Wall clock time and date at job start Mon Mar 30 2020 04:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35900 * 117.00268 * 2 1 4 4 C 1.38857 * 119.98524 * 0.02562 * 3 2 1 5 5 C 1.38244 * 120.23670 * 180.02562 * 4 3 2 6 6 C 1.38015 * 120.20134 * 359.97438 * 5 4 3 7 7 C 1.39550 * 119.96600 * 359.72290 * 6 5 4 8 8 C 1.47868 * 120.11323 * 180.27443 * 7 6 5 9 9 N 1.31719 * 126.42744 * 359.97438 * 8 7 6 10 10 C 1.35558 * 105.52903 * 179.85750 * 9 8 7 11 11 C 1.41786 * 126.44911 * 180.14398 * 10 9 8 12 12 H 1.08007 * 119.99561 * 0.27707 * 11 10 9 13 13 C 1.39941 * 120.00305 * 180.27933 * 11 10 9 14 14 N 1.30755 * 119.99855 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 119.99829 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47394 * 59.99819 * 15 13 11 17 17 H 1.48502 * 109.47242 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47090 * 299.99450 * 15 13 11 19 19 N 1.31925 * 107.10918 * 0.40058 * 10 9 8 20 20 O 1.21269 * 110.10256 * 359.74467 * 19 10 9 21 21 C 1.38458 * 119.98814 * 180.02562 * 3 2 1 22 22 H 1.09000 * 109.46819 * 300.00429 * 1 2 3 23 23 H 1.09002 * 109.46827 * 60.00386 * 1 2 3 24 24 H 1.08999 * 109.47437 * 179.97438 * 1 2 3 25 25 H 1.08004 * 119.88422 * 0.02562 * 4 3 2 26 26 H 1.07995 * 119.89579 * 180.02562 * 5 4 3 27 27 H 1.07996 * 120.01176 * 180.02562 * 6 5 4 28 28 H 0.96996 * 119.99894 * 179.97438 * 14 13 11 29 29 H 1.08002 * 120.09639 * 359.96926 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2896 2.3752 0.0005 5 6 1.9118 3.6097 0.0000 6 6 3.2895 3.6928 -0.0005 7 6 4.0580 2.5280 0.0053 8 6 5.5342 2.6132 0.0109 9 7 6.2540 3.7163 0.0105 10 6 7.5461 3.3066 0.0201 11 6 8.6938 4.1391 0.0263 12 1 8.5816 5.2133 0.0281 13 6 9.9718 3.5690 0.0301 14 7 10.1076 2.2685 0.0284 15 14 11.4838 4.6660 0.0391 16 1 11.4684 5.5203 1.2536 17 1 12.7066 3.8234 0.0414 18 1 11.4784 5.5262 -1.1714 19 7 7.5350 1.9874 0.0168 20 8 6.3927 1.5802 0.0116 21 6 3.4288 1.2830 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 0.2111 2.3163 0.0014 26 1 1.3181 4.5118 0.0008 27 1 3.7724 4.6587 -0.0005 28 1 10.9934 1.8734 0.0307 29 1 4.0183 0.3780 -0.0005 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071519213.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:17 Heat of formation + Delta-G solvation = 47.057543 kcal Electronic energy + Delta-G solvation = -16566.163987 eV Core-core repulsion = 13650.858498 eV Total energy + Delta-G solvation = -2915.305489 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.26397 -39.98125 -37.37377 -34.48067 -33.18164 -31.79872 -30.41551 -28.90305 -27.35488 -26.49809 -23.36395 -22.62191 -21.33463 -20.60211 -18.41827 -16.96070 -16.16541 -16.09024 -15.83432 -15.75072 -15.64158 -14.81302 -14.10097 -13.72313 -13.33352 -12.99671 -12.73212 -12.24009 -11.63909 -11.34764 -11.30619 -11.23829 -11.07900 -10.80872 -10.44527 -10.34788 -10.17000 -9.68990 -9.14229 -8.85680 -8.23161 -7.76677 -6.64128 -4.66307 1.07308 1.56250 2.94547 3.07122 3.11125 3.14502 3.20654 3.91791 3.97484 4.11980 4.17297 4.78941 4.96329 5.02019 5.03846 5.29766 5.31222 5.32784 5.49713 5.53587 5.71066 6.10620 6.29664 6.43512 6.53757 6.69548 6.76476 6.96630 7.24608 7.40779 7.67061 8.27514 8.47331 8.82577 10.26220 10.39124 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.061144 B = 0.004648 C = 0.004329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 457.824390 B = 6023.105691 C = 6465.773827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.317 6.317 3 C 0.122 3.878 4 C -0.205 4.205 5 C -0.084 4.084 6 C -0.114 4.114 7 C 0.052 3.948 8 C 0.146 3.854 9 N -0.501 5.501 10 C 0.291 3.709 11 C -0.434 4.434 12 H 0.093 0.907 13 C 0.069 3.931 14 N -0.773 5.773 15 Si 0.926 3.074 16 H -0.265 1.265 17 H -0.278 1.278 18 H -0.265 1.265 19 N -0.416 5.416 20 O 0.032 5.968 21 C -0.127 4.127 22 H 0.054 0.946 23 H 0.054 0.946 24 H 0.097 0.903 25 H 0.127 0.873 26 H 0.129 0.871 27 H 0.139 0.861 28 H 0.279 0.721 29 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.944 -1.035 -0.036 15.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.231 6.231 3 C 0.077 3.923 4 C -0.224 4.224 5 C -0.102 4.102 6 C -0.134 4.134 7 C 0.049 3.951 8 C -0.073 4.073 9 N -0.242 5.242 10 C 0.039 3.961 11 C -0.475 4.475 12 H 0.111 0.889 13 C -0.152 4.152 14 N -0.402 5.402 15 Si 0.750 3.250 16 H -0.189 1.189 17 H -0.203 1.203 18 H -0.189 1.189 19 N -0.141 5.141 20 O -0.012 6.012 21 C -0.148 4.148 22 H 0.073 0.927 23 H 0.073 0.927 24 H 0.116 0.884 25 H 0.145 0.855 26 H 0.147 0.853 27 H 0.157 0.843 28 H 0.090 0.910 29 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -14.981 -1.531 -0.039 15.059 hybrid contribution 0.388 0.517 0.005 0.646 sum -14.593 -1.014 -0.034 14.628 Atomic orbital electron populations 1.23025 0.78685 1.03726 1.01229 1.86082 1.21092 1.26872 1.89014 1.18715 0.91773 0.84178 0.97606 1.21271 0.99814 0.92385 1.08944 1.20815 0.94061 0.96987 0.98382 1.21182 0.93108 0.98363 1.00789 1.17068 0.85610 0.93112 0.99274 1.25786 0.93507 0.84693 1.03283 1.72178 1.03224 1.26277 1.22554 1.22257 0.89980 0.87597 0.96231 1.18391 0.86672 0.93643 1.48758 0.88921 1.25856 1.00691 0.95515 0.93137 1.69860 1.25304 1.10830 1.34169 0.86085 0.79112 0.79947 0.79836 1.18912 1.20322 1.18921 1.75599 0.92914 1.13422 1.32179 1.85333 1.12308 1.35614 1.67971 1.20460 0.91540 0.98084 1.04690 0.92735 0.92744 0.88422 0.85526 0.85308 0.84346 0.91011 0.84182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 15 2 O -0.32 -4.09 10.49 -19.43 -0.20 -4.29 15 3 C 0.12 1.73 6.68 -39.27 -0.26 1.47 15 4 C -0.20 -2.47 9.03 -39.35 -0.36 -2.82 15 5 C -0.08 -1.06 10.03 -39.66 -0.40 -1.46 15 6 C -0.11 -1.85 9.70 -39.17 -0.38 -2.23 15 7 C 0.05 0.98 5.87 -105.00 -0.62 0.36 15 8 C 0.15 3.50 7.99 -13.80 -0.11 3.39 15 9 N -0.50 -13.37 11.27 -11.39 -0.13 -13.50 15 10 C 0.29 8.61 7.67 -157.66 -1.21 7.40 15 11 C -0.43 -12.48 9.52 -37.59 -0.36 -12.83 15 12 H 0.09 2.51 7.85 -52.48 -0.41 2.10 15 13 C 0.07 1.88 5.49 -17.37 -0.10 1.78 15 14 N -0.77 -22.05 11.97 55.54 0.67 -21.38 15 15 Si 0.93 19.74 29.56 -169.99 -5.02 14.72 15 16 H -0.26 -5.50 7.11 56.52 0.40 -5.10 15 17 H -0.28 -5.74 7.11 56.52 0.40 -5.34 15 18 H -0.26 -5.51 7.11 56.52 0.40 -5.10 15 19 N -0.42 -12.42 10.46 30.29 0.32 -12.11 15 20 O 0.03 0.85 11.09 16.35 0.18 1.03 15 21 C -0.13 -2.13 9.66 -39.03 -0.38 -2.51 15 22 H 0.05 0.37 7.66 -51.93 -0.40 -0.03 15 23 H 0.05 0.37 7.66 -51.93 -0.40 -0.03 15 24 H 0.10 0.58 8.14 -51.93 -0.42 0.15 15 25 H 0.13 1.12 6.28 -52.48 -0.33 0.79 15 26 H 0.13 1.22 8.06 -52.49 -0.42 0.79 15 27 H 0.14 2.28 7.86 -52.49 -0.41 1.87 15 28 H 0.28 7.21 8.29 -40.82 -0.34 6.88 15 29 H 0.14 2.34 7.94 -52.49 -0.42 1.93 15 LS Contribution 267.35 15.07 4.03 4.03 Total: -1.00 -33.14 267.35 -5.68 -38.83 By element: Atomic # 1 Polarization: 1.25 SS G_CDS: -2.35 Total: -1.09 kcal Atomic # 6 Polarization: -3.06 SS G_CDS: -3.17 Total: -6.23 kcal Atomic # 7 Polarization: -47.84 SS G_CDS: 0.85 Total: -46.99 kcal Atomic # 8 Polarization: -3.24 SS G_CDS: -0.02 Total: -3.26 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.02 Total: 14.72 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -33.14 -5.68 -38.83 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071519213.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.883 kcal (2) G-P(sol) polarization free energy of solvation -33.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds