Wall clock time and date at job start Mon Mar 30 2020 03:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47113 * 2 1 4 4 C 1.36934 * 120.00085 * 265.01696 * 3 2 1 5 5 H 1.08010 * 119.99751 * 145.96025 * 4 3 2 6 6 C 1.38807 * 120.00021 * 325.95655 * 4 3 2 7 7 N 1.31618 * 119.99828 * 338.07715 * 6 4 3 8 8 Si 1.86799 * 120.00096 * 158.06894 * 6 4 3 9 9 H 1.48507 * 109.47119 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.47038 * 120.00315 * 8 6 4 11 11 H 1.48493 * 109.47617 * 240.00231 * 8 6 4 12 12 C 1.46501 * 119.99904 * 85.01130 * 3 2 1 13 13 N 1.46503 * 109.46948 * 90.00245 * 12 3 2 14 14 C 1.44541 * 120.61715 * 270.00160 * 13 12 3 15 15 C 1.53426 * 111.71933 * 180.02562 * 14 13 12 16 16 S 1.82070 * 103.93614 * 359.78677 * 15 14 13 17 17 C 1.33005 * 120.61720 * 90.02636 * 13 12 3 18 18 S 1.71202 * 125.19687 * 359.93648 * 17 13 12 19 19 H 1.09002 * 109.46873 * 60.00271 * 1 2 3 20 20 H 1.08999 * 109.47430 * 179.97438 * 1 2 3 21 21 H 1.08996 * 109.47669 * 300.00129 * 1 2 3 22 22 H 1.08996 * 109.47669 * 239.99871 * 2 1 3 23 23 H 1.09002 * 109.46873 * 119.99729 * 2 1 3 24 24 H 0.97004 * 119.99631 * 180.02562 * 7 6 4 25 25 H 1.09000 * 109.47387 * 330.00407 * 12 3 2 26 26 H 1.09002 * 109.47494 * 210.00131 * 12 3 2 27 27 H 1.09003 * 109.04306 * 300.61828 * 14 13 12 28 28 H 1.09008 * 109.03728 * 59.54523 * 14 13 12 29 29 H 1.08999 * 110.52982 * 118.61604 * 15 14 13 30 30 H 1.09000 * 110.53378 * 241.24231 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3436 1.9924 -1.1814 5 1 2.1722 3.0514 -1.3067 6 6 2.8939 1.2510 -2.2179 7 7 3.4968 0.1093 -1.9624 8 14 2.7783 1.8735 -3.9753 9 1 2.0574 3.1717 -3.9943 10 1 4.1451 2.0587 -4.5257 11 1 2.0412 0.8854 -4.8031 12 6 2.1584 2.1086 1.2639 13 7 3.5025 1.8924 1.8053 14 6 3.7678 0.7861 2.6969 15 6 5.2366 0.7531 3.1393 16 16 5.9824 2.1806 2.2903 17 6 4.5011 2.7108 1.4859 18 16 4.3726 4.0663 0.4482 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3634 0.5138 0.8899 22 1 1.8934 -0.5138 -0.8899 23 1 1.8933 -0.5138 0.8900 24 1 3.8817 -0.4086 -2.6867 25 1 1.4173 1.7458 1.9761 26 1 2.0040 3.1734 1.0895 27 1 3.1331 0.8794 3.5781 28 1 3.5310 -0.1471 2.1858 29 1 5.3126 0.8648 4.2209 30 1 5.7122 -0.1733 2.8173 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068937755.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:56 Heat of formation + Delta-G solvation = 49.506359 kcal Electronic energy + Delta-G solvation = -14548.462420 eV Core-core repulsion = 12211.459942 eV Total energy + Delta-G solvation = -2337.002478 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 246.056 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.81973 -35.61362 -31.75898 -31.31422 -29.37889 -26.93945 -24.78029 -23.67398 -21.46430 -20.45906 -18.16732 -16.76784 -16.32391 -16.05675 -14.83316 -14.45004 -14.07054 -13.77831 -13.41439 -12.89214 -12.67696 -12.25840 -12.11722 -11.58112 -11.30838 -11.13367 -10.86104 -10.77082 -10.64187 -10.31489 -10.14543 -10.07883 -9.80949 -8.67706 -7.93285 -7.15690 -7.05768 -6.56380 -5.95014 -3.45147 1.37588 1.54658 2.08631 2.90100 3.32642 3.44735 3.48094 3.51043 4.35378 4.42682 4.68327 5.18552 5.29436 5.32569 5.36478 5.57883 5.61590 6.02594 6.21470 6.30267 6.37825 6.55761 6.88541 7.02103 7.16966 7.48065 7.84509 8.30562 9.01863 9.57547 10.07035 11.07237 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.022183 B = 0.010515 C = 0.008679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.914810 B = 2662.314318 C = 3225.387239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.128 3.872 3 N -0.548 5.548 4 C -0.244 4.244 5 H 0.084 0.916 6 C 0.016 3.984 7 N -0.887 5.887 8 Si 0.904 3.096 9 H -0.272 1.272 10 H -0.287 1.287 11 H -0.289 1.289 12 C 0.316 3.684 13 N -0.522 5.522 14 C 0.079 3.921 15 C -0.119 4.119 16 S -0.111 6.111 17 C 0.349 3.651 18 S -0.514 6.514 19 H 0.054 0.946 20 H 0.039 0.961 21 H 0.033 0.967 22 H 0.105 0.895 23 H 0.019 0.981 24 H 0.256 0.744 25 H 0.067 0.933 26 H 0.101 0.899 27 H 0.087 0.913 28 H 0.096 0.904 29 H 0.110 0.890 30 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.254 -3.156 11.036 11.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.003 3.997 3 N -0.265 5.265 4 C -0.375 4.375 5 H 0.102 0.898 6 C -0.184 4.184 7 N -0.529 5.529 8 Si 0.733 3.267 9 H -0.196 1.196 10 H -0.214 1.214 11 H -0.216 1.216 12 C 0.107 3.893 13 N -0.230 5.230 14 C -0.050 4.050 15 C -0.271 4.271 16 S 0.117 5.883 17 C -0.019 4.019 18 S -0.383 6.383 19 H 0.073 0.927 20 H 0.058 0.942 21 H 0.053 0.947 22 H 0.123 0.877 23 H 0.037 0.963 24 H 0.065 0.935 25 H 0.085 0.915 26 H 0.119 0.881 27 H 0.105 0.895 28 H 0.114 0.886 29 H 0.129 0.871 30 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -0.371 -2.151 10.274 10.503 hybrid contribution -0.865 -1.279 -0.327 1.579 sum -1.236 -3.430 9.948 10.595 Atomic orbital electron populations 1.22260 0.99717 0.99246 1.00866 1.21185 0.90517 0.85795 1.02189 1.44972 1.68317 1.12077 1.01150 1.19445 1.35248 0.94881 0.87877 0.89833 1.25154 0.96050 0.97420 0.99818 1.69971 1.35808 1.15702 1.31458 0.86181 0.77711 0.78599 0.84194 1.19605 1.21413 1.21592 1.22624 0.79325 1.00148 0.87192 1.50329 1.12831 1.21360 1.38523 1.21913 0.95080 0.92998 0.94974 1.24346 0.97039 1.01544 1.04147 1.87059 1.16712 1.30807 1.53763 1.27679 0.90159 0.93229 0.90842 1.92652 1.89402 1.17909 1.38300 0.92655 0.94215 0.94743 0.87701 0.96265 0.93463 0.91460 0.88128 0.89487 0.88628 0.87118 0.87002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.86 10.24 37.16 0.38 -2.48 16 2 C 0.13 2.68 5.96 -4.04 -0.02 2.66 16 3 N -0.55 -12.41 2.69 -176.95 -0.48 -12.89 16 4 C -0.24 -6.41 8.55 -15.06 -0.13 -6.54 16 5 H 0.08 2.33 7.89 -52.48 -0.41 1.92 16 6 C 0.02 0.44 4.93 -17.43 -0.09 0.36 16 7 N -0.89 -24.59 11.32 55.49 0.63 -23.96 16 8 Si 0.90 22.11 29.61 -169.99 -5.03 17.08 16 9 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 C 0.32 6.11 5.94 -63.75 -0.38 5.74 16 13 N -0.52 -9.64 3.02 -179.30 -0.54 -10.18 16 14 C 0.08 1.08 6.80 -4.87 -0.03 1.05 16 15 C -0.12 -1.44 7.42 37.38 0.28 -1.17 16 16 S -0.11 -1.90 23.24 -107.50 -2.50 -4.40 16 17 C 0.35 7.30 7.47 53.27 0.40 7.70 16 18 S -0.51 -12.59 28.59 -107.50 -3.07 -15.67 16 19 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 20 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 21 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 22 H 0.11 2.58 5.33 -51.93 -0.28 2.30 16 23 H 0.02 0.37 7.05 -51.93 -0.37 0.00 16 24 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 25 H 0.07 1.08 8.01 -51.93 -0.42 0.66 16 26 H 0.10 2.11 6.90 -51.93 -0.36 1.75 16 27 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.10 1.40 7.09 -51.92 -0.37 1.03 16 29 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.11 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 276.53 15.07 4.17 4.17 Total: -1.00 -30.80 276.53 -10.29 -41.09 By element: Atomic # 1 Polarization: 1.33 SS G_CDS: -3.87 Total: -2.54 kcal Atomic # 6 Polarization: 6.90 SS G_CDS: 0.41 Total: 7.31 kcal Atomic # 7 Polarization: -46.64 SS G_CDS: -0.39 Total: -47.03 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.03 Total: 17.08 kcal Atomic # 16 Polarization: -14.50 SS G_CDS: -5.57 Total: -20.07 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -30.80 -10.29 -41.09 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068937755.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.594 kcal (2) G-P(sol) polarization free energy of solvation -30.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds