Wall clock time and date at job start Mon Mar 30 2020 03:56:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48494 * 109.47288 * 240.00094 * 3 2 1 5 5 H 1.48503 * 109.47086 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46819 * 119.99748 * 3 2 1 7 7 C 1.37870 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47238 * 180.02562 * 9 7 2 11 11 N 1.46496 * 109.47294 * 179.97438 * 10 9 7 12 12 C 1.34628 * 124.46125 * 89.99618 * 11 10 9 13 13 O 1.21412 * 125.75452 * 359.92869 * 12 11 10 14 14 C 1.47798 * 108.47941 * 179.97438 * 12 11 10 15 15 C 1.38512 * 135.50025 * 180.02562 * 14 12 11 16 16 C 1.38932 * 118.63317 * 179.97438 * 15 14 12 17 17 N 1.31774 * 121.20933 * 0.02562 * 16 15 14 18 18 C 1.32105 * 122.34229 * 359.96952 * 17 16 15 19 19 C 1.38579 * 120.25272 * 0.02562 * 18 17 16 20 20 C 1.34586 * 124.46059 * 269.70249 * 11 10 9 21 21 O 1.21451 * 125.66015 * 0.02562 * 20 11 10 22 22 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 24 24 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 25 25 H 1.09001 * 109.46832 * 299.99686 * 10 9 7 26 26 H 1.09004 * 109.47261 * 59.99705 * 10 9 7 27 27 H 1.08007 * 120.68421 * 359.94717 * 15 14 12 28 28 H 1.08004 * 119.39724 * 180.02562 * 16 15 14 29 29 H 1.08002 * 119.87148 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 7 1.5128 -4.9308 -0.0020 12 6 1.1323 -5.5903 -1.1123 13 8 1.3371 -5.2336 -2.2546 14 6 0.4223 -6.8212 -0.7058 15 6 -0.1854 -7.8755 -1.3676 16 6 -0.7684 -8.8869 -0.6144 17 7 -0.7502 -8.8544 0.7028 18 6 -0.1831 -7.8705 1.3778 19 6 0.4221 -6.8207 0.7054 20 6 1.1365 -5.5934 1.1074 21 8 1.3473 -5.2386 2.2497 22 1 -0.4849 0.8401 0.0004 23 1 0.6240 -2.5575 0.8880 24 1 0.6246 -2.5563 -0.8919 25 1 2.8725 -3.6039 -0.8910 26 1 2.8713 -3.6047 0.8890 27 1 -0.2059 -7.9103 -2.4469 28 1 -1.2452 -9.7151 -1.1177 29 1 -0.1911 -7.8844 2.4577 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070906521.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:56:27 Heat of formation + Delta-G solvation = -33.501763 kcal Electronic energy + Delta-G solvation = -16872.545900 eV Core-core repulsion = 13953.747097 eV Total energy + Delta-G solvation = -2918.798803 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -43.57109 -40.55503 -39.87188 -37.28046 -35.87083 -34.27037 -32.76024 -31.59948 -27.74681 -26.65717 -25.26834 -23.78845 -23.21616 -21.10074 -19.23650 -19.00938 -18.36425 -17.73387 -17.41703 -16.65174 -16.55935 -16.32496 -15.56394 -15.28900 -15.25230 -15.02885 -14.95238 -14.41988 -13.75497 -13.43530 -12.89655 -12.82302 -12.22767 -12.15812 -11.98829 -11.78971 -11.45199 -11.36862 -10.82894 -10.75915 -10.65411 -10.45831 -8.29492 -6.43438 -1.24728 -0.30717 0.85106 1.17340 1.39058 1.42787 1.50692 1.74645 2.36693 2.39064 2.55598 2.98602 3.04856 3.29949 3.38003 3.71868 4.02217 4.13122 4.23766 4.34634 4.42082 4.60375 4.62453 4.72009 5.21013 5.27849 5.33048 5.61486 5.65793 5.98364 6.00993 6.42974 6.59169 6.71089 7.26956 8.83253 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.041571 B = 0.005327 C = 0.005079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.380934 B = 5255.212358 C = 5511.733572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.001 3.999 3 Si 0.976 3.024 4 H -0.263 1.263 5 H -0.282 1.282 6 H -0.263 1.263 7 C -0.548 4.548 8 H 0.073 0.927 9 C 0.022 3.978 10 C 0.126 3.874 11 N -0.579 5.579 12 C 0.567 3.433 13 O -0.484 6.484 14 C -0.102 4.102 15 C -0.086 4.086 16 C 0.155 3.845 17 N -0.476 5.476 18 C 0.183 3.817 19 C -0.210 4.210 20 C 0.573 3.427 21 O -0.489 6.489 22 H 0.266 0.734 23 H -0.010 1.010 24 H -0.009 1.009 25 H 0.094 0.906 26 H 0.094 0.906 27 H 0.185 0.815 28 H 0.227 0.773 29 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.747 -19.384 -1.778 19.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.799 3.201 4 H -0.187 1.187 5 H -0.208 1.208 6 H -0.188 1.188 7 C -0.586 4.586 8 H 0.091 0.909 9 C -0.016 4.016 10 C 0.007 3.993 11 N -0.320 5.320 12 C 0.356 3.644 13 O -0.356 6.356 14 C -0.113 4.113 15 C -0.106 4.106 16 C -0.005 4.005 17 N -0.185 5.185 18 C 0.030 3.970 19 C -0.215 4.215 20 C 0.363 3.637 21 O -0.362 6.362 22 H 0.075 0.925 23 H 0.009 0.991 24 H 0.009 0.991 25 H 0.112 0.888 26 H 0.112 0.888 27 H 0.202 0.798 28 H 0.243 0.757 29 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -0.992 -19.466 -1.287 19.534 hybrid contribution 0.656 2.150 -0.387 2.281 sum -0.336 -17.316 -1.674 17.399 Atomic orbital electron populations 1.70113 1.08111 1.28257 1.50718 1.26066 0.95830 1.03815 0.94058 0.85341 0.78146 0.77148 0.79474 1.18749 1.20780 1.18806 1.21431 0.93991 0.91174 1.52022 0.90854 1.19206 0.94436 0.92990 0.94953 1.21894 0.94580 0.78819 1.04021 1.46951 1.52818 1.23624 1.08590 1.18761 0.77610 0.84047 0.83932 1.90771 1.53334 1.71310 1.20206 1.20900 0.99820 0.95866 0.94758 1.22353 0.93549 0.90493 1.04254 1.24152 0.90927 0.96861 0.88576 1.68052 1.15554 1.23916 1.10939 1.22731 0.87320 0.85007 1.01955 1.21464 1.06003 0.98373 0.95702 1.18620 0.77412 0.83804 0.83869 1.90772 1.53689 1.71452 1.20304 0.92496 0.99122 0.99072 0.88763 0.88810 0.79761 0.75670 0.79123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.00 13.29 21.45 0.28 -57.71 15 2 C 0.00 0.05 5.46 84.65 0.46 0.51 15 3 Si 0.98 44.55 29.54 68.60 2.03 46.58 15 4 H -0.26 -11.42 7.11 99.48 0.71 -10.72 15 5 H -0.28 -12.62 7.11 99.48 0.71 -11.92 15 6 H -0.26 -11.48 7.11 99.48 0.71 -10.77 15 7 C -0.55 -31.65 9.11 25.60 0.23 -31.41 15 8 H 0.07 3.93 7.74 -2.91 -0.02 3.91 15 9 C 0.02 1.22 5.30 29.85 0.16 1.38 15 10 C 0.13 5.55 5.69 86.38 0.49 6.04 15 11 N -0.58 -22.65 2.63 -763.04 -2.00 -24.66 15 12 C 0.57 20.16 8.03 86.80 0.70 20.86 15 13 O -0.48 -19.48 17.68 -3.44 -0.06 -19.54 15 14 C -0.10 -2.65 6.48 -19.98 -0.13 -2.78 15 15 C -0.09 -1.34 10.17 22.50 0.23 -1.11 15 16 C 0.15 1.76 11.19 84.87 0.95 2.71 15 17 N -0.48 -8.09 10.33 -194.87 -2.01 -10.11 15 18 C 0.18 3.75 11.24 84.73 0.95 4.70 15 19 C -0.21 -5.68 6.45 -20.02 -0.13 -5.81 15 20 C 0.57 20.82 8.01 86.74 0.69 21.51 15 21 O -0.49 -20.22 17.67 -3.56 -0.06 -20.29 15 22 H 0.27 15.49 8.31 -92.71 -0.77 14.72 15 23 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 15 24 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 15 25 H 0.09 3.95 7.97 -2.39 -0.02 3.93 15 26 H 0.09 3.96 7.96 -2.38 -0.02 3.94 15 27 H 0.19 1.80 8.06 -2.91 -0.02 1.78 15 28 H 0.23 0.29 8.06 -2.91 -0.02 0.27 15 29 H 0.19 3.13 8.06 -2.91 -0.02 3.11 15 Total: -1.00 -76.01 272.01 3.96 -72.05 By element: Atomic # 1 Polarization: -4.10 SS G_CDS: 1.18 Total: -2.92 kcal Atomic # 6 Polarization: 11.98 SS G_CDS: 4.61 Total: 16.59 kcal Atomic # 7 Polarization: -88.74 SS G_CDS: -3.73 Total: -92.47 kcal Atomic # 8 Polarization: -39.70 SS G_CDS: -0.12 Total: -39.83 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -76.01 3.96 -72.05 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070906521.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.545 kcal (2) G-P(sol) polarization free energy of solvation -76.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds