Wall clock time and date at job start Mon Mar 30 2020 03:52:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13608 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46502 * 109.46849 * 128.30043 * 3 2 1 5 5 C 1.37177 * 120.00317 * 264.25292 * 4 3 2 6 6 H 1.07994 * 120.00081 * 200.64471 * 5 4 3 7 7 C 1.38897 * 119.99923 * 20.64035 * 5 4 3 8 8 N 1.31462 * 119.99749 * 11.27729 * 7 5 4 9 9 Si 1.86792 * 120.00143 * 191.26842 * 7 5 4 10 10 H 1.48507 * 109.46830 * 60.00411 * 9 7 5 11 11 H 1.48503 * 109.47225 * 180.02562 * 9 7 5 12 12 H 1.48490 * 109.47408 * 300.00557 * 9 7 5 13 13 C 1.34776 * 120.00078 * 84.25305 * 4 3 2 14 14 O 1.21513 * 120.00361 * 179.97438 * 13 4 3 15 15 O 1.34706 * 119.99753 * 0.02562 * 13 4 3 16 16 C 1.35924 * 116.99687 * 185.04421 * 15 13 4 17 17 C 1.38732 * 120.05237 * 75.34021 * 16 15 13 18 18 C 1.38151 * 119.93841 * 179.97438 * 17 16 15 19 19 C 1.38266 * 120.05626 * 359.97438 * 18 17 16 20 20 C 1.38264 * 120.11049 * 0.02562 * 19 18 17 21 21 C 1.38143 * 120.05922 * 359.97438 * 20 19 18 22 22 H 1.09003 * 109.47300 * 8.30673 * 3 2 1 23 23 H 1.08994 * 109.47061 * 248.29918 * 3 2 1 24 24 H 0.97004 * 119.99831 * 180.02562 * 8 7 5 25 25 H 1.07992 * 120.03224 * 359.69933 * 17 16 15 26 26 H 1.08000 * 119.97059 * 179.97438 * 18 17 16 27 27 H 1.08000 * 119.94491 * 179.97438 * 19 18 17 28 28 H 1.08006 * 119.96955 * 179.97438 * 20 19 18 29 29 H 1.07999 * 120.02588 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 7 3.0960 0.8570 -1.0840 5 6 3.4370 0.3058 -2.2930 6 1 4.0915 0.8409 -2.9650 7 6 2.9405 -0.9405 -2.6528 8 7 1.9782 -1.4931 -1.9480 9 14 3.6401 -1.8313 -4.1381 10 1 5.0919 -2.0686 -3.9345 11 1 2.9445 -3.1322 -4.3081 12 1 3.4400 -1.0010 -5.3529 13 6 3.2098 2.1863 -0.8934 14 8 3.6149 2.8965 -1.7923 15 8 2.8754 2.7275 0.2940 16 6 2.9128 4.0831 0.3867 17 6 1.9105 4.8471 -0.1933 18 6 1.9506 6.2246 -0.0972 19 6 2.9882 6.8419 0.5767 20 6 3.9884 6.0826 1.1554 21 6 3.9529 4.7048 1.0622 22 1 2.9719 -1.0161 -0.1485 23 1 2.9712 0.3808 0.9548 24 1 1.6317 -2.3637 -2.1991 25 1 1.1020 4.3656 -0.7231 26 1 1.1708 6.8199 -0.5488 27 1 3.0180 7.9190 0.6503 28 1 4.7980 6.5672 1.6809 29 1 4.7346 4.1123 1.5141 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070266656.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:19 Heat of formation + Delta-G solvation = 1.304708 kcal Electronic energy + Delta-G solvation = -17149.885448 eV Core-core repulsion = 14232.595966 eV Total energy + Delta-G solvation = -2917.289481 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.45150 -38.42734 -36.67098 -35.43233 -34.30698 -31.90613 -30.79257 -29.74915 -27.51726 -25.27483 -22.72610 -22.47830 -20.43384 -18.13997 -17.66835 -17.16099 -16.44388 -15.95762 -15.61309 -14.88511 -14.28688 -13.93129 -13.75688 -13.27111 -13.18261 -12.90200 -12.30689 -12.06405 -11.70932 -11.46123 -11.40588 -11.29529 -11.16775 -10.56245 -10.49713 -10.44961 -10.19299 -9.51434 -9.35921 -8.79182 -8.41951 -8.19959 -6.54390 -4.16251 1.36385 1.54487 3.01778 3.10999 3.18906 3.29089 3.69779 3.85768 4.05193 4.11136 4.25642 4.86692 5.04205 5.08339 5.14612 5.26655 5.39198 5.54879 5.70192 5.86095 6.14512 6.21031 6.48541 6.58367 6.62209 6.67901 6.84844 7.35607 7.44879 7.82834 8.14447 8.80970 8.86314 9.03923 9.65461 10.50994 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.032551 B = 0.006612 C = 0.005998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.994952 B = 4233.991580 C = 4667.160143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C 0.253 3.747 3 C 0.228 3.772 4 N -0.422 5.422 5 C -0.303 4.303 6 H 0.110 0.890 7 C 0.031 3.969 8 N -0.886 5.886 9 Si 0.943 3.057 10 H -0.270 1.270 11 H -0.283 1.283 12 H -0.272 1.272 13 C 0.593 3.407 14 O -0.579 6.579 15 O -0.322 6.322 16 C 0.129 3.871 17 C -0.122 4.122 18 C -0.108 4.108 19 C -0.131 4.131 20 C -0.110 4.110 21 C -0.124 4.124 22 H 0.137 0.863 23 H 0.086 0.914 24 H 0.276 0.724 25 H 0.125 0.875 26 H 0.124 0.876 27 H 0.122 0.878 28 H 0.126 0.874 29 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.197 7.771 6.270 10.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.160 5.160 2 C -0.065 4.065 3 C 0.102 3.898 4 N -0.150 5.150 5 C -0.429 4.429 6 H 0.128 0.872 7 C -0.172 4.172 8 N -0.525 5.525 9 Si 0.768 3.232 10 H -0.195 1.195 11 H -0.208 1.208 12 H -0.197 1.197 13 C 0.348 3.652 14 O -0.470 6.470 15 O -0.236 6.236 16 C 0.086 3.914 17 C -0.141 4.141 18 C -0.126 4.126 19 C -0.149 4.149 20 C -0.128 4.128 21 C -0.143 4.143 22 H 0.154 0.846 23 H 0.104 0.896 24 H 0.087 0.913 25 H 0.143 0.857 26 H 0.142 0.858 27 H 0.140 0.860 28 H 0.144 0.856 29 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 2.559 7.812 5.991 10.172 hybrid contribution 0.508 -0.586 -0.852 1.152 sum 3.068 7.226 5.139 9.383 Atomic orbital electron populations 1.80870 1.13658 1.10650 1.10775 1.29238 0.95337 0.91122 0.90782 1.18809 0.81639 0.99690 0.89709 1.42479 1.59488 0.99833 1.13165 1.19702 1.27547 1.01230 0.94449 0.87232 1.25374 0.94946 0.97616 0.99229 1.69787 1.24143 1.18268 1.40319 0.85729 0.78855 0.78148 0.80427 1.19537 1.20807 1.19740 1.18534 0.82781 0.83881 0.79980 1.90868 1.53889 1.59922 1.42274 1.84222 1.82824 1.19398 1.37157 1.18304 0.94351 0.80789 0.97952 1.21416 0.99140 0.94319 0.99218 1.20972 0.98719 0.93750 0.99124 1.21114 0.95034 0.99743 0.98981 1.20943 0.98877 0.92939 1.00055 1.21200 0.96982 0.94945 1.01161 0.84553 0.89641 0.91316 0.85685 0.85757 0.86007 0.85639 0.85316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -11.89 18.54 42.16 0.78 -11.11 15 2 C 0.25 5.90 13.58 -20.76 -0.28 5.62 15 3 C 0.23 4.79 5.07 -6.83 -0.03 4.75 15 4 N -0.42 -10.21 2.60 -123.36 -0.32 -10.53 15 5 C -0.30 -7.76 9.33 -14.92 -0.14 -7.90 15 6 H 0.11 2.90 7.37 -52.49 -0.39 2.51 15 7 C 0.03 0.76 5.10 -17.47 -0.09 0.67 15 8 N -0.89 -22.04 9.03 55.49 0.50 -21.54 15 9 Si 0.94 19.45 29.57 -169.99 -5.03 14.42 15 10 H -0.27 -5.40 7.11 56.52 0.40 -5.00 15 11 H -0.28 -5.80 7.11 56.52 0.40 -5.40 15 12 H -0.27 -5.75 7.11 56.52 0.40 -5.35 15 13 C 0.59 14.39 8.13 54.05 0.44 14.83 15 14 O -0.58 -15.58 15.66 -19.28 -0.30 -15.88 15 15 O -0.32 -6.84 8.96 -24.78 -0.22 -7.06 15 16 C 0.13 2.45 5.10 -39.22 -0.20 2.25 15 17 C -0.12 -2.18 9.67 -39.43 -0.38 -2.56 15 18 C -0.11 -1.53 10.04 -39.60 -0.40 -1.93 15 19 C -0.13 -1.64 10.04 -39.56 -0.40 -2.04 15 20 C -0.11 -1.43 10.04 -39.61 -0.40 -1.82 15 21 C -0.12 -1.95 9.99 -39.44 -0.39 -2.35 15 22 H 0.14 2.83 6.35 -51.93 -0.33 2.50 15 23 H 0.09 1.48 7.57 -51.93 -0.39 1.09 15 24 H 0.28 6.67 8.31 -40.82 -0.34 6.33 15 25 H 0.13 2.32 8.06 -52.49 -0.42 1.89 15 26 H 0.12 1.43 8.06 -52.49 -0.42 1.01 15 27 H 0.12 1.14 8.06 -52.49 -0.42 0.72 15 28 H 0.13 1.22 8.06 -52.48 -0.42 0.80 15 29 H 0.13 1.80 8.06 -52.49 -0.42 1.38 15 LS Contribution 271.65 15.07 4.09 4.09 Total: -1.00 -30.49 271.65 -5.13 -35.61 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: -2.36 Total: 2.47 kcal Atomic # 6 Polarization: 11.79 SS G_CDS: -2.27 Total: 9.52 kcal Atomic # 7 Polarization: -44.14 SS G_CDS: 0.96 Total: -43.17 kcal Atomic # 8 Polarization: -22.41 SS G_CDS: -0.52 Total: -22.94 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -5.03 Total: 14.42 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -30.49 -5.13 -35.61 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070266656.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.917 kcal (2) G-P(sol) polarization free energy of solvation -30.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds