Wall clock time and date at job start Mon Mar 30 2020 03:52:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13608 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46502 * 109.46849 * 128.30043 * 3 2 1 5 5 C 1.37177 * 120.00317 * 264.25292 * 4 3 2 6 6 H 1.07994 * 120.00081 * 200.64471 * 5 4 3 7 7 C 1.38897 * 119.99923 * 20.64035 * 5 4 3 8 8 N 1.31462 * 119.99749 * 11.27729 * 7 5 4 9 9 Si 1.86792 * 120.00143 * 191.26842 * 7 5 4 10 10 H 1.48507 * 109.46830 * 60.00411 * 9 7 5 11 11 H 1.48503 * 109.47225 * 180.02562 * 9 7 5 12 12 H 1.48490 * 109.47408 * 300.00557 * 9 7 5 13 13 C 1.34776 * 120.00078 * 84.25305 * 4 3 2 14 14 O 1.21513 * 120.00361 * 179.97438 * 13 4 3 15 15 O 1.34706 * 119.99753 * 0.02562 * 13 4 3 16 16 C 1.35924 * 116.99687 * 185.04421 * 15 13 4 17 17 C 1.38732 * 120.05237 * 75.34021 * 16 15 13 18 18 C 1.38151 * 119.93841 * 179.97438 * 17 16 15 19 19 C 1.38266 * 120.05626 * 359.97438 * 18 17 16 20 20 C 1.38264 * 120.11049 * 0.02562 * 19 18 17 21 21 C 1.38143 * 120.05922 * 359.97438 * 20 19 18 22 22 H 1.09003 * 109.47300 * 8.30673 * 3 2 1 23 23 H 1.08994 * 109.47061 * 248.29918 * 3 2 1 24 24 H 0.97004 * 119.99831 * 180.02562 * 8 7 5 25 25 H 1.07992 * 120.03224 * 359.69933 * 17 16 15 26 26 H 1.08000 * 119.97059 * 179.97438 * 18 17 16 27 27 H 1.08000 * 119.94491 * 179.97438 * 19 18 17 28 28 H 1.08006 * 119.96955 * 179.97438 * 20 19 18 29 29 H 1.07999 * 120.02588 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 7 3.0960 0.8570 -1.0840 5 6 3.4370 0.3058 -2.2930 6 1 4.0915 0.8409 -2.9650 7 6 2.9405 -0.9405 -2.6528 8 7 1.9782 -1.4931 -1.9480 9 14 3.6401 -1.8313 -4.1381 10 1 5.0919 -2.0686 -3.9345 11 1 2.9445 -3.1322 -4.3081 12 1 3.4400 -1.0010 -5.3529 13 6 3.2098 2.1863 -0.8934 14 8 3.6149 2.8965 -1.7923 15 8 2.8754 2.7275 0.2940 16 6 2.9128 4.0831 0.3867 17 6 1.9105 4.8471 -0.1933 18 6 1.9506 6.2246 -0.0972 19 6 2.9882 6.8419 0.5767 20 6 3.9884 6.0826 1.1554 21 6 3.9529 4.7048 1.0622 22 1 2.9719 -1.0161 -0.1485 23 1 2.9712 0.3808 0.9548 24 1 1.6317 -2.3637 -2.1991 25 1 1.1020 4.3656 -0.7231 26 1 1.1708 6.8199 -0.5488 27 1 3.0180 7.9190 0.6503 28 1 4.7980 6.5672 1.6809 29 1 4.7346 4.1123 1.5141 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070266656.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:19 Heat of formation + Delta-G solvation = -16.312039 kcal Electronic energy + Delta-G solvation = -17150.649367 eV Core-core repulsion = 14232.595966 eV Total energy + Delta-G solvation = -2918.053401 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.06015 -39.87408 -38.27427 -37.27019 -36.22438 -33.79607 -31.94698 -31.00791 -29.32513 -27.09801 -24.20087 -23.66393 -21.95594 -19.98136 -19.45413 -18.67062 -18.20822 -17.26681 -17.13331 -16.60895 -15.78732 -15.54020 -15.22418 -14.84830 -14.65851 -14.40108 -13.95765 -13.53660 -13.49522 -13.23233 -12.93115 -12.80422 -12.54477 -12.41770 -12.22669 -12.11838 -11.64175 -11.39143 -11.22348 -10.10109 -9.95108 -9.67434 -8.42881 -6.12267 0.09463 0.38793 1.35952 1.44800 1.53608 1.65336 1.89907 2.15896 2.23800 2.41564 2.87216 2.97994 3.48700 3.62909 3.94012 3.98267 4.22255 4.43789 4.48727 4.57092 4.64488 4.88267 5.03483 5.35435 5.40436 5.45282 5.50366 5.57920 5.94820 6.05946 6.27896 6.94173 6.97125 7.14646 7.80126 8.60361 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.032551 B = 0.006612 C = 0.005998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.994952 B = 4233.991580 C = 4667.160143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C 0.263 3.737 3 C 0.231 3.769 4 N -0.431 5.431 5 C -0.332 4.332 6 H 0.092 0.908 7 C 0.005 3.995 8 N -0.900 5.900 9 Si 1.004 2.996 10 H -0.257 1.257 11 H -0.277 1.277 12 H -0.281 1.281 13 C 0.590 3.410 14 O -0.616 6.616 15 O -0.318 6.318 16 C 0.077 3.923 17 C -0.151 4.151 18 C -0.109 4.109 19 C -0.116 4.116 20 C -0.101 4.101 21 C -0.132 4.132 22 H 0.141 0.859 23 H 0.125 0.875 24 H 0.278 0.722 25 H 0.100 0.900 26 H 0.151 0.849 27 H 0.167 0.833 28 H 0.168 0.832 29 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.322 9.099 7.022 12.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.192 5.192 2 C -0.055 4.055 3 C 0.105 3.895 4 N -0.159 5.159 5 C -0.457 4.457 6 H 0.110 0.890 7 C -0.197 4.197 8 N -0.539 5.539 9 Si 0.827 3.173 10 H -0.181 1.181 11 H -0.201 1.201 12 H -0.207 1.207 13 C 0.346 3.654 14 O -0.509 6.509 15 O -0.231 6.231 16 C 0.035 3.965 17 C -0.170 4.170 18 C -0.127 4.127 19 C -0.133 4.133 20 C -0.119 4.119 21 C -0.150 4.150 22 H 0.158 0.842 23 H 0.142 0.858 24 H 0.088 0.912 25 H 0.118 0.882 26 H 0.168 0.832 27 H 0.184 0.816 28 H 0.186 0.814 29 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 3.676 9.140 6.787 11.963 hybrid contribution 0.147 -0.839 -1.031 1.338 sum 3.823 8.301 5.755 10.800 Atomic orbital electron populations 1.80857 1.14679 1.11803 1.11880 1.29713 0.95832 0.90107 0.89800 1.19080 0.80197 0.99702 0.90561 1.42632 1.59351 1.00277 1.13593 1.19712 1.28627 1.02050 0.95357 0.89029 1.26091 0.94730 0.97450 1.01425 1.69878 1.24382 1.18359 1.41249 0.84816 0.78950 0.76778 0.76735 1.18079 1.20140 1.20656 1.18703 0.82161 0.83865 0.80634 1.90808 1.55361 1.60855 1.43835 1.84226 1.82474 1.21274 1.35128 1.18838 0.96736 0.79854 1.01089 1.21470 0.98889 0.96213 1.00421 1.21340 1.00126 0.92253 0.99013 1.21672 0.93317 1.01969 0.96380 1.21479 0.99785 0.91643 0.99001 1.21486 0.96239 0.96602 1.00678 0.84164 0.85795 0.91172 0.88198 0.83160 0.81567 0.81434 0.84138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -25.71 18.54 20.01 0.37 -25.34 15 2 C 0.26 12.36 13.58 89.44 1.21 13.57 15 3 C 0.23 9.67 5.07 84.57 0.43 10.10 15 4 N -0.43 -21.29 2.60 -774.57 -2.02 -23.30 15 5 C -0.33 -17.31 9.33 84.02 0.78 -16.53 15 6 H 0.09 5.02 7.37 -2.91 -0.02 5.00 15 7 C 0.00 0.22 5.10 84.91 0.43 0.65 15 8 N -0.90 -44.66 9.03 21.66 0.20 -44.46 15 9 Si 1.00 39.60 29.57 68.60 2.03 41.63 15 10 H -0.26 -9.52 7.11 99.48 0.71 -8.82 15 11 H -0.28 -10.56 7.11 99.48 0.71 -9.85 15 12 H -0.28 -11.44 7.11 99.48 0.71 -10.73 15 13 C 0.59 29.55 8.13 129.79 1.05 30.61 15 14 O -0.62 -34.40 15.66 19.80 0.31 -34.09 15 15 O -0.32 -13.85 8.96 0.12 0.00 -13.85 15 16 C 0.08 2.96 5.10 22.51 0.11 3.07 15 17 C -0.15 -5.51 9.67 22.37 0.22 -5.29 15 18 C -0.11 -2.93 10.04 22.26 0.22 -2.70 15 19 C -0.12 -2.45 10.04 22.28 0.22 -2.22 15 20 C -0.10 -2.25 10.04 22.25 0.22 -2.03 15 21 C -0.13 -3.96 9.99 22.36 0.22 -3.74 15 22 H 0.14 5.79 6.35 -2.39 -0.02 5.78 15 23 H 0.12 4.19 7.57 -2.39 -0.02 4.17 15 24 H 0.28 13.28 8.31 -92.71 -0.77 12.51 15 25 H 0.10 3.99 8.06 -2.91 -0.02 3.96 15 26 H 0.15 3.11 8.06 -2.91 -0.02 3.09 15 27 H 0.17 2.09 8.06 -2.91 -0.02 2.07 15 28 H 0.17 2.32 8.06 -2.91 -0.02 2.30 15 29 H 0.14 3.74 8.06 -2.91 -0.02 3.72 15 Total: -1.00 -67.94 271.65 7.21 -60.73 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: 1.18 Total: 13.19 kcal Atomic # 6 Polarization: 20.36 SS G_CDS: 5.14 Total: 25.50 kcal Atomic # 7 Polarization: -91.66 SS G_CDS: -1.45 Total: -93.11 kcal Atomic # 8 Polarization: -48.25 SS G_CDS: 0.31 Total: -47.94 kcal Atomic # 14 Polarization: 39.60 SS G_CDS: 2.03 Total: 41.63 kcal Total: -67.94 7.21 -60.73 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070266656.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.416 kcal (2) G-P(sol) polarization free energy of solvation -67.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds