Wall clock time and date at job start Mon Mar 30 2020 03:56:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48494 * 109.47288 * 240.00094 * 3 2 1 5 5 H 1.48503 * 109.47086 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46819 * 119.99748 * 3 2 1 7 7 C 1.37870 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47238 * 180.02562 * 9 7 2 11 11 N 1.46496 * 109.47294 * 179.97438 * 10 9 7 12 12 C 1.34628 * 124.46125 * 89.99618 * 11 10 9 13 13 O 1.21412 * 125.75452 * 359.92869 * 12 11 10 14 14 C 1.47798 * 108.47941 * 179.97438 * 12 11 10 15 15 C 1.38512 * 135.50025 * 180.02562 * 14 12 11 16 16 C 1.38932 * 118.63317 * 179.97438 * 15 14 12 17 17 N 1.31774 * 121.20933 * 0.02562 * 16 15 14 18 18 C 1.32105 * 122.34229 * 359.96952 * 17 16 15 19 19 C 1.38579 * 120.25272 * 0.02562 * 18 17 16 20 20 C 1.34586 * 124.46059 * 269.70249 * 11 10 9 21 21 O 1.21451 * 125.66015 * 0.02562 * 20 11 10 22 22 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 24 24 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 25 25 H 1.09001 * 109.46832 * 299.99686 * 10 9 7 26 26 H 1.09004 * 109.47261 * 59.99705 * 10 9 7 27 27 H 1.08007 * 120.68421 * 359.94717 * 15 14 12 28 28 H 1.08004 * 119.39724 * 180.02562 * 16 15 14 29 29 H 1.08002 * 119.87148 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 7 1.5128 -4.9308 -0.0020 12 6 1.1323 -5.5903 -1.1123 13 8 1.3371 -5.2336 -2.2546 14 6 0.4223 -6.8212 -0.7058 15 6 -0.1854 -7.8755 -1.3676 16 6 -0.7684 -8.8869 -0.6144 17 7 -0.7502 -8.8544 0.7028 18 6 -0.1831 -7.8705 1.3778 19 6 0.4221 -6.8207 0.7054 20 6 1.1365 -5.5934 1.1074 21 8 1.3473 -5.2386 2.2497 22 1 -0.4849 0.8401 0.0004 23 1 0.6240 -2.5575 0.8880 24 1 0.6246 -2.5563 -0.8919 25 1 2.8725 -3.6039 -0.8910 26 1 2.8713 -3.6047 0.8890 27 1 -0.2059 -7.9103 -2.4469 28 1 -1.2452 -9.7151 -1.1177 29 1 -0.1911 -7.8844 2.4577 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070906521.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:56:28 Heat of formation + Delta-G solvation = -10.263224 kcal Electronic energy + Delta-G solvation = -16871.538201 eV Core-core repulsion = 13953.747097 eV Total energy + Delta-G solvation = -2917.791104 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.32250 -39.53856 -38.44169 -35.79086 -34.10980 -32.65382 -31.79118 -29.91449 -26.04653 -25.48390 -23.79320 -22.62552 -21.49364 -19.76352 -18.08603 -17.45816 -16.72531 -16.40291 -16.12168 -15.45070 -15.00222 -14.52838 -14.46380 -14.28266 -14.01013 -13.81324 -13.09580 -12.61699 -12.44861 -11.67802 -11.00177 -10.97545 -10.71135 -10.52812 -10.35156 -10.18878 -10.16688 -9.78807 -9.63243 -9.34318 -9.02992 -8.44807 -6.09490 -4.14269 -0.15629 0.55542 2.00234 2.55113 3.10375 3.30433 3.34494 3.37004 3.42961 3.49851 3.98250 4.25589 4.32020 4.40224 4.58534 4.86051 5.27052 5.29355 5.35806 5.49799 5.74332 5.81441 6.08627 6.16511 6.52322 6.87748 7.32836 7.41306 7.48392 7.57875 7.78994 7.89241 8.22225 8.90349 9.50362 11.02101 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.041571 B = 0.005327 C = 0.005079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.380934 B = 5255.212358 C = 5511.733572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.899 3.101 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.525 4.525 8 H 0.060 0.940 9 C 0.011 3.989 10 C 0.112 3.888 11 N -0.565 5.565 12 C 0.570 3.430 13 O -0.452 6.452 14 C -0.088 4.088 15 C -0.104 4.104 16 C 0.128 3.872 17 N -0.471 5.471 18 C 0.171 3.829 19 C -0.191 4.191 20 C 0.576 3.424 21 O -0.454 6.454 22 H 0.263 0.737 23 H 0.024 0.976 24 H 0.023 0.977 25 H 0.087 0.913 26 H 0.088 0.912 27 H 0.155 0.845 28 H 0.175 0.825 29 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.649 -17.458 -1.144 17.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.142 4.142 3 Si 0.727 3.273 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.564 4.564 8 H 0.078 0.922 9 C -0.027 4.027 10 C -0.005 4.005 11 N -0.306 5.306 12 C 0.356 3.644 13 O -0.322 6.322 14 C -0.099 4.099 15 C -0.125 4.125 16 C -0.032 4.032 17 N -0.179 5.179 18 C 0.017 3.983 19 C -0.197 4.197 20 C 0.362 3.638 21 O -0.324 6.324 22 H 0.073 0.927 23 H 0.042 0.958 24 H 0.041 0.959 25 H 0.105 0.895 26 H 0.106 0.894 27 H 0.173 0.827 28 H 0.192 0.808 29 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -0.896 -17.503 -0.663 17.539 hybrid contribution 0.724 1.703 -0.531 1.926 sum -0.172 -15.800 -1.194 15.846 Atomic orbital electron populations 1.69963 1.06174 1.27075 1.49748 1.25002 0.94899 0.99460 0.94816 0.86538 0.79502 0.82544 0.78746 1.20054 1.21184 1.20041 1.20935 0.93082 0.90196 1.52186 0.92180 1.19432 0.94246 0.90769 0.98214 1.22349 0.95785 0.78996 1.03414 1.46944 1.52419 1.24127 1.07118 1.18187 0.78257 0.83074 0.84849 1.90804 1.51916 1.70137 1.19306 1.21108 0.97973 0.96039 0.94808 1.21871 0.95829 0.92214 1.02588 1.23264 0.93592 0.96847 0.89448 1.67877 1.15668 1.24656 1.09730 1.22443 0.88809 0.86066 1.01022 1.21801 1.03724 0.98688 0.95465 1.18057 0.78059 0.82891 0.84754 1.90809 1.52110 1.70234 1.19285 0.92689 0.95801 0.95862 0.89497 0.89402 0.82748 0.80830 0.80776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.88 13.29 55.43 0.74 -26.14 15 2 C 0.06 1.73 5.46 -17.82 -0.10 1.64 15 3 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 15 4 H -0.28 -6.46 7.11 56.52 0.40 -6.05 15 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 15 6 H -0.27 -6.46 7.11 56.52 0.40 -6.06 15 7 C -0.53 -14.76 9.11 -34.44 -0.31 -15.07 15 8 H 0.06 1.60 7.74 -52.49 -0.41 1.19 15 9 C 0.01 0.29 5.30 -27.88 -0.15 0.14 15 10 C 0.11 2.35 5.69 -4.05 -0.02 2.33 15 11 N -0.57 -10.56 2.63 -117.67 -0.31 -10.87 15 12 C 0.57 9.88 8.03 -12.42 -0.10 9.79 15 13 O -0.45 -8.85 17.68 5.44 0.10 -8.76 15 14 C -0.09 -1.19 6.48 -104.79 -0.68 -1.87 15 15 C -0.10 -1.01 10.17 -39.22 -0.40 -1.41 15 16 C 0.13 1.06 11.19 -17.32 -0.19 0.87 15 17 N -0.47 -4.93 10.33 -12.95 -0.13 -5.06 15 18 C 0.17 1.93 11.24 -17.31 -0.19 1.74 15 19 C -0.19 -2.64 6.45 -104.86 -0.68 -3.32 15 20 C 0.58 10.05 8.01 -12.53 -0.10 9.95 15 21 O -0.45 -8.95 17.67 5.41 0.10 -8.85 15 22 H 0.26 7.48 8.31 -40.82 -0.34 7.14 15 23 H 0.02 0.67 8.14 -51.93 -0.42 0.25 15 24 H 0.02 0.65 8.14 -51.93 -0.42 0.23 15 25 H 0.09 1.75 7.97 -51.93 -0.41 1.34 15 26 H 0.09 1.77 7.96 -51.93 -0.41 1.36 15 27 H 0.15 1.12 8.06 -52.48 -0.42 0.69 15 28 H 0.17 0.75 8.06 -52.48 -0.42 0.32 15 29 H 0.18 1.59 8.06 -52.49 -0.42 1.16 15 LS Contribution 272.01 15.07 4.10 4.10 Total: -1.00 -33.21 272.01 -5.84 -39.05 By element: Atomic # 1 Polarization: -2.34 SS G_CDS: -2.48 Total: -4.82 kcal Atomic # 6 Polarization: 7.71 SS G_CDS: -2.92 Total: 4.79 kcal Atomic # 7 Polarization: -42.36 SS G_CDS: 0.29 Total: -42.07 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: 0.19 Total: -17.61 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -33.21 -5.84 -39.05 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070906521.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.792 kcal (2) G-P(sol) polarization free energy of solvation -33.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds