Wall clock time and date at job start Mon Mar 30 2020 04:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35900 * 117.00268 * 2 1 4 4 C 1.38857 * 119.98524 * 0.02562 * 3 2 1 5 5 C 1.38244 * 120.23670 * 180.02562 * 4 3 2 6 6 C 1.38015 * 120.20134 * 359.97438 * 5 4 3 7 7 C 1.39550 * 119.96600 * 359.72290 * 6 5 4 8 8 C 1.47868 * 120.11323 * 180.27443 * 7 6 5 9 9 N 1.31719 * 126.42744 * 359.97438 * 8 7 6 10 10 C 1.35558 * 105.52903 * 179.85750 * 9 8 7 11 11 C 1.41786 * 126.44911 * 180.14398 * 10 9 8 12 12 H 1.08007 * 119.99561 * 0.27707 * 11 10 9 13 13 C 1.39941 * 120.00305 * 180.27933 * 11 10 9 14 14 N 1.30755 * 119.99855 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 119.99829 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47394 * 59.99819 * 15 13 11 17 17 H 1.48502 * 109.47242 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47090 * 299.99450 * 15 13 11 19 19 N 1.31925 * 107.10918 * 0.40058 * 10 9 8 20 20 O 1.21269 * 110.10256 * 359.74467 * 19 10 9 21 21 C 1.38458 * 119.98814 * 180.02562 * 3 2 1 22 22 H 1.09000 * 109.46819 * 300.00429 * 1 2 3 23 23 H 1.09002 * 109.46827 * 60.00386 * 1 2 3 24 24 H 1.08999 * 109.47437 * 179.97438 * 1 2 3 25 25 H 1.08004 * 119.88422 * 0.02562 * 4 3 2 26 26 H 1.07995 * 119.89579 * 180.02562 * 5 4 3 27 27 H 1.07996 * 120.01176 * 180.02562 * 6 5 4 28 28 H 0.96996 * 119.99894 * 179.97438 * 14 13 11 29 29 H 1.08002 * 120.09639 * 359.96926 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2896 2.3752 0.0005 5 6 1.9118 3.6097 0.0000 6 6 3.2895 3.6928 -0.0005 7 6 4.0580 2.5280 0.0053 8 6 5.5342 2.6132 0.0109 9 7 6.2540 3.7163 0.0105 10 6 7.5461 3.3066 0.0201 11 6 8.6938 4.1391 0.0263 12 1 8.5816 5.2133 0.0281 13 6 9.9718 3.5690 0.0301 14 7 10.1076 2.2685 0.0284 15 14 11.4838 4.6660 0.0391 16 1 11.4684 5.5203 1.2536 17 1 12.7066 3.8234 0.0414 18 1 11.4784 5.5262 -1.1714 19 7 7.5350 1.9874 0.0168 20 8 6.3927 1.5802 0.0116 21 6 3.4288 1.2830 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 0.2111 2.3163 0.0014 26 1 1.3181 4.5118 0.0008 27 1 3.7724 4.6587 -0.0005 28 1 10.9934 1.8734 0.0307 29 1 4.0183 0.3780 -0.0005 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071519213.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:17 Heat of formation + Delta-G solvation = 22.957333 kcal Electronic energy + Delta-G solvation = -16567.209050 eV Core-core repulsion = 13650.858498 eV Total energy + Delta-G solvation = -2916.350553 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -45.33217 -41.04745 -38.48667 -36.54679 -35.14924 -33.39496 -31.66339 -30.50238 -28.70867 -28.05221 -24.88290 -24.24966 -22.96183 -22.22720 -19.88499 -18.58907 -18.24051 -17.75348 -17.15058 -16.84532 -16.60146 -16.55172 -15.79520 -14.89902 -14.76202 -14.42829 -13.81550 -13.35516 -13.21962 -13.13210 -12.93159 -12.73797 -12.39419 -12.37848 -12.06384 -12.02057 -11.85006 -11.38795 -11.23298 -10.61812 -9.66309 -9.20071 -8.67538 -6.85378 -0.29840 0.40649 1.17744 1.36698 1.40879 1.53448 2.01530 2.17257 2.21301 2.51053 2.77993 3.18590 3.46641 3.83931 4.06604 4.20836 4.29941 4.44480 4.49957 4.50056 4.52488 4.78504 4.84610 4.95713 5.16664 5.23246 5.38992 5.45004 5.64990 5.68313 6.11935 6.37101 6.43948 6.70194 8.22725 8.37088 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.061144 B = 0.004648 C = 0.004329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 457.824390 B = 6023.105691 C = 6465.773827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.336 6.336 3 C 0.125 3.875 4 C -0.178 4.178 5 C -0.068 4.068 6 C -0.120 4.120 7 C 0.011 3.989 8 C 0.169 3.831 9 N -0.526 5.526 10 C 0.262 3.738 11 C -0.467 4.467 12 H 0.099 0.901 13 C 0.020 3.980 14 N -0.813 5.813 15 Si 1.014 2.986 16 H -0.254 1.254 17 H -0.265 1.265 18 H -0.254 1.254 19 N -0.459 5.459 20 O 0.016 5.984 21 C -0.140 4.140 22 H 0.072 0.928 23 H 0.072 0.928 24 H 0.117 0.883 25 H 0.173 0.827 26 H 0.174 0.826 27 H 0.129 0.871 28 H 0.288 0.712 29 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.439 0.038 -0.035 18.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.250 6.250 3 C 0.079 3.921 4 C -0.197 4.197 5 C -0.086 4.086 6 C -0.140 4.140 7 C 0.009 3.991 8 C -0.049 4.049 9 N -0.266 5.266 10 C 0.011 3.989 11 C -0.507 4.507 12 H 0.117 0.883 13 C -0.198 4.198 14 N -0.441 5.441 15 Si 0.832 3.168 16 H -0.177 1.177 17 H -0.190 1.190 18 H -0.178 1.178 19 N -0.189 5.189 20 O -0.024 6.024 21 C -0.161 4.161 22 H 0.090 0.910 23 H 0.090 0.910 24 H 0.135 0.865 25 H 0.191 0.809 26 H 0.191 0.809 27 H 0.147 0.853 28 H 0.098 0.902 29 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -17.541 -0.476 -0.038 17.547 hybrid contribution 0.805 0.084 0.003 0.809 sum -16.736 -0.392 -0.035 16.741 Atomic orbital electron populations 1.23446 0.75769 1.05819 1.02875 1.86078 1.24050 1.26248 1.88636 1.18723 0.90828 0.85763 0.96770 1.21787 1.01932 0.90922 1.05028 1.21251 0.92350 0.99082 0.95887 1.21271 0.94833 0.96829 1.01116 1.17166 0.82708 0.95285 1.03982 1.26765 0.95521 0.83359 0.99281 1.72140 1.02535 1.27219 1.24753 1.22784 0.91374 0.88113 0.96630 1.18881 0.87763 0.94083 1.50020 0.88334 1.27089 1.03967 0.97175 0.91521 1.69980 1.26771 1.13153 1.34245 0.84799 0.73935 0.77626 0.80457 1.17748 1.18956 1.17766 1.75544 0.94487 1.13868 1.35000 1.85229 1.12101 1.36106 1.69011 1.20386 0.93286 0.96758 1.05653 0.90958 0.90964 0.86487 0.80929 0.80909 0.85323 0.90192 0.85636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 9.81 113.37 1.11 1.28 15 2 O -0.34 -7.80 10.49 -92.43 -0.97 -8.77 15 3 C 0.12 3.25 6.68 22.47 0.15 3.40 15 4 C -0.18 -3.44 9.03 22.42 0.20 -3.23 15 5 C -0.07 -1.44 10.03 22.22 0.22 -1.21 15 6 C -0.12 -3.78 9.70 22.53 0.22 -3.56 15 7 C 0.01 0.42 5.87 -20.11 -0.12 0.30 15 8 C 0.17 8.61 7.99 87.31 0.70 9.31 15 9 N -0.53 -29.66 11.27 -305.32 -3.44 -33.10 15 10 C 0.26 16.43 7.67 135.01 1.04 17.47 15 11 C -0.47 -27.98 9.52 23.56 0.22 -27.75 15 12 H 0.10 5.53 7.85 -2.91 -0.02 5.51 15 13 C 0.02 1.09 5.49 85.27 0.47 1.56 15 14 N -0.81 -47.96 11.97 21.82 0.26 -47.70 15 15 Si 1.01 40.70 29.56 68.60 2.03 42.73 15 16 H -0.25 -9.67 7.11 99.48 0.71 -8.96 15 17 H -0.27 -9.99 7.11 99.48 0.71 -9.29 15 18 H -0.25 -9.68 7.11 99.48 0.71 -8.97 15 19 N -0.46 -29.22 10.46 -59.75 -0.62 -29.84 15 20 O 0.02 0.92 11.09 68.57 0.76 1.68 15 21 C -0.14 -4.76 9.66 22.63 0.22 -4.55 15 22 H 0.07 0.61 7.66 -2.39 -0.02 0.59 15 23 H 0.07 0.61 7.66 -2.39 -0.02 0.59 15 24 H 0.12 0.92 8.14 -2.39 -0.02 0.90 15 25 H 0.17 1.83 6.28 -2.91 -0.02 1.81 15 26 H 0.17 2.21 8.06 -2.91 -0.02 2.18 15 27 H 0.13 4.25 7.86 -2.91 -0.02 4.22 15 28 H 0.29 15.24 8.29 -92.71 -0.77 14.47 15 29 H 0.13 4.49 7.94 -2.91 -0.02 4.47 15 Total: -1.00 -78.07 267.35 3.63 -74.44 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: 1.19 Total: 7.54 kcal Atomic # 6 Polarization: -11.41 SS G_CDS: 4.43 Total: -6.98 kcal Atomic # 7 Polarization: -106.84 SS G_CDS: -3.81 Total: -110.65 kcal Atomic # 8 Polarization: -6.87 SS G_CDS: -0.21 Total: -7.08 kcal Atomic # 14 Polarization: 40.70 SS G_CDS: 2.03 Total: 42.73 kcal Total: -78.07 3.63 -74.44 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071519213.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.396 kcal (2) G-P(sol) polarization free energy of solvation -78.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds