Wall clock time and date at job start Mon Mar 30 2020 03:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47113 * 2 1 4 4 C 1.36934 * 120.00085 * 265.01696 * 3 2 1 5 5 H 1.08010 * 119.99751 * 145.96025 * 4 3 2 6 6 C 1.38807 * 120.00021 * 325.95655 * 4 3 2 7 7 N 1.31618 * 119.99828 * 338.07715 * 6 4 3 8 8 Si 1.86799 * 120.00096 * 158.06894 * 6 4 3 9 9 H 1.48507 * 109.47119 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.47038 * 120.00315 * 8 6 4 11 11 H 1.48493 * 109.47617 * 240.00231 * 8 6 4 12 12 C 1.46501 * 119.99904 * 85.01130 * 3 2 1 13 13 N 1.46503 * 109.46948 * 90.00245 * 12 3 2 14 14 C 1.44541 * 120.61715 * 270.00160 * 13 12 3 15 15 C 1.53426 * 111.71933 * 180.02562 * 14 13 12 16 16 S 1.82070 * 103.93614 * 359.78677 * 15 14 13 17 17 C 1.33005 * 120.61720 * 90.02636 * 13 12 3 18 18 S 1.71202 * 125.19687 * 359.93648 * 17 13 12 19 19 H 1.09002 * 109.46873 * 60.00271 * 1 2 3 20 20 H 1.08999 * 109.47430 * 179.97438 * 1 2 3 21 21 H 1.08996 * 109.47669 * 300.00129 * 1 2 3 22 22 H 1.08996 * 109.47669 * 239.99871 * 2 1 3 23 23 H 1.09002 * 109.46873 * 119.99729 * 2 1 3 24 24 H 0.97004 * 119.99631 * 180.02562 * 7 6 4 25 25 H 1.09000 * 109.47387 * 330.00407 * 12 3 2 26 26 H 1.09002 * 109.47494 * 210.00131 * 12 3 2 27 27 H 1.09003 * 109.04306 * 300.61828 * 14 13 12 28 28 H 1.09008 * 109.03728 * 59.54523 * 14 13 12 29 29 H 1.08999 * 110.52982 * 118.61604 * 15 14 13 30 30 H 1.09000 * 110.53378 * 241.24231 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3436 1.9924 -1.1814 5 1 2.1722 3.0514 -1.3067 6 6 2.8939 1.2510 -2.2179 7 7 3.4968 0.1093 -1.9624 8 14 2.7783 1.8735 -3.9753 9 1 2.0574 3.1717 -3.9943 10 1 4.1451 2.0587 -4.5257 11 1 2.0412 0.8854 -4.8031 12 6 2.1584 2.1086 1.2639 13 7 3.5025 1.8924 1.8053 14 6 3.7678 0.7861 2.6969 15 6 5.2366 0.7531 3.1393 16 16 5.9824 2.1806 2.2903 17 6 4.5011 2.7108 1.4859 18 16 4.3726 4.0663 0.4482 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3634 0.5138 0.8899 22 1 1.8934 -0.5138 -0.8899 23 1 1.8933 -0.5138 0.8900 24 1 3.8817 -0.4086 -2.6867 25 1 1.4173 1.7458 1.9761 26 1 2.0040 3.1734 1.0895 27 1 3.1331 0.8794 3.5781 28 1 3.5310 -0.1471 2.1858 29 1 5.3126 0.8648 4.2209 30 1 5.7122 -0.1733 2.8173 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068937755.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:56 Heat of formation + Delta-G solvation = 30.558913 kcal Electronic energy + Delta-G solvation = -14549.284043 eV Core-core repulsion = 12211.459942 eV Total energy + Delta-G solvation = -2337.824101 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 246.056 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.34426 -37.31183 -33.54851 -32.68287 -30.93357 -28.63308 -26.32912 -25.28200 -22.87361 -22.12479 -19.71636 -18.56464 -17.90102 -17.41771 -16.66128 -15.89737 -15.71850 -15.48950 -14.86215 -14.30446 -14.02803 -13.69884 -13.60053 -13.17930 -12.85560 -12.77731 -12.60669 -12.47859 -12.29846 -12.03766 -11.92824 -11.71370 -11.49024 -10.61642 -9.32237 -8.99287 -8.82813 -8.43903 -7.93531 -5.45944 -0.24109 0.06150 0.81816 1.29237 1.37117 1.44107 1.52513 1.93371 2.48046 3.22372 3.25682 3.50325 3.81399 4.08529 4.32398 4.47189 4.49617 4.63254 4.66069 4.85983 4.92105 5.11294 5.37044 5.51398 5.63295 5.74860 5.82569 6.41391 7.10123 7.68391 8.13970 9.04110 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.022183 B = 0.010515 C = 0.008679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.914810 B = 2662.314318 C = 3225.387239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.130 3.870 3 N -0.566 5.566 4 C -0.233 4.233 5 H 0.055 0.945 6 C -0.025 4.025 7 N -0.909 5.909 8 Si 0.941 3.059 9 H -0.276 1.276 10 H -0.302 1.302 11 H -0.280 1.280 12 C 0.321 3.679 13 N -0.514 5.514 14 C 0.067 3.933 15 C -0.104 4.104 16 S -0.100 6.100 17 C 0.353 3.647 18 S -0.638 6.638 19 H 0.031 0.969 20 H 0.062 0.938 21 H 0.056 0.944 22 H 0.068 0.932 23 H 0.041 0.959 24 H 0.250 0.750 25 H 0.116 0.884 26 H 0.077 0.923 27 H 0.139 0.861 28 H 0.097 0.903 29 H 0.160 0.840 30 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.660 -5.418 14.388 15.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.005 3.995 3 N -0.284 5.284 4 C -0.364 4.364 5 H 0.073 0.927 6 C -0.222 4.222 7 N -0.553 5.553 8 Si 0.770 3.230 9 H -0.201 1.201 10 H -0.229 1.229 11 H -0.206 1.206 12 C 0.111 3.889 13 N -0.218 5.218 14 C -0.059 4.059 15 C -0.254 4.254 16 S 0.130 5.870 17 C -0.020 4.020 18 S -0.508 6.508 19 H 0.050 0.950 20 H 0.081 0.919 21 H 0.075 0.925 22 H 0.086 0.914 23 H 0.060 0.940 24 H 0.059 0.941 25 H 0.134 0.866 26 H 0.095 0.905 27 H 0.157 0.843 28 H 0.115 0.885 29 H 0.178 0.822 30 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -0.788 -4.443 13.667 14.393 hybrid contribution -0.706 -0.706 -1.054 1.452 sum -1.494 -5.150 12.612 13.705 Atomic orbital electron populations 1.22112 0.97253 1.00739 1.00793 1.21133 0.92384 0.84512 1.01441 1.44917 1.69594 1.12804 1.01117 1.19175 1.33838 0.93550 0.89799 0.92686 1.25499 0.97030 0.98061 1.01652 1.70043 1.37530 1.16455 1.31310 0.85617 0.76712 0.78159 0.82468 1.20096 1.22946 1.20616 1.22421 0.80127 0.98966 0.87337 1.50073 1.12161 1.21633 1.37929 1.22337 0.97333 0.90591 0.95685 1.24718 0.94910 0.99410 1.06382 1.87022 1.13938 1.33042 1.53039 1.27499 0.92369 0.92354 0.89773 1.92905 1.91479 1.22691 1.43708 0.94968 0.91916 0.92523 0.91362 0.94028 0.94122 0.86640 0.90519 0.84331 0.88472 0.82167 0.85079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.89 10.24 71.98 0.74 -4.16 16 2 C 0.13 5.16 5.96 86.38 0.51 5.68 16 3 N -0.57 -25.10 2.69 -713.74 -1.92 -27.02 16 4 C -0.23 -12.51 8.55 84.03 0.72 -11.79 16 5 H 0.06 3.25 7.89 -2.91 -0.02 3.22 16 6 C -0.02 -1.37 4.93 84.86 0.42 -0.96 16 7 N -0.91 -51.20 11.32 21.65 0.25 -50.96 16 8 Si 0.94 46.98 29.61 68.60 2.03 49.01 16 9 H -0.28 -13.78 7.11 99.48 0.71 -13.08 16 10 H -0.30 -15.63 7.11 99.48 0.71 -14.93 16 11 H -0.28 -13.37 7.11 99.48 0.71 -12.67 16 12 C 0.32 11.73 5.94 170.96 1.02 12.75 16 13 N -0.51 -17.46 3.02 -721.19 -2.18 -19.64 16 14 C 0.07 1.44 6.80 86.89 0.59 2.03 16 15 C -0.10 -1.86 7.42 72.13 0.54 -1.32 16 16 S -0.10 -3.11 23.24 -56.49 -1.31 -4.42 16 17 C 0.35 14.42 7.47 130.07 0.97 15.39 16 18 S -0.64 -32.78 28.59 -56.49 -1.62 -34.39 16 19 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 20 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 21 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 22 H 0.07 3.32 5.33 -2.39 -0.01 3.30 16 23 H 0.04 1.43 7.05 -2.39 -0.02 1.42 16 24 H 0.25 13.83 8.31 -92.71 -0.77 13.05 16 25 H 0.12 3.15 8.01 -2.39 -0.02 3.13 16 26 H 0.08 3.23 6.90 -2.39 -0.02 3.21 16 27 H 0.14 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.10 2.25 7.09 -2.38 -0.02 2.24 16 29 H 0.16 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.13 2.04 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -73.06 276.53 1.88 -71.18 By element: Atomic # 1 Polarization: -2.51 SS G_CDS: 1.13 Total: -1.39 kcal Atomic # 6 Polarization: 12.12 SS G_CDS: 5.50 Total: 17.62 kcal Atomic # 7 Polarization: -93.77 SS G_CDS: -3.85 Total: -97.62 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 2.03 Total: 49.01 kcal Atomic # 16 Polarization: -35.89 SS G_CDS: -2.93 Total: -38.82 kcal Total: -73.06 1.88 -71.18 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068937755.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.742 kcal (2) G-P(sol) polarization free energy of solvation -73.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds