 * 359.71566 * 19 18 17 21 21 C 1.37904 * 120.90145 * 359.97438 * 20 19 18 22 22 H 0.96997 * 119.99823 * 0.02562 * 1 2 3 23 23 H 1.08997 * 109.47198 * 149.68875 * 13 12 11 24 24 H 1.09008 * 109.47393 * 29.68591 * 13 12 11 25 25 H 0.96700 * 114.00311 * 180.02562 * 14 13 12 26 26 H 1.08004 * 120.50138 * 0.02562 * 17 16 15 27 27 H 1.07993 * 119.55132 * 180.27072 * 18 17 16 28 28 H 1.07994 * 119.55087 * 180.02562 * 20 19 18 29 29 H 1.08002 * 120.50070 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3120 0.0000 0.0000 3 14 2.2460 1.6176 0.0000 4 1 2.4936 2.0463 -1.4000 5 1 1.4434 2.6527 0.7001 6 1 3.5436 1.4401 0.7001 7 6 2.0076 -1.2048 0.0005 8 1 3.0876 -1.2048 0.0010 9 7 1.3211 -2.3938 0.0005 10 7 -0.0718 -2.5635 0.0005 11 7 -0.3262 -3.8248 -0.0048 12 6 0.8056 -4.5251 0.0005 13 6 0.9061 -6.0287 0.0000 14 8 0.9382 -6.5044 1.3471 15 6 1.8596 -3.6594 0.0005 16 6 3.2952 -4.0113 0.0009 17 6 3.7928 -5.0033 0.8548 18 6 5.1381 -5.3035 0.8180 19 7 5.9534 -4.6630 0.0016 20 6 5.5273 -3.7181 -0.8151 21 6 4.1965 -3.3583 -0.8488 22 1 -0.4850 0.8400 -0.0004 23 1 1.8182 -6.3317 -0.5142 24 1 0.0422 -6.4505 -0.5137 25 1 1.0029 -7.4663 1.4232 26 1 3.1320 -5.5287 1.5284 27 1 5.5308 -6.0701 1.4695 28 1 6.2302 -3.2204 -1.4666 29 1 3.8548 -2.5837 -1.5195 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062295786.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:46 Heat of formation + Delta-G solvation = 46.669796 kcal Electronic energy + Delta-G solvation = -17336.001153 eV Core-core repulsion = 14452.971601 eV Total energy + Delta-G solvation = -2883.029552 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.30369 -40.62450 -37.67160 -36.20913 -34.54014 -33.15217 -32.05590 -30.87969 -28.20387 -26.40290 -24.78537 -24.20805 -22.88028 -21.21222 -19.59252 -18.32615 -17.98161 -17.20394 -16.91472 -16.53749 -16.21398 -15.77474 -15.46608 -14.92260 -14.62856 -14.51269 -14.31626 -13.78921 -13.47665 -13.16247 -12.86722 -12.55077 -12.14345 -11.93884 -11.71177 -11.55443 -11.01995 -10.86012 -10.53835 -10.41629 -10.02356 -9.28043 -8.84846 -6.75362 0.02866 0.29071 1.06317 1.31755 1.52599 1.58754 1.89468 1.99123 2.51547 2.77289 3.01728 3.64395 3.71724 3.81064 4.04784 4.14193 4.17911 4.25169 4.30645 4.53518 4.72057 4.76911 4.89237 4.99293 5.09435 5.10935 5.53016 5.77811 5.80292 5.84539 6.41111 7.00007 7.05732 7.07069 8.06147 8.14998 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.018960 B = 0.009962 C = 0.006855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.452716 B = 2810.117976 C = 4083.646540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.000 4.000 3 Si 1.025 2.975 4 H -0.251 1.251 5 H -0.267 1.267 6 H -0.243 1.243 7 C -0.317 4.317 8 H 0.145 0.855 9 N -0.142 5.142 10 N -0.154 5.154 11 N -0.347 5.347 12 C -0.059 4.059 13 C 0.184 3.816 14 O -0.582 6.582 15 C -0.078 4.078 16 C 0.045 3.955 17 C -0.162 4.162 18 C 0.105 3.895 19 N -0.506 5.506 20 C 0.105 3.895 21 C -0.177 4.177 22 H 0.294 0.706 23 H 0.072 0.928 24 H 0.059 0.941 25 H 0.398 0.602 26 H 0.143 0.857 27 H 0.190 0.810 28 H 0.186 0.814 29 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.958 -5.451 -0.764 12.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.218 4.218 3 Si 0.841 3.159 4 H -0.175 1.175 5 H -0.191 1.191 6 H -0.166 1.166 7 C -0.456 4.456 8 H 0.162 0.838 9 N 0.088 4.912 10 N -0.128 5.128 11 N -0.203 5.203 12 C -0.210 4.210 13 C 0.105 3.895 14 O -0.390 6.390 15 C -0.211 4.211 16 C 0.034 3.966 17 C -0.183 4.183 18 C -0.051 4.051 19 N -0.216 5.216 20 C -0.051 4.051 21 C -0.198 4.198 22 H 0.104 0.896 23 H 0.090 0.910 24 H 0.077 0.923 25 H 0.248 0.752 26 H 0.161 0.839 27 H 0.207 0.793 28 H 0.203 0.797 29 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 10.010 -4.260 -0.637 10.897 hybrid contribution -0.467 0.118 -0.152 0.505 sum 9.543 -4.142 -0.789 10.433 Atomic orbital electron populations 1.70254 1.08847 1.31246 1.31364 1.27209 0.96571 1.04845 0.93131 0.84513 0.78376 0.72748 0.80281 1.17528 1.19117 1.16622 1.21086 0.93762 0.80719 1.50008 0.83815 1.47147 1.06708 1.05179 1.32196 1.82497 0.89138 1.07631 1.33562 1.73697 1.27049 1.00861 1.18696 1.21314 0.87681 0.97129 1.14907 1.19906 1.00521 0.85394 0.83710 1.86543 1.97324 1.28552 1.26580 1.19908 0.94095 0.85168 1.21953 1.18307 0.88255 0.95272 0.94741 1.22445 0.97805 0.98729 0.99337 1.23077 0.88719 0.97699 0.95639 1.67718 1.39529 1.08118 1.06231 1.22980 0.93066 0.93210 0.95808 1.22379 0.95088 1.01920 1.00397 0.89568 0.91046 0.92283 0.75210 0.83916 0.79332 0.79743 0.85346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -42.73 11.89 21.68 0.26 -42.47 15 2 C 0.00 -0.02 5.50 85.00 0.47 0.45 15 3 Si 1.02 35.10 29.55 68.60 2.03 37.13 15 4 H -0.25 -8.07 7.11 99.48 0.71 -7.36 15 5 H -0.27 -8.93 7.11 99.48 0.71 -8.22 15 6 H -0.24 -7.70 7.11 99.48 0.71 -6.99 15 7 C -0.32 -16.17 9.61 84.05 0.81 -15.36 15 8 H 0.14 6.49 6.36 -2.91 -0.02 6.47 15 9 N -0.14 -7.95 3.79 -179.72 -0.68 -8.64 15 10 N -0.15 -9.47 11.71 37.02 0.43 -9.04 15 11 N -0.35 -20.08 12.28 -48.35 -0.59 -20.68 15 12 C -0.06 -2.90 6.75 41.94 0.28 -2.62 15 13 C 0.18 6.62 6.64 71.24 0.47 7.09 15 14 O -0.58 -18.85 12.46 -148.98 -1.86 -20.71 15 15 C -0.08 -3.86 6.53 40.35 0.26 -3.60 15 16 C 0.04 1.75 5.36 -19.88 -0.11 1.64 15 17 C -0.16 -5.28 8.83 22.62 0.20 -5.08 15 18 C 0.10 2.81 11.17 84.59 0.94 3.76 15 19 N -0.51 -14.53 10.35 -196.21 -2.03 -16.56 15 20 C 0.11 2.97 11.17 84.59 0.94 3.91 15 21 C -0.18 -6.09 8.58 22.62 0.19 -5.90 15 22 H 0.29 14.21 8.30 -92.71 -0.77 13.44 15 23 H 0.07 2.20 7.48 -2.39 -0.02 2.18 15 24 H 0.06 1.99 8.14 -2.38 -0.02 1.97 15 25 H 0.40 7.38 9.12 -74.06 -0.68 6.71 15 26 H 0.14 4.60 6.54 -2.91 -0.02 4.58 15 27 H 0.19 3.53 8.06 -2.91 -0.02 3.51 15 28 H 0.19 3.82 8.06 -2.91 -0.02 3.79 15 29 H 0.13 4.53 7.41 -2.91 -0.02 4.50 15 Total: -1.00 -74.64 262.97 2.56 -72.08 By element: Atomic # 1 Polarization: 24.05 SS G_CDS: 0.53 Total: 24.58 kcal Atomic # 6 Polarization: -20.17 SS G_CDS: 4.47 Total: -15.69 kcal Atomic # 7 Polarization: -94.77 SS G_CDS: -2.61 Total: -97.39 kcal Atomic # 8 Polarization: -18.85 SS G_CDS: -1.86 Total: -20.71 kcal Atomic # 14 Polarization: 35.10 SS G_CDS: 2.03 Total: 37.13 kcal Total: -74.64 2.56 -72.08 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062295786.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.750 kcal (2) G-P(sol) polarization free energy of solvation -74.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds