Wall clock time and date at job start Mon Mar 30 2020 03:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47235 * 2 1 4 4 C 1.50696 * 109.47474 * 239.99535 * 2 1 3 5 5 H 1.07991 * 120.00132 * 245.47126 * 4 2 1 6 6 C 1.37879 * 119.99787 * 65.46687 * 4 2 1 7 7 N 1.31513 * 120.00046 * 9.60261 * 6 4 2 8 8 Si 1.86800 * 120.00069 * 189.59903 * 6 4 2 9 9 H 1.48501 * 109.47000 * 84.99548 * 8 6 4 10 10 H 1.48497 * 109.47143 * 204.99498 * 8 6 4 11 11 H 1.48498 * 109.47111 * 324.99974 * 8 6 4 12 12 N 1.46506 * 109.46978 * 119.99552 * 2 1 3 13 13 C 1.34623 * 124.46054 * 240.00143 * 12 2 1 14 14 O 1.21418 * 125.75771 * 359.97438 * 13 12 2 15 15 C 1.47788 * 108.48103 * 179.97438 * 13 12 2 16 16 C 1.38508 * 135.50344 * 180.02562 * 15 13 12 17 17 C 1.38945 * 118.63690 * 179.97438 * 16 15 13 18 18 N 1.31775 * 121.20155 * 359.97438 * 17 16 15 19 19 C 1.32108 * 122.34798 * 0.02562 * 18 17 16 20 20 C 1.38572 * 120.25136 * 359.97428 * 19 18 17 21 21 C 1.34580 * 124.45471 * 59.69616 * 12 2 1 22 22 O 1.21454 * 125.66525 * 0.02562 * 21 12 2 23 23 H 1.09004 * 109.47273 * 303.05635 * 1 2 3 24 24 H 1.09005 * 109.46372 * 63.05081 * 1 2 3 25 25 H 1.09000 * 109.47242 * 183.05317 * 1 2 3 26 26 H 0.96999 * 120.00276 * 180.02562 * 7 6 4 27 27 H 1.07996 * 120.68657 * 359.96085 * 16 15 13 28 28 H 1.07991 * 119.39872 * 180.02562 * 17 16 15 29 29 H 1.08001 * 119.87036 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0325 -0.7105 -1.2303 5 1 2.5785 -1.6371 -1.1336 6 6 1.7948 -0.1774 -2.4795 7 7 1.3004 1.0359 -2.5935 8 14 2.1752 -1.1786 -4.0100 9 1 1.0225 -2.0607 -4.3236 10 1 2.4224 -0.2623 -5.1521 11 1 3.3831 -2.0087 -3.7710 12 7 2.0184 -0.6905 1.1963 13 6 2.7955 -0.1246 2.1387 14 8 3.1975 1.0211 2.1327 15 6 3.0768 -1.1331 3.1817 16 6 3.7935 -1.1555 4.3666 17 6 3.8266 -2.3334 5.1028 18 7 3.1924 -3.4131 4.6921 19 6 2.4964 -3.4400 3.5696 20 6 2.4105 -2.3086 2.7741 21 6 1.7442 -1.9725 1.5007 22 8 1.0636 -2.7280 0.8366 23 1 -0.3634 0.5606 0.8613 24 1 -0.3632 0.4658 -0.9162 25 1 -0.3634 -1.0262 0.0547 26 1 1.1329 1.4108 -3.4723 27 1 4.3162 -0.2755 4.7113 28 1 4.3814 -2.3645 6.0288 29 1 1.9923 -4.3473 3.2708 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070906516.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:44 Heat of formation + Delta-G solvation = -5.520841 kcal Electronic energy + Delta-G solvation = -17416.446901 eV Core-core repulsion = 14498.861442 eV Total energy + Delta-G solvation = -2917.585459 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.00612 -39.30539 -38.06338 -35.44329 -34.23132 -32.24859 -31.53480 -29.48821 -25.37851 -25.19510 -24.69240 -22.34465 -21.51170 -19.38984 -17.84690 -17.16506 -16.60942 -16.13681 -15.70292 -15.15042 -15.07103 -14.29771 -14.20784 -13.83819 -13.78965 -13.45074 -12.75775 -12.45419 -11.95245 -11.33300 -11.24390 -10.88100 -10.66439 -10.45996 -10.32153 -10.13376 -9.91129 -9.71931 -9.43155 -9.37260 -8.65097 -8.52521 -6.22679 -4.26889 0.09322 0.73952 2.28263 3.00169 3.26155 3.31669 3.35800 3.48853 3.65482 3.76307 4.16910 4.32756 4.48135 4.63990 4.78163 5.03772 5.12034 5.47568 5.56035 5.71006 6.24092 6.27614 6.47649 6.68294 6.72894 7.04642 7.39708 7.57332 7.64872 7.74468 7.77102 8.03332 8.28223 8.73929 9.37856 10.85743 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.033567 B = 0.007147 C = 0.006617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.958790 B = 3916.808687 C = 4230.785249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.261 3.739 3 H 0.075 0.925 4 C -0.529 4.529 5 H 0.063 0.937 6 C 0.071 3.929 7 N -0.885 5.885 8 Si 0.903 3.097 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.549 5.549 13 C 0.566 3.434 14 O -0.465 6.465 15 C -0.089 4.089 16 C -0.108 4.108 17 C 0.122 3.878 18 N -0.473 5.473 19 C 0.165 3.835 20 C -0.189 4.189 21 C 0.573 3.427 22 O -0.445 6.445 23 H 0.018 0.982 24 H 0.086 0.914 25 H 0.049 0.951 26 H 0.267 0.733 27 H 0.152 0.848 28 H 0.172 0.828 29 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.086 -5.043 12.958 14.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.164 3.836 3 H 0.092 0.908 4 C -0.567 4.567 5 H 0.081 0.919 6 C -0.133 4.133 7 N -0.522 5.522 8 Si 0.730 3.270 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.289 5.289 13 C 0.352 3.648 14 O -0.337 6.337 15 C -0.101 4.101 16 C -0.128 4.128 17 C -0.038 4.038 18 N -0.182 5.182 19 C 0.010 3.990 20 C -0.195 4.195 21 C 0.359 3.641 22 O -0.315 6.315 23 H 0.037 0.963 24 H 0.104 0.896 25 H 0.068 0.932 26 H 0.077 0.923 27 H 0.170 0.830 28 H 0.189 0.811 29 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 2.849 -5.387 12.814 14.190 hybrid contribution 0.178 0.351 -1.381 1.436 sum 3.027 -5.036 11.433 12.855 Atomic orbital electron populations 1.22085 0.96962 1.00668 1.00999 1.19361 0.91866 0.94057 0.78281 0.90763 1.21086 1.37322 1.08553 0.89760 0.91918 1.24847 0.94747 0.94657 0.99051 1.69940 1.44000 1.13685 1.24598 0.86422 0.78990 0.79884 0.81680 1.20148 1.21072 1.19845 1.47258 1.45321 1.12603 1.23712 1.18228 0.78248 0.86529 0.81770 1.90758 1.49567 1.17129 1.76239 1.21261 0.97166 0.95686 0.95977 1.21838 0.97741 1.00485 0.92771 1.23193 0.94406 0.87347 0.98803 1.67839 1.07185 1.28909 1.14244 1.22397 0.92428 0.96544 0.87590 1.22041 1.02086 0.96593 0.98810 1.17968 0.80070 0.82156 0.83869 1.90760 1.34450 1.52260 1.54043 0.96293 0.89570 0.93159 0.92335 0.83016 0.81113 0.80991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.55 9.11 37.16 0.34 -3.21 15 2 C 0.26 6.62 2.64 -69.08 -0.18 6.44 15 3 H 0.07 2.06 7.53 -51.93 -0.39 1.66 15 4 C -0.53 -14.54 8.07 -34.44 -0.28 -14.82 15 5 H 0.06 1.76 7.63 -52.49 -0.40 1.36 15 6 C 0.07 1.93 5.18 -17.82 -0.09 1.84 15 7 N -0.89 -24.73 12.16 55.43 0.67 -24.06 15 8 Si 0.90 21.35 29.55 -169.99 -5.02 16.33 15 9 H -0.28 -6.48 7.11 56.52 0.40 -6.08 15 10 H -0.29 -6.61 7.11 56.52 0.40 -6.21 15 11 H -0.27 -6.45 7.11 56.52 0.40 -6.04 15 12 N -0.55 -12.10 2.51 -111.79 -0.28 -12.38 15 13 C 0.57 11.29 8.03 -12.42 -0.10 11.19 15 14 O -0.47 -10.23 17.44 5.44 0.09 -10.13 15 15 C -0.09 -1.39 6.48 -104.79 -0.68 -2.07 15 16 C -0.11 -1.22 10.17 -39.22 -0.40 -1.62 15 17 C 0.12 1.19 11.19 -17.31 -0.19 1.00 15 18 N -0.47 -5.65 10.33 -12.95 -0.13 -5.79 15 19 C 0.17 2.15 11.24 -17.31 -0.19 1.96 15 20 C -0.19 -3.03 6.45 -104.86 -0.68 -3.70 15 21 C 0.57 11.65 7.24 -12.53 -0.09 11.56 15 22 O -0.44 -10.01 16.07 5.41 0.09 -9.92 15 23 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 15 24 H 0.09 2.19 6.84 -51.93 -0.36 1.83 15 25 H 0.05 1.19 6.72 -51.93 -0.35 0.84 15 26 H 0.27 7.07 8.31 -40.82 -0.34 6.73 15 27 H 0.15 1.33 8.06 -52.49 -0.42 0.91 15 28 H 0.17 0.96 8.06 -52.49 -0.42 0.54 15 29 H 0.17 1.87 8.06 -52.49 -0.42 1.45 15 LS Contribution 264.53 15.07 3.99 3.99 Total: -1.00 -30.97 264.53 -5.46 -36.43 By element: Atomic # 1 Polarization: -0.71 SS G_CDS: -2.32 Total: -3.04 kcal Atomic # 6 Polarization: 11.11 SS G_CDS: -2.55 Total: 8.56 kcal Atomic # 7 Polarization: -42.48 SS G_CDS: 0.26 Total: -42.22 kcal Atomic # 8 Polarization: -20.23 SS G_CDS: 0.18 Total: -20.05 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -30.97 -5.46 -36.43 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070906516.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.909 kcal (2) G-P(sol) polarization free energy of solvation -30.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds