Wall clock time and date at job start Mon Mar 30 2020 04:01:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35783 * 116.99709 * 2 1 4 4 C 1.38945 * 119.90654 * 180.02562 * 3 2 1 5 5 C 1.37763 * 120.08234 * 180.02562 * 4 3 2 6 6 C 1.39677 * 119.91422 * 359.97438 * 5 4 3 7 7 C 1.47695 * 120.08647 * 179.97438 * 6 5 4 8 8 N 1.31806 * 126.43644 * 180.34324 * 7 6 5 9 9 C 1.35546 * 105.51955 * 180.13766 * 8 7 6 10 10 C 1.41788 * 126.43783 * 179.84707 * 9 8 7 11 11 H 1.08002 * 120.00370 * 359.72053 * 10 9 8 12 12 C 1.39942 * 120.00023 * 179.43692 * 10 9 8 13 13 N 1.30764 * 119.99541 * 0.28033 * 12 10 9 14 14 Si 1.86794 * 119.99988 * 180.27460 * 12 10 9 15 15 H 1.48499 * 109.47074 * 60.00891 * 14 12 10 16 16 H 1.48504 * 109.46887 * 180.02562 * 14 12 10 17 17 H 1.48493 * 109.47446 * 300.00595 * 14 12 10 18 18 N 1.31917 * 107.12188 * 359.58617 * 9 8 7 19 19 O 1.21267 * 110.12597 * 0.26555 * 18 9 8 20 20 C 1.39668 * 119.82620 * 0.25155 * 6 5 4 21 21 C 1.37766 * 119.90650 * 359.46836 * 20 6 5 22 22 H 1.08994 * 109.47138 * 299.99920 * 1 2 3 23 23 H 1.09002 * 109.46944 * 59.99897 * 1 2 3 24 24 H 1.09001 * 109.46825 * 179.97438 * 1 2 3 25 25 H 1.07997 * 119.95940 * 359.97438 * 4 3 2 26 26 H 1.08007 * 120.04582 * 180.02562 * 5 4 3 27 27 H 0.97005 * 119.99645 * 179.97438 * 13 12 10 28 28 H 1.07995 * 120.04749 * 179.75033 * 20 6 5 29 29 H 1.08007 * 119.95534 * 180.24866 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2099 0.0000 4 6 3.4330 1.2804 -0.0005 5 6 4.0622 2.5060 0.0000 6 6 3.3032 3.6786 0.0005 7 6 3.9738 4.9945 0.0017 8 7 3.3844 6.1734 0.0086 9 6 4.3903 7.0819 0.0036 10 6 4.2509 8.4929 0.0048 11 1 3.2670 8.9383 0.0057 12 6 5.3881 9.3084 0.0109 13 7 6.5793 8.7691 0.0100 14 14 5.2043 11.1673 0.0203 15 1 4.4572 11.5847 1.2339 16 1 6.5489 11.7976 0.0252 17 1 4.4609 11.5974 -1.1910 18 7 5.5235 6.4065 0.0030 19 8 5.2990 5.2148 0.0019 20 6 1.9086 3.6034 0.0059 21 6 1.2870 2.3739 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 4.0192 0.3733 -0.0005 26 1 5.1409 2.5601 -0.0008 27 1 7.3676 9.3344 0.0138 28 1 1.3183 4.5077 0.0104 29 1 0.2085 2.3149 -0.0005 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071519214.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:19 Heat of formation + Delta-G solvation = 45.734454 kcal Electronic energy + Delta-G solvation = -16505.740658 eV Core-core repulsion = 13590.377795 eV Total energy + Delta-G solvation = -2915.362863 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.21468 -40.03019 -37.41440 -34.45445 -33.12147 -31.37158 -31.03314 -28.86756 -27.28975 -26.50373 -23.18995 -22.59372 -21.39999 -20.57806 -18.24369 -17.66489 -16.12482 -16.01882 -15.92128 -15.81105 -15.30863 -14.56975 -14.13587 -13.66035 -13.32120 -13.01741 -12.74338 -12.30912 -11.96629 -11.38818 -11.32324 -11.29319 -10.94034 -10.78689 -10.41072 -10.29084 -10.14758 -9.46840 -9.10598 -8.94866 -8.58436 -7.53205 -6.63045 -4.64789 1.16578 1.46614 2.96088 3.07496 3.11184 3.14658 3.19029 3.92298 3.97917 4.16665 4.18750 4.79688 4.89656 4.99962 5.00096 5.26481 5.28998 5.32953 5.48511 5.63078 5.75533 6.12972 6.20083 6.36564 6.56992 6.73644 6.75172 6.96889 7.25700 7.35087 7.71533 8.28800 8.49898 8.84126 10.29208 10.41368 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.065827 B = 0.004450 C = 0.004177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 425.256454 B = 6290.967299 C = 6701.073495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.319 6.319 3 C 0.128 3.872 4 C -0.153 4.153 5 C -0.055 4.055 6 C -0.026 4.026 7 C 0.154 3.846 8 N -0.509 5.509 9 C 0.292 3.708 10 C -0.434 4.434 11 H 0.092 0.908 12 C 0.069 3.931 13 N -0.774 5.774 14 Si 0.926 3.074 15 H -0.265 1.265 16 H -0.278 1.278 17 H -0.265 1.265 18 N -0.419 5.419 19 O 0.027 5.973 20 C -0.038 4.038 21 C -0.211 4.211 22 H 0.056 0.944 23 H 0.056 0.944 24 H 0.097 0.903 25 H 0.134 0.866 26 H 0.140 0.860 27 H 0.279 0.721 28 H 0.139 0.861 29 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.849 -13.021 -0.010 15.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.232 6.232 3 C 0.082 3.918 4 C -0.171 4.171 5 C -0.075 4.075 6 C -0.029 4.029 7 C -0.065 4.065 8 N -0.251 5.251 9 C 0.040 3.960 10 C -0.475 4.475 11 H 0.110 0.890 12 C -0.152 4.152 13 N -0.402 5.402 14 Si 0.750 3.250 15 H -0.190 1.190 16 H -0.203 1.203 17 H -0.189 1.189 18 N -0.146 5.146 19 O -0.016 6.016 20 C -0.058 4.058 21 C -0.229 4.229 22 H 0.074 0.926 23 H 0.074 0.926 24 H 0.116 0.884 25 H 0.152 0.848 26 H 0.158 0.842 27 H 0.089 0.911 28 H 0.157 0.843 29 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -8.076 -12.616 -0.001 14.979 hybrid contribution -0.294 0.953 0.006 0.997 sum -8.370 -11.663 0.005 14.356 Atomic orbital electron populations 1.23051 0.78531 1.03711 1.01553 1.86021 1.21315 1.27168 1.88694 1.19175 0.92381 0.83989 0.96271 1.20254 0.91122 0.98324 1.07420 1.21105 1.00534 0.90233 0.95594 1.17300 0.92368 0.87332 1.05870 1.25826 0.84017 0.94229 1.02408 1.72198 1.31688 0.97902 1.23280 1.22231 0.81306 0.96321 0.96140 1.18380 0.94612 0.85711 1.48825 0.89021 1.25850 0.94486 1.01674 0.93166 1.69870 0.98444 1.37582 1.34321 0.86095 0.78159 0.80976 0.79807 1.18952 1.20327 1.18949 1.75572 1.20586 0.85736 1.32665 1.85316 1.24362 1.23597 1.68336 1.21035 0.93014 0.97711 0.94054 1.21112 1.00009 0.91821 1.09986 0.92554 0.92559 0.88437 0.84797 0.84212 0.91069 0.84272 0.85117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 15 2 O -0.32 -3.70 10.49 -19.06 -0.20 -3.90 15 3 C 0.13 1.68 6.69 -39.06 -0.26 1.41 15 4 C -0.15 -2.03 9.97 -39.49 -0.39 -2.42 15 5 C -0.05 -0.84 9.72 -39.22 -0.38 -1.22 15 6 C -0.03 -0.48 5.87 -104.96 -0.62 -1.10 15 7 C 0.15 3.65 7.98 -13.84 -0.11 3.54 15 8 N -0.51 -13.57 11.27 -11.42 -0.13 -13.70 15 9 C 0.29 8.64 7.67 -157.68 -1.21 7.43 15 10 C -0.43 -12.52 9.52 -37.59 -0.36 -12.88 15 11 H 0.09 2.49 7.85 -52.49 -0.41 2.08 15 12 C 0.07 1.88 5.49 -17.37 -0.10 1.78 15 13 N -0.77 -22.06 11.97 55.55 0.67 -21.39 15 14 Si 0.93 19.77 29.56 -169.99 -5.02 14.75 15 15 H -0.26 -5.53 7.11 56.52 0.40 -5.13 15 16 H -0.28 -5.75 7.11 56.52 0.40 -5.35 15 17 H -0.26 -5.52 7.11 56.52 0.40 -5.12 15 18 N -0.42 -12.47 10.46 30.30 0.32 -12.16 15 19 O 0.03 0.71 11.09 16.27 0.18 0.89 15 20 C -0.04 -0.62 9.69 -39.22 -0.38 -1.00 15 21 C -0.21 -2.75 9.02 -39.50 -0.36 -3.11 15 22 H 0.06 0.39 7.65 -51.93 -0.40 -0.01 15 23 H 0.06 0.38 7.65 -51.93 -0.40 -0.01 15 24 H 0.10 0.52 8.14 -51.93 -0.42 0.09 15 25 H 0.13 1.47 8.06 -52.49 -0.42 1.05 15 26 H 0.14 2.01 7.93 -52.48 -0.42 1.59 15 27 H 0.28 7.20 8.29 -40.82 -0.34 6.86 15 28 H 0.14 2.28 7.86 -52.49 -0.41 1.86 15 29 H 0.13 1.33 6.28 -52.48 -0.33 1.00 15 LS Contribution 267.30 15.07 4.03 4.03 Total: -1.00 -33.26 267.30 -5.68 -38.94 By element: Atomic # 1 Polarization: 1.26 SS G_CDS: -2.34 Total: -1.08 kcal Atomic # 6 Polarization: -3.20 SS G_CDS: -3.17 Total: -6.37 kcal Atomic # 7 Polarization: -48.10 SS G_CDS: 0.85 Total: -47.25 kcal Atomic # 8 Polarization: -2.99 SS G_CDS: -0.02 Total: -3.01 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.02 Total: 14.75 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -33.26 -5.68 -38.94 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071519214.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.672 kcal (2) G-P(sol) polarization free energy of solvation -33.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds