Wall clock time and date at job start Mon Mar 30 2020 03:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00306 * 2 1 4 4 H 1.48499 * 109.47389 * 240.00290 * 3 2 1 5 5 H 1.48508 * 109.46872 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46907 * 120.00018 * 3 2 1 7 7 C 1.37878 * 120.00167 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00269 * 179.97438 * 7 2 1 9 9 S 1.76200 * 119.99829 * 359.97438 * 7 2 1 10 10 O 1.42095 * 106.40070 * 66.46257 * 9 7 2 11 11 O 1.42106 * 106.40232 * 293.54617 * 9 7 2 12 12 N 1.65601 * 107.22091 * 180.02562 * 9 7 2 13 13 C 1.46499 * 120.00050 * 64.99842 * 12 9 7 14 14 C 1.52996 * 109.47196 * 165.00299 * 13 12 9 15 15 C 1.50702 * 109.47202 * 180.02562 * 14 13 12 16 16 N 1.30829 * 125.96102 * 304.97821 * 15 14 13 17 17 C 1.33239 * 109.82920 * 179.97438 * 16 15 14 18 18 N 1.30714 * 108.94945 * 359.97438 * 17 16 15 19 19 N 1.34428 * 125.96139 * 124.94746 * 15 14 13 20 20 H 0.97003 * 126.82574 * 0.02562 * 19 15 14 21 21 H 0.96998 * 119.99796 * 0.02562 * 1 2 3 22 22 H 0.96996 * 119.99643 * 245.00222 * 12 9 7 23 23 H 1.09002 * 109.46916 * 45.00002 * 13 12 9 24 24 H 1.09002 * 109.47085 * 285.00443 * 13 12 9 25 25 H 1.08993 * 109.47163 * 59.99993 * 14 13 12 26 26 H 1.09002 * 109.47221 * 300.00061 * 14 13 12 27 27 H 1.08002 * 125.53210 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 16 1.1236 -2.7200 -0.0005 10 8 0.4510 -2.7950 -1.2500 11 8 0.4518 -2.7955 1.2494 12 7 2.2483 -3.9354 -0.0005 13 6 3.1393 -4.1089 1.1493 14 6 3.8047 -5.4847 1.0759 15 6 4.7208 -5.6634 2.2591 16 7 5.6933 -4.8599 2.6060 17 6 6.2943 -5.3241 3.7008 18 7 5.7097 -6.4341 4.0677 19 7 4.6810 -6.6758 3.1425 20 1 4.0642 -7.4245 3.1415 21 1 -0.4850 0.8400 -0.0004 22 1 2.3171 -4.5325 -0.7619 23 1 2.5622 -4.0330 2.0709 24 1 3.9054 -3.3336 1.1355 25 1 4.3817 -5.5605 0.1544 26 1 3.0386 -6.2600 1.0897 27 1 7.1292 -4.8588 4.2036 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070820304.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:54 Heat of formation + Delta-G solvation = -13.181101 kcal Electronic energy + Delta-G solvation = -15517.939114 eV Core-core repulsion = 12631.925089 eV Total energy + Delta-G solvation = -2886.014025 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 246.057 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.19404 -35.81983 -35.12936 -33.96072 -33.07544 -32.65233 -32.03355 -28.62837 -26.10746 -23.39263 -22.73787 -20.69138 -19.04060 -18.08239 -17.36481 -16.18957 -15.87601 -15.32534 -15.00936 -14.62109 -14.48443 -13.92113 -13.62470 -13.29903 -12.32494 -12.04136 -11.88350 -11.59754 -11.21170 -11.16624 -10.59386 -10.45157 -10.32283 -10.29905 -10.20477 -10.12723 -9.62680 -9.21176 -9.04747 -8.51930 -6.68036 -5.29799 1.47762 2.27731 2.56306 2.86499 3.12252 3.16053 3.22515 3.98457 4.10770 4.57180 4.66196 4.67531 4.93908 5.07448 5.24963 5.48024 5.77532 6.04819 6.08898 6.22828 6.34031 6.46651 6.77633 6.89377 7.34752 7.85192 7.99001 8.00156 8.91721 10.26205 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.030136 B = 0.006225 C = 0.005465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.889331 B = 4496.556121 C = 5122.393122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.133 3.867 3 Si 0.921 3.079 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.263 1.263 7 C -1.020 5.020 8 H 0.104 0.896 9 S 2.716 3.284 10 O -1.006 7.006 11 O -1.007 7.007 12 N -1.138 6.138 13 C 0.136 3.864 14 C -0.052 4.052 15 C 0.296 3.704 16 N -0.535 5.535 17 C 0.205 3.795 18 N -0.325 5.325 19 N -0.482 5.482 20 H 0.440 0.560 21 H 0.291 0.709 22 H 0.402 0.598 23 H 0.076 0.924 24 H 0.078 0.922 25 H 0.107 0.893 26 H 0.092 0.908 27 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.388 -10.098 3.156 14.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C -0.085 4.085 3 Si 0.745 3.255 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.188 1.188 7 C -1.154 5.154 8 H 0.122 0.878 9 S 2.816 3.184 10 O -0.996 6.996 11 O -0.997 6.997 12 N -0.893 5.893 13 C 0.008 3.992 14 C -0.093 4.093 15 C 0.017 3.983 16 N -0.264 5.264 17 C -0.098 4.098 18 N -0.154 5.154 19 N -0.200 5.200 20 H 0.286 0.714 21 H 0.101 0.899 22 H 0.233 0.767 23 H 0.094 0.906 24 H 0.096 0.904 25 H 0.125 0.875 26 H 0.111 0.889 27 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 8.614 -10.113 3.819 13.823 hybrid contribution 0.642 0.469 -0.336 0.863 sum 9.256 -9.644 3.483 13.813 Atomic orbital electron populations 1.69887 1.06796 1.30826 1.40144 1.24743 0.94454 1.00855 0.88446 0.86196 0.79861 0.79617 0.79860 1.18835 1.20213 1.18781 1.30519 1.06197 1.11787 1.66881 0.87820 1.00369 0.71989 0.73244 0.72801 1.93377 1.72988 1.87616 1.45605 1.93359 1.72861 1.87492 1.45984 1.56015 1.55733 1.51422 1.26116 1.20907 0.93707 0.94779 0.89810 1.20500 0.95853 1.00326 0.92609 1.24306 0.95078 0.85486 0.93449 1.70529 1.10005 1.29906 1.15924 1.26060 0.99846 0.91136 0.92762 1.77996 1.03165 1.20415 1.13818 1.48074 1.28027 1.22716 1.21193 0.71431 0.89858 0.76705 0.90554 0.90393 0.87507 0.88943 0.76536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.82 13.19 55.43 0.73 -24.09 15 2 C 0.13 3.70 5.46 -17.82 -0.10 3.60 15 3 Si 0.92 20.61 29.54 -169.99 -5.02 15.59 15 4 H -0.26 -5.71 7.11 56.52 0.40 -5.30 15 5 H -0.28 -5.94 7.11 56.52 0.40 -5.54 15 6 H -0.26 -5.71 7.11 56.52 0.40 -5.31 15 7 C -1.02 -27.74 9.72 30.60 0.30 -27.44 15 8 H 0.10 2.58 7.81 -52.49 -0.41 2.17 15 9 S 2.72 69.75 5.02 -107.50 -0.54 69.21 15 10 O -1.01 -28.65 18.02 -57.17 -1.03 -29.68 15 11 O -1.01 -28.74 17.49 -57.17 -1.00 -29.74 15 12 N -1.14 -20.66 6.00 -10.61 -0.06 -20.72 15 13 C 0.14 2.16 6.18 -4.04 -0.03 2.13 15 14 C -0.05 -0.56 5.98 -27.88 -0.17 -0.73 15 15 C 0.30 3.62 7.51 -155.70 -1.17 2.45 15 16 N -0.53 -7.47 11.16 -11.97 -0.13 -7.60 15 17 C 0.21 2.48 13.03 -91.81 -1.20 1.28 15 18 N -0.33 -4.07 12.80 29.29 0.37 -3.70 15 19 N -0.48 -5.19 7.45 32.62 0.24 -4.95 15 20 H 0.44 3.20 8.96 -182.33 -1.63 1.57 15 21 H 0.29 7.69 8.31 -40.82 -0.34 7.35 15 22 H 0.40 5.96 8.65 -34.47 -0.30 5.66 15 23 H 0.08 1.31 7.75 -51.93 -0.40 0.91 15 24 H 0.08 1.28 8.14 -51.93 -0.42 0.86 15 25 H 0.11 0.99 8.14 -51.93 -0.42 0.57 15 26 H 0.09 0.76 8.14 -51.93 -0.42 0.34 15 27 H 0.22 1.77 8.06 -52.49 -0.42 1.35 15 LS Contribution 263.83 15.07 3.98 3.98 Total: -1.00 -37.40 263.83 -8.39 -45.79 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -3.57 Total: 4.62 kcal Atomic # 6 Polarization: -16.35 SS G_CDS: -2.36 Total: -18.71 kcal Atomic # 7 Polarization: -62.21 SS G_CDS: 1.15 Total: -61.06 kcal Atomic # 8 Polarization: -57.38 SS G_CDS: -2.03 Total: -59.41 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Atomic # 16 Polarization: 69.75 SS G_CDS: -0.54 Total: 69.21 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -37.40 -8.39 -45.79 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070820304.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.609 kcal (2) G-P(sol) polarization free energy of solvation -37.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds