Wall clock time and date at job start Mon Mar 30 2020 03:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00306 * 2 1 4 4 H 1.48499 * 109.47389 * 240.00290 * 3 2 1 5 5 H 1.48508 * 109.46872 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46907 * 120.00018 * 3 2 1 7 7 C 1.37878 * 120.00167 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00269 * 179.97438 * 7 2 1 9 9 S 1.76200 * 119.99829 * 359.97438 * 7 2 1 10 10 O 1.42095 * 106.40070 * 66.46257 * 9 7 2 11 11 O 1.42106 * 106.40232 * 293.54617 * 9 7 2 12 12 N 1.65601 * 107.22091 * 180.02562 * 9 7 2 13 13 C 1.46499 * 120.00050 * 64.99842 * 12 9 7 14 14 C 1.52996 * 109.47196 * 165.00299 * 13 12 9 15 15 C 1.50702 * 109.47202 * 180.02562 * 14 13 12 16 16 N 1.30829 * 125.96102 * 304.97821 * 15 14 13 17 17 C 1.33239 * 109.82920 * 179.97438 * 16 15 14 18 18 N 1.30714 * 108.94945 * 359.97438 * 17 16 15 19 19 N 1.34428 * 125.96139 * 124.94746 * 15 14 13 20 20 H 0.97003 * 126.82574 * 0.02562 * 19 15 14 21 21 H 0.96998 * 119.99796 * 0.02562 * 1 2 3 22 22 H 0.96996 * 119.99643 * 245.00222 * 12 9 7 23 23 H 1.09002 * 109.46916 * 45.00002 * 13 12 9 24 24 H 1.09002 * 109.47085 * 285.00443 * 13 12 9 25 25 H 1.08993 * 109.47163 * 59.99993 * 14 13 12 26 26 H 1.09002 * 109.47221 * 300.00061 * 14 13 12 27 27 H 1.08002 * 125.53210 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 16 1.1236 -2.7200 -0.0005 10 8 0.4510 -2.7950 -1.2500 11 8 0.4518 -2.7955 1.2494 12 7 2.2483 -3.9354 -0.0005 13 6 3.1393 -4.1089 1.1493 14 6 3.8047 -5.4847 1.0759 15 6 4.7208 -5.6634 2.2591 16 7 5.6933 -4.8599 2.6060 17 6 6.2943 -5.3241 3.7008 18 7 5.7097 -6.4341 4.0677 19 7 4.6810 -6.6758 3.1425 20 1 4.0642 -7.4245 3.1415 21 1 -0.4850 0.8400 -0.0004 22 1 2.3171 -4.5325 -0.7619 23 1 2.5622 -4.0330 2.0709 24 1 3.9054 -3.3336 1.1355 25 1 4.3817 -5.5605 0.1544 26 1 3.0386 -6.2600 1.0897 27 1 7.1292 -4.8588 4.2036 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070820304.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:54 Heat of formation + Delta-G solvation = -44.476882 kcal Electronic energy + Delta-G solvation = -15519.296201 eV Core-core repulsion = 12631.925089 eV Total energy + Delta-G solvation = -2887.371112 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 246.057 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.09973 -37.46355 -36.93139 -36.11350 -35.14651 -33.59534 -33.14104 -29.72924 -28.21774 -24.60361 -23.63811 -21.69224 -20.95884 -19.46710 -18.84419 -18.12249 -17.23287 -16.80480 -16.50157 -15.94298 -15.76017 -15.41509 -15.20432 -14.71214 -13.96072 -13.43701 -13.21000 -13.10759 -12.97249 -12.64291 -12.47357 -12.38435 -12.30347 -12.24518 -11.22311 -11.20605 -11.08436 -10.99289 -10.57891 -10.18352 -8.72706 -7.44688 0.34105 0.60501 1.36901 1.38907 1.51513 1.71773 1.94089 2.23793 2.61239 2.94354 3.27205 3.68703 3.74896 3.99529 4.02973 4.25697 4.55379 4.58704 4.82132 4.97788 5.16286 5.22897 5.34012 5.48033 5.93603 6.14349 6.46733 6.82461 7.09209 8.23335 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.030136 B = 0.006225 C = 0.005465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.889331 B = 4496.556121 C = 5122.393122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.071 3.929 3 Si 0.987 3.013 4 H -0.250 1.250 5 H -0.265 1.265 6 H -0.252 1.252 7 C -1.044 5.044 8 H 0.120 0.880 9 S 2.725 3.275 10 O -1.041 7.041 11 O -1.044 7.044 12 N -1.117 6.117 13 C 0.131 3.869 14 C -0.040 4.040 15 C 0.292 3.708 16 N -0.568 5.568 17 C 0.199 3.801 18 N -0.343 5.343 19 N -0.471 5.471 20 H 0.455 0.545 21 H 0.298 0.702 22 H 0.421 0.579 23 H 0.059 0.941 24 H 0.071 0.929 25 H 0.130 0.870 26 H 0.124 0.876 27 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.054 -10.356 3.102 15.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.142 4.142 3 Si 0.805 3.195 4 H -0.174 1.174 5 H -0.189 1.189 6 H -0.176 1.176 7 C -1.177 5.177 8 H 0.139 0.861 9 S 2.826 3.174 10 O -1.031 7.031 11 O -1.034 7.034 12 N -0.878 5.878 13 C 0.003 3.997 14 C -0.081 4.081 15 C 0.012 3.988 16 N -0.297 5.297 17 C -0.103 4.103 18 N -0.172 5.172 19 N -0.191 5.191 20 H 0.303 0.697 21 H 0.108 0.892 22 H 0.256 0.744 23 H 0.077 0.923 24 H 0.089 0.911 25 H 0.148 0.852 26 H 0.142 0.858 27 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 10.265 -10.418 3.755 15.099 hybrid contribution 0.155 0.449 -0.290 0.557 sum 10.420 -9.969 3.465 14.831 Atomic orbital electron populations 1.69977 1.08699 1.32325 1.41577 1.25972 0.95341 1.05325 0.87582 0.85204 0.78800 0.74743 0.80721 1.17362 1.18926 1.17575 1.30946 1.07315 1.12860 1.66545 0.86141 0.99706 0.72450 0.73854 0.71432 1.93320 1.74710 1.88355 1.46755 1.93308 1.74538 1.88223 1.47290 1.55244 1.54813 1.49947 1.27756 1.21022 0.92861 0.97947 0.87880 1.20456 0.96503 0.97924 0.93258 1.24392 0.94967 0.85694 0.93744 1.70516 1.11065 1.31090 1.17061 1.26677 1.00322 0.90942 0.92378 1.77955 1.03859 1.20897 1.14486 1.48021 1.27829 1.22923 1.20341 0.69689 0.89163 0.74410 0.92270 0.91100 0.85164 0.85774 0.73781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -53.13 13.19 21.45 0.28 -52.85 15 2 C 0.07 3.91 5.46 84.66 0.46 4.38 15 3 Si 0.99 41.29 29.54 68.60 2.03 43.31 15 4 H -0.25 -9.82 7.11 99.48 0.71 -9.11 15 5 H -0.27 -10.44 7.11 99.48 0.71 -9.74 15 6 H -0.25 -9.99 7.11 99.48 0.71 -9.28 15 7 C -1.04 -56.59 9.72 67.73 0.66 -55.93 15 8 H 0.12 5.88 7.81 -2.91 -0.02 5.86 15 9 S 2.73 140.98 5.02 -56.49 -0.28 140.70 15 10 O -1.04 -60.12 18.02 -128.00 -2.31 -62.43 15 11 O -1.04 -60.71 17.49 -128.00 -2.24 -62.95 15 12 N -1.12 -39.25 6.00 -187.49 -1.12 -40.37 15 13 C 0.13 3.95 6.18 86.38 0.53 4.49 15 14 C -0.04 -0.77 5.98 29.85 0.18 -0.59 15 15 C 0.29 6.51 7.51 138.23 1.04 7.55 15 16 N -0.57 -14.93 11.16 -191.78 -2.14 -17.07 15 17 C 0.20 4.50 13.03 180.77 2.36 6.85 15 18 N -0.34 -8.01 12.80 -61.24 -0.78 -8.79 15 19 N -0.47 -9.17 7.45 -50.71 -0.38 -9.55 15 20 H 0.45 5.55 8.96 -213.09 -1.91 3.64 15 21 H 0.30 15.98 8.31 -92.71 -0.77 15.21 15 22 H 0.42 11.64 8.65 -96.75 -0.84 10.80 15 23 H 0.06 2.00 7.75 -2.39 -0.02 1.98 15 24 H 0.07 2.26 8.14 -2.39 -0.02 2.24 15 25 H 0.13 1.93 8.14 -2.39 -0.02 1.91 15 26 H 0.12 1.59 8.14 -2.39 -0.02 1.57 15 27 H 0.25 3.55 8.06 -2.91 -0.02 3.52 15 Total: -1.00 -81.41 263.83 -3.24 -84.65 By element: Atomic # 1 Polarization: 20.13 SS G_CDS: -1.52 Total: 18.61 kcal Atomic # 6 Polarization: -38.48 SS G_CDS: 5.23 Total: -33.26 kcal Atomic # 7 Polarization: -124.50 SS G_CDS: -4.14 Total: -128.64 kcal Atomic # 8 Polarization: -120.83 SS G_CDS: -4.54 Total: -125.38 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 2.03 Total: 43.31 kcal Atomic # 16 Polarization: 140.98 SS G_CDS: -0.28 Total: 140.70 kcal Total: -81.41 -3.24 -84.65 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070820304.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.175 kcal (2) G-P(sol) polarization free energy of solvation -81.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds