Wall clock time and date at job start Mon Mar 30 2020 03:51:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31460 * 1 3 3 Si 1.86800 * 119.99660 * 2 1 4 4 H 1.48499 * 109.46722 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47186 * 299.99547 * 3 2 1 6 6 H 1.48498 * 109.47561 * 59.99660 * 3 2 1 7 7 C 1.38899 * 119.99818 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99841 * 185.09510 * 7 2 1 9 9 N 1.37135 * 120.00437 * 5.10188 * 7 2 1 10 10 C 1.47307 * 126.68523 * 354.93094 * 9 7 2 11 11 C 1.51587 * 103.58907 * 180.02562 * 10 9 7 12 12 O 1.21241 * 127.15423 * 179.97438 * 11 10 9 13 13 N 1.34763 * 105.68923 * 359.97438 * 11 10 9 14 14 C 1.40173 * 124.17990 * 180.02562 * 13 11 10 15 15 C 1.38830 * 120.06848 * 5.76550 * 14 13 11 16 16 C 1.38119 * 119.93519 * 179.81286 * 15 14 13 17 17 C 1.38281 * 120.06692 * 0.43732 * 16 15 14 18 18 C 1.38277 * 120.13150 * 359.78764 * 17 16 15 19 19 C 1.38128 * 120.06742 * 0.02562 * 18 17 16 20 20 C 1.33799 * 111.64026 * 0.02562 * 13 11 10 21 21 O 1.21539 * 123.76808 * 180.26774 * 20 13 11 22 22 H 0.96995 * 119.99585 * 0.02562 * 1 2 3 23 23 H 1.08999 * 110.60095 * 298.54361 * 10 9 7 24 24 H 1.08997 * 110.60334 * 61.49529 * 10 9 7 25 25 H 1.08007 * 120.02881 * 0.02562 * 15 14 13 26 26 H 1.08000 * 119.96559 * 180.23221 * 16 15 14 27 27 H 1.07997 * 119.93635 * 179.77432 * 17 16 15 28 28 H 1.07992 * 119.96877 * 179.97438 * 18 17 16 29 29 H 1.07999 * 120.03544 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3146 0.0000 0.0000 3 14 2.2485 1.6178 0.0000 4 1 3.7085 1.3464 0.0006 5 1 1.8898 2.3964 -1.2125 6 1 1.8897 2.3966 1.2124 7 6 2.0091 -1.2029 0.0005 8 1 3.0859 -1.2047 0.0836 9 7 1.3275 -2.3883 -0.1045 10 6 -0.1349 -2.5641 -0.1206 11 6 -0.3119 -4.0638 -0.2526 12 8 -1.3571 -4.6759 -0.3065 13 7 0.9341 -4.5752 -0.2977 14 6 1.2204 -5.9421 -0.4186 15 6 0.1923 -6.8529 -0.6205 16 6 0.4779 -8.1987 -0.7431 17 6 1.7854 -8.6402 -0.6559 18 6 2.8111 -7.7359 -0.4502 19 6 2.5321 -6.3884 -0.3307 20 6 1.8641 -3.6171 -0.2128 21 8 3.0600 -3.8324 -0.2365 22 1 -0.4849 0.8400 -0.0004 23 1 -0.5744 -2.2067 0.8106 24 1 -0.5738 -2.0494 -0.9753 25 1 -0.8296 -6.5091 -0.6850 26 1 -0.3211 -8.9073 -0.9039 27 1 2.0060 -9.6933 -0.7485 28 1 3.8313 -8.0836 -0.3822 29 1 3.3336 -5.6826 -0.1696 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070632150.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:41 Heat of formation + Delta-G solvation = 2.678273 kcal Electronic energy + Delta-G solvation = -17436.210210 eV Core-core repulsion = 14518.980291 eV Total energy + Delta-G solvation = -2917.229919 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.79158 -38.51438 -37.84233 -35.34231 -34.66762 -32.24801 -30.58279 -29.57796 -27.32806 -25.15856 -23.04229 -22.66899 -20.88670 -19.80015 -18.00543 -16.96976 -16.38189 -16.00215 -15.88769 -15.25602 -14.45483 -14.11971 -13.78857 -13.74881 -13.35036 -13.09234 -13.01980 -12.91114 -12.12045 -11.75997 -11.71660 -11.22815 -11.00721 -10.72222 -10.50278 -10.32630 -9.59016 -9.53731 -8.97770 -8.64954 -8.33032 -7.87822 -6.67698 -4.16458 1.51007 1.69720 2.42217 2.93179 3.03601 3.12735 3.20222 3.76499 3.86445 4.26758 4.40176 4.93938 5.05106 5.18883 5.22178 5.41638 5.68930 5.72202 5.83595 6.09627 6.29988 6.40253 6.52951 6.65149 6.72100 6.83067 6.95709 7.22279 7.33582 7.79089 7.96495 8.20648 8.71551 8.92295 9.54179 10.42130 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.043106 B = 0.006654 C = 0.005789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.411996 B = 4206.840197 C = 4835.315361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.030 3.970 3 Si 0.943 3.057 4 H -0.266 1.266 5 H -0.277 1.277 6 H -0.278 1.278 7 C -0.286 4.286 8 H 0.116 0.884 9 N -0.436 5.436 10 C 0.099 3.901 11 C 0.499 3.501 12 O -0.494 6.494 13 N -0.519 5.519 14 C 0.154 3.846 15 C -0.151 4.151 16 C -0.107 4.107 17 C -0.145 4.145 18 C -0.107 4.107 19 C -0.139 4.139 20 C 0.620 3.380 21 O -0.581 6.581 22 H 0.277 0.723 23 H 0.125 0.875 24 H 0.129 0.871 25 H 0.150 0.850 26 H 0.123 0.877 27 H 0.118 0.882 28 H 0.123 0.877 29 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.119 -7.905 -0.639 7.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.174 4.174 3 Si 0.769 3.231 4 H -0.190 1.190 5 H -0.203 1.203 6 H -0.204 1.204 7 C -0.412 4.412 8 H 0.133 0.867 9 N -0.158 5.158 10 C -0.027 4.027 11 C 0.290 3.710 12 O -0.368 6.368 13 N -0.255 5.255 14 C 0.062 3.938 15 C -0.171 4.171 16 C -0.125 4.125 17 C -0.163 4.163 18 C -0.126 4.126 19 C -0.158 4.158 20 C 0.324 3.676 21 O -0.462 6.462 22 H 0.087 0.913 23 H 0.143 0.857 24 H 0.147 0.853 25 H 0.167 0.833 26 H 0.141 0.859 27 H 0.136 0.864 28 H 0.141 0.859 29 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -0.150 -7.979 -0.657 8.007 hybrid contribution 0.149 0.791 0.003 0.805 sum 0.000 -7.188 -0.655 7.218 Atomic orbital electron populations 1.69787 1.05911 1.28591 1.48419 1.25357 0.95961 0.99896 0.96137 0.85578 0.79532 0.79924 0.78073 1.18959 1.20294 1.20383 1.19633 0.92775 0.79453 1.49310 0.86683 1.43265 1.04481 1.04070 1.63954 1.22383 0.85029 0.87759 1.07528 1.22006 0.82305 0.92356 0.74355 1.90591 1.29490 1.68258 1.48435 1.43933 1.09962 1.06326 1.65309 1.17904 0.94677 0.81009 1.00247 1.21530 1.00167 0.92871 1.02498 1.20918 0.96589 0.94775 1.00250 1.21118 0.93112 0.99357 1.02762 1.21038 0.99103 0.92617 0.99805 1.21961 0.96566 0.97039 1.00271 1.15675 0.84616 0.81086 0.86214 1.90633 1.12276 1.82029 1.61304 0.91287 0.85710 0.85321 0.83265 0.85937 0.86417 0.85880 0.81715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -21.36 10.58 55.49 0.59 -20.78 15 2 C 0.03 0.72 5.49 -17.47 -0.10 0.62 15 3 Si 0.94 18.91 29.56 -169.99 -5.02 13.89 15 4 H -0.27 -5.31 7.11 56.52 0.40 -4.91 15 5 H -0.28 -5.53 7.11 56.52 0.40 -5.13 15 6 H -0.28 -5.53 7.11 56.52 0.40 -5.13 15 7 C -0.29 -7.26 10.03 -14.93 -0.15 -7.41 15 8 H 0.12 2.97 7.77 -52.48 -0.41 2.56 15 9 N -0.44 -10.71 3.12 -120.74 -0.38 -11.08 15 10 C 0.10 2.16 5.62 -4.32 -0.02 2.14 15 11 C 0.50 10.54 8.18 -10.55 -0.09 10.45 15 12 O -0.49 -10.45 15.06 5.59 0.08 -10.37 15 13 N -0.52 -11.33 2.83 -64.35 -0.18 -11.52 15 14 C 0.15 3.09 6.56 -83.60 -0.55 2.54 15 15 C -0.15 -2.67 9.32 -39.41 -0.37 -3.04 15 16 C -0.11 -1.55 10.04 -39.61 -0.40 -1.95 15 17 C -0.14 -1.97 10.04 -39.55 -0.40 -2.37 15 18 C -0.11 -1.61 10.04 -39.61 -0.40 -2.01 15 19 C -0.14 -2.61 9.26 -39.40 -0.36 -2.97 15 20 C 0.62 15.07 8.17 -88.02 -0.72 14.35 15 21 O -0.58 -15.04 14.32 5.33 0.08 -14.97 15 22 H 0.28 6.28 8.31 -40.82 -0.34 5.94 15 23 H 0.13 2.72 7.72 -51.93 -0.40 2.32 15 24 H 0.13 2.83 7.46 -51.93 -0.39 2.44 15 25 H 0.15 2.74 5.36 -52.48 -0.28 2.46 15 26 H 0.12 1.42 8.06 -52.49 -0.42 0.99 15 27 H 0.12 1.23 8.06 -52.49 -0.42 0.81 15 28 H 0.12 1.51 8.06 -52.49 -0.42 1.09 15 29 H 0.17 3.43 5.19 -52.49 -0.27 3.16 15 LS Contribution 255.51 15.07 3.85 3.85 Total: -1.00 -27.33 255.51 -6.69 -34.02 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -2.15 Total: 6.59 kcal Atomic # 6 Polarization: 13.91 SS G_CDS: -3.55 Total: 10.36 kcal Atomic # 7 Polarization: -43.40 SS G_CDS: 0.03 Total: -43.38 kcal Atomic # 8 Polarization: -25.50 SS G_CDS: 0.16 Total: -25.33 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.02 Total: 13.89 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -27.33 -6.69 -34.02 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070632150.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.697 kcal (2) G-P(sol) polarization free energy of solvation -27.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds