Wall clock time and date at job start Mon Mar 30 2020 03:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.47004 * 2 1 4 4 C 1.50697 * 109.46543 * 120.00008 * 2 1 3 5 5 H 1.08002 * 120.00154 * 120.00366 * 4 2 1 6 6 C 1.37872 * 120.00212 * 299.99464 * 4 2 1 7 7 N 1.31518 * 120.00008 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 120.00183 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47117 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47275 * 120.00023 * 8 6 4 11 11 H 1.48496 * 109.47474 * 240.00243 * 8 6 4 12 12 N 1.46501 * 109.46730 * 240.00045 * 2 1 3 13 13 C 1.34620 * 124.45686 * 119.98417 * 12 2 1 14 14 O 1.21417 * 125.76225 * 0.02562 * 13 12 2 15 15 C 1.47796 * 108.47827 * 179.97438 * 13 12 2 16 16 C 1.38512 * 135.50204 * 179.97438 * 15 13 12 17 17 C 1.38951 * 118.62961 * 179.24324 * 16 15 13 18 18 N 1.31770 * 121.20492 * 0.64700 * 17 16 15 19 19 C 1.32109 * 122.34859 * 359.57677 * 18 17 16 20 20 C 1.38573 * 120.25107 * 0.02562 * 19 18 17 21 21 C 1.34583 * 124.45689 * 299.97224 * 12 2 1 22 22 O 1.21453 * 125.66467 * 0.02562 * 21 12 2 23 23 H 1.09005 * 109.47256 * 300.00444 * 1 2 3 24 24 H 1.08997 * 109.46909 * 59.99663 * 1 2 3 25 25 H 1.08994 * 109.47666 * 180.02562 * 1 2 3 26 26 H 0.96998 * 119.99491 * 180.02562 * 7 6 4 27 27 H 1.07991 * 120.68709 * 359.97438 * 16 15 13 28 28 H 1.07999 * 119.39311 * 180.24890 * 17 16 15 29 29 H 1.07997 * 119.87745 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6992 -0.2393 2.4827 7 7 0.9428 0.8298 2.6033 8 14 2.3223 -1.1196 4.0080 9 1 3.1481 -2.2858 3.6039 10 1 3.1472 -0.1859 4.8161 11 1 1.1676 -1.5865 4.8165 12 7 2.0183 -0.6906 -1.1962 13 6 2.7952 -0.1246 -2.1387 14 8 3.1970 1.0212 -2.1330 15 6 3.0775 -1.1336 -3.1811 16 6 3.7946 -1.1562 -4.3659 17 6 3.8423 -2.3394 -5.0929 18 7 3.2117 -3.4202 -4.6800 19 6 2.5118 -3.4457 -3.5598 20 6 2.4180 -2.3115 -2.7693 21 6 1.7494 -1.9745 -1.4973 22 8 1.0734 -2.7316 -0.8303 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 0.7089 1.1613 3.4844 27 1 4.3158 -0.2757 -4.7115 28 1 4.4012 -2.3719 -6.0164 29 1 2.0102 -4.3538 -3.2594 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070906512.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:42 Heat of formation + Delta-G solvation = -4.212061 kcal Electronic energy + Delta-G solvation = -17425.293553 eV Core-core repulsion = 14507.764847 eV Total energy + Delta-G solvation = -2917.528706 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.00124 -39.30191 -38.05701 -35.44262 -34.25434 -32.25373 -31.52372 -29.39513 -25.40350 -25.19277 -24.67394 -22.33914 -21.48026 -19.38008 -17.83601 -17.17142 -16.61540 -16.13289 -15.70148 -15.15884 -15.06745 -14.30448 -14.20477 -13.83625 -13.78834 -13.43959 -12.78256 -12.45109 -11.85633 -11.37723 -11.09874 -10.94624 -10.57958 -10.44039 -10.28344 -10.13244 -9.92989 -9.70789 -9.42897 -9.35616 -8.64023 -8.52942 -6.20691 -4.28243 0.09597 0.74010 2.28581 3.00526 3.23670 3.31090 3.36998 3.49072 3.65793 3.76657 4.17083 4.31927 4.48290 4.64394 4.78289 5.03812 5.13072 5.47672 5.56235 5.71104 6.24388 6.30371 6.51852 6.73822 6.77745 7.10168 7.47984 7.58123 7.69670 7.74664 7.81945 8.06150 8.29453 8.72686 9.37898 10.85737 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.033503 B = 0.007114 C = 0.006656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.537130 B = 3935.060978 C = 4205.713335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.262 3.738 3 H 0.068 0.932 4 C -0.525 4.525 5 H 0.062 0.938 6 C 0.068 3.932 7 N -0.888 5.888 8 Si 0.906 3.094 9 H -0.272 1.272 10 H -0.282 1.282 11 H -0.280 1.280 12 N -0.549 5.549 13 C 0.566 3.434 14 O -0.467 6.467 15 C -0.090 4.090 16 C -0.108 4.108 17 C 0.122 3.878 18 N -0.473 5.473 19 C 0.165 3.835 20 C -0.189 4.189 21 C 0.573 3.427 22 O -0.443 6.443 23 H 0.103 0.897 24 H 0.013 0.987 25 H 0.047 0.953 26 H 0.266 0.734 27 H 0.152 0.848 28 H 0.172 0.828 29 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.782 -4.687 -12.837 14.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.166 3.834 3 H 0.086 0.914 4 C -0.563 4.563 5 H 0.081 0.919 6 C -0.135 4.135 7 N -0.526 5.526 8 Si 0.734 3.266 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.206 1.206 12 N -0.289 5.289 13 C 0.352 3.648 14 O -0.339 6.339 15 C -0.101 4.101 16 C -0.128 4.128 17 C -0.038 4.038 18 N -0.182 5.182 19 C 0.010 3.990 20 C -0.195 4.195 21 C 0.359 3.641 22 O -0.313 6.313 23 H 0.121 0.879 24 H 0.032 0.968 25 H 0.066 0.934 26 H 0.076 0.924 27 H 0.170 0.830 28 H 0.189 0.811 29 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 3.523 -5.063 -12.687 14.107 hybrid contribution 0.285 0.413 1.340 1.431 sum 3.808 -4.650 -11.347 12.840 Atomic orbital electron populations 1.22155 0.96565 1.01218 1.01325 1.19364 0.92324 0.93533 0.78218 0.91394 1.21165 1.32485 1.13024 0.89636 0.91935 1.24839 0.94662 0.94907 0.99065 1.69864 1.36032 1.22543 1.24131 0.86296 0.78714 0.79542 0.82080 1.19653 1.20781 1.20630 1.47276 1.45360 1.12554 1.23743 1.18235 0.78213 0.86525 0.81805 1.90752 1.49694 1.17132 1.76320 1.21266 0.97237 0.95692 0.95943 1.21838 0.97697 1.00463 0.92840 1.23194 0.94465 0.87315 0.98799 1.67837 1.07180 1.29072 1.14075 1.22398 0.92388 0.96557 0.87623 1.22049 1.02072 0.96524 0.98852 1.17957 0.80096 0.82171 0.83876 1.90763 1.34508 1.52236 1.53748 0.87877 0.96785 0.93372 0.92416 0.83027 0.81117 0.80986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.76 8.98 37.16 0.33 -3.42 15 2 C 0.26 6.68 2.78 -69.08 -0.19 6.48 15 3 H 0.07 1.86 7.59 -51.93 -0.39 1.47 15 4 C -0.52 -14.43 8.11 -34.44 -0.28 -14.71 15 5 H 0.06 1.76 7.69 -52.49 -0.40 1.35 15 6 C 0.07 1.86 5.30 -17.82 -0.09 1.76 15 7 N -0.89 -24.63 11.32 55.43 0.63 -24.00 15 8 Si 0.91 21.34 29.54 -169.99 -5.02 16.32 15 9 H -0.27 -6.41 7.11 56.52 0.40 -6.01 15 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 15 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 15 12 N -0.55 -12.14 2.51 -111.79 -0.28 -12.42 15 13 C 0.57 11.27 8.03 -12.42 -0.10 11.17 15 14 O -0.47 -10.20 17.44 5.44 0.09 -10.11 15 15 C -0.09 -1.40 6.48 -104.79 -0.68 -2.08 15 16 C -0.11 -1.22 10.17 -39.22 -0.40 -1.62 15 17 C 0.12 1.19 11.19 -17.31 -0.19 1.00 15 18 N -0.47 -5.68 10.33 -12.94 -0.13 -5.81 15 19 C 0.17 2.16 11.24 -17.31 -0.19 1.97 15 20 C -0.19 -3.04 6.45 -104.86 -0.68 -3.71 15 21 C 0.57 11.74 7.29 -12.53 -0.09 11.65 15 22 O -0.44 -10.08 16.13 5.41 0.09 -9.99 15 23 H 0.10 2.69 6.07 -51.93 -0.32 2.37 15 24 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 15 25 H 0.05 1.18 6.84 -51.93 -0.35 0.82 15 26 H 0.27 6.97 8.31 -40.82 -0.34 6.63 15 27 H 0.15 1.33 8.06 -52.49 -0.42 0.91 15 28 H 0.17 0.97 8.06 -52.49 -0.42 0.54 15 29 H 0.17 1.89 8.06 -52.49 -0.42 1.46 15 LS Contribution 263.41 15.07 3.97 3.97 Total: -1.00 -30.87 263.41 -5.52 -36.38 By element: Atomic # 1 Polarization: -0.54 SS G_CDS: -2.29 Total: -2.83 kcal Atomic # 6 Polarization: 11.05 SS G_CDS: -2.57 Total: 8.49 kcal Atomic # 7 Polarization: -42.44 SS G_CDS: 0.21 Total: -42.23 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: 0.18 Total: -20.10 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -30.87 -5.52 -36.38 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070906512.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.170 kcal (2) G-P(sol) polarization free energy of solvation -30.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds